data_1V8M # _model_server_result.job_id JwkUwhefY_4CtYlYCzDrKQ _model_server_result.datetime_utc '2025-04-16 23:52:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v8m # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":303}' # _entry.id 1V8M # _exptl.entry_id 1V8M _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 157.25 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'GADOLINIUM ATOM' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1V8M _cell.length_a 49.61 _cell.length_b 49.61 _cell.length_c 119.87 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V8M _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_555 -x,-x+y,-z+2/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 79.913333 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ALA 66 A ALA 66 1_555 C GD GD . A GD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.252 ? metalc ? metalc2 A OE1 GLU 82 A GLU 82 1_555 D GD GD . A GD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.747 ? metalc ? metalc3 A OE2 GLU 82 A GLU 82 1_555 D GD GD . A GD 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc4 A OE2 GLU 86 A GLU 86 1_555 C GD GD . A GD 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc5 A OE2 GLU 122 A GLU 122 5_565 E GD GD . A GD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.056 ? metalc ? metalc6 A OE1 GLU 122 A GLU 122 1_555 F GD GD . A GD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? metalc ? metalc7 A OE2 GLU 122 A GLU 122 1_555 F GD GD . A GD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.131 ? metalc ? metalc8 A OE1 GLU 140 A GLU 140 1_555 E GD GD . A GD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.593 ? metalc ? metalc9 A OE2 GLU 140 A GLU 140 1_555 E GD GD . A GD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc10 A OE1 GLU 140 A GLU 140 5_665 F GD GD . A GD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.358 ? metalc ? metalc11 A OE2 GLU 140 A GLU 140 5_665 F GD GD . A GD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc12 A OE2 GLU 143 A GLU 143 1_555 E GD GD . A GD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.24 ? metalc ? metalc13 A OE1 GLU 143 A GLU 143 1_555 E GD GD . A GD 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.542 ? metalc ? metalc14 A OE2 GLU 143 A GLU 143 5_665 F GD GD . A GD 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.926 ? metalc ? metalc15 C GD GD . A GD 300 1_555 B O3A APR . A APR 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.745 ? metalc ? metalc16 C GD GD . A GD 300 1_555 G O HOH . A HOH 632 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.398 ? metalc ? metalc17 C GD GD . A GD 300 1_555 G O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? metalc ? metalc18 D GD GD . A GD 301 1_555 B O1A APR . A APR 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.704 ? metalc ? metalc19 D GD GD . A GD 301 1_555 G O HOH . A HOH 656 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.174 ? metalc ? metalc20 D GD GD . A GD 301 1_555 G O HOH . A HOH 657 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.979 ? metalc ? metalc21 E GD GD . A GD 302 1_555 G O HOH . A HOH 647 5_565 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc22 F GD GD . A GD 303 1_555 G O HOH . A HOH 647 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.996 ? # _chem_comp.formula Gd _chem_comp.formula_weight 157.25 _chem_comp.id GD _chem_comp.mon_nstd_flag . _chem_comp.name 'GADOLINIUM ATOM' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V8M _atom_sites.fract_transf_matrix[1][1] 0.020157 _atom_sites.fract_transf_matrix[1][2] 0.011638 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023276 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008342 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 APR A 1 619 619 APR APR . C 3 GD A 1 300 300 GD GD . D 3 GD A 1 301 301 GD GD . E 3 GD A 1 302 302 GD GD . F 3 GD A 1 303 303 GD GD . G 4 HOH A 1 620 1 HOH TIP . G 4 HOH A 2 621 2 HOH TIP . G 4 HOH A 3 622 3 HOH TIP . G 4 HOH A 4 623 4 HOH TIP . G 4 HOH A 5 624 5 HOH TIP . G 4 HOH A 6 625 6 HOH TIP . G 4 HOH A 7 626 7 HOH TIP . G 4 HOH A 8 627 8 HOH TIP . G 4 HOH A 9 628 9 HOH TIP . G 4 HOH A 10 629 10 HOH TIP . G 4 HOH A 11 630 11 HOH TIP . G 4 HOH A 12 631 12 HOH TIP . G 4 HOH A 13 632 13 HOH TIP . G 4 HOH A 14 633 14 HOH TIP . G 4 HOH A 15 634 15 HOH TIP . G 4 HOH A 16 635 16 HOH TIP . G 4 HOH A 17 636 17 HOH TIP . G 4 HOH A 18 637 18 HOH TIP . G 4 HOH A 19 638 20 HOH TIP . G 4 HOH A 20 639 21 HOH TIP . G 4 HOH A 21 640 22 HOH TIP . G 4 HOH A 22 641 23 HOH TIP . G 4 HOH A 23 642 24 HOH TIP . G 4 HOH A 24 643 25 HOH TIP . G 4 HOH A 25 644 26 HOH TIP . G 4 HOH A 26 645 27 HOH TIP . G 4 HOH A 27 646 28 HOH TIP . G 4 HOH A 28 647 29 HOH TIP . G 4 HOH A 29 648 30 HOH TIP . G 4 HOH A 30 649 31 HOH TIP . G 4 HOH A 31 650 32 HOH TIP . G 4 HOH A 32 651 33 HOH TIP . G 4 HOH A 33 652 34 HOH TIP . G 4 HOH A 34 653 35 HOH TIP . G 4 HOH A 35 654 36 HOH TIP . G 4 HOH A 36 655 37 HOH TIP . G 4 HOH A 37 656 38 HOH TIP . G 4 HOH A 38 657 39 HOH TIP . G 4 HOH A 39 658 40 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol GD _atom_site.label_atom_id GD _atom_site.label_comp_id GD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 3 _atom_site.Cartn_x -9.626 _atom_site.Cartn_y 19.138 _atom_site.Cartn_z 7.513 _atom_site.occupancy 0.59 _atom_site.B_iso_or_equiv 15.65 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id GD _atom_site.auth_comp_id GD _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 1 #