data_1V8S
#
_model_server_result.job_id            '_vOe8QbyOd8r4g-V6VvKaw' 
_model_server_result.datetime_utc      '2025-09-05 01:25:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v8s 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":619}' 
#
_entry.id    1V8S 
#
_exptl.entry_id    1V8S 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              347.221 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ADENOSINE MONOPHOSPHATE' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1V8S 
_cell.length_a            49.74 
_cell.length_b            49.74 
_cell.length_c            118.12 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V8S 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        154 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 32 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 118.12 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A N LEU 68 A LEU 68 1_555 B MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.024 ? 
metalc ? metalc2 B MG MG . A MG 301 1_555 C O5' AMP . A AMP 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? 
metalc ? metalc3 B MG MG . A MG 301 1_555 C O1P AMP . A AMP 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? 
metalc ? metalc4 B MG MG . A MG 301 1_555 C O2P AMP . A AMP 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.975 ? 
#
_chem_comp.formula           'C10 H14 N5 O7 P' 
_chem_comp.formula_weight    347.221 
_chem_comp.id                AMP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ADENOSINE MONOPHOSPHATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P AMP doub 13 n n 
P O2P AMP sing 14 n n 
P O3P AMP sing 15 n n 
P O5' AMP sing 16 n n 
O2P HOP2 AMP sing 17 n n 
O3P HOP3 AMP sing 18 n n 
O5' C5' AMP sing 19 n n 
C5' C4' AMP sing 20 n n 
C5' "H5'1" AMP sing 21 n n 
C5' "H5'2" AMP sing 22 n n 
C4' O4' AMP sing 23 n n 
C4' C3' AMP sing 24 n n 
C4' H4' AMP sing 25 n n 
O4' C1' AMP sing 26 n n 
C3' O3' AMP sing 27 n n 
C3' C2' AMP sing 28 n n 
C3' H3' AMP sing 29 n n 
O3' HO3' AMP sing 30 n n 
C2' O2' AMP sing 31 n n 
C2' C1' AMP sing 32 n n 
C2' H2' AMP sing 33 n n 
O2' HO2' AMP sing 34 n n 
C1' N9 AMP sing 35 n n 
C1' H1' AMP sing 36 n n 
N9 C8 AMP sing 37 n y 
N9 C4 AMP sing 38 n y 
C8 N7 AMP doub 39 n y 
C8 H8 AMP sing 40 n n 
N7 C5 AMP sing 41 n y 
C5 C6 AMP sing 42 n y 
C5 C4 AMP doub 43 n y 
C6 N6 AMP sing 44 n n 
C6 N1 AMP doub 45 n y 
N6 HN61 AMP sing 46 n n 
N6 HN62 AMP sing 47 n n 
N1 C2 AMP sing 48 n y 
C2 N3 AMP doub 49 n y 
C2 H2 AMP sing 50 n n 
N3 C4 AMP sing 51 n y 
#
_atom_sites.entry_id                     1V8S 
_atom_sites.fract_transf_matrix[1][1]    0.020105 
_atom_sites.fract_transf_matrix[1][2]    0.011607 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.023215 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008466 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 301 301 MG MG2 . 
C 3 AMP A 1 619 619 AMP AMP . 
D 4 HOH A 1 620 1 HOH TIP . 
D 4 HOH A 2 621 2 HOH TIP . 
D 4 HOH A 3 622 3 HOH TIP . 
D 4 HOH A 4 623 4 HOH TIP . 
D 4 HOH A 5 624 5 HOH TIP . 
D 4 HOH A 6 625 6 HOH TIP . 
D 4 HOH A 7 626 8 HOH TIP . 
D 4 HOH A 8 627 9 HOH TIP . 
D 4 HOH A 9 628 10 HOH TIP . 
D 4 HOH A 10 629 11 HOH TIP . 
D 4 HOH A 11 630 12 HOH TIP . 
D 4 HOH A 12 631 13 HOH TIP . 
D 4 HOH A 13 632 14 HOH TIP . 
D 4 HOH A 14 633 15 HOH TIP . 
D 4 HOH A 15 634 16 HOH TIP . 
D 4 HOH A 16 635 17 HOH TIP . 
D 4 HOH A 17 636 18 HOH TIP . 
D 4 HOH A 18 637 19 HOH TIP . 
D 4 HOH A 19 638 20 HOH TIP . 
D 4 HOH A 20 639 21 HOH TIP . 
D 4 HOH A 21 640 22 HOH TIP . 
D 4 HOH A 22 641 23 HOH TIP . 
D 4 HOH A 23 642 24 HOH TIP . 
D 4 HOH A 24 643 25 HOH TIP . 
D 4 HOH A 25 644 26 HOH TIP . 
D 4 HOH A 26 645 27 HOH TIP . 
D 4 HOH A 27 646 28 HOH TIP . 
D 4 HOH A 28 647 29 HOH TIP . 
D 4 HOH A 29 648 30 HOH TIP . 
D 4 HOH A 30 649 31 HOH TIP . 
D 4 HOH A 31 650 32 HOH TIP . 
D 4 HOH A 32 651 33 HOH TIP . 
D 4 HOH A 33 652 34 HOH TIP . 
D 4 HOH A 34 653 35 HOH TIP . 
D 4 HOH A 35 654 36 HOH TIP . 
D 4 HOH A 36 655 37 HOH TIP . 
D 4 HOH A 37 656 38 HOH TIP . 
D 4 HOH A 38 657 40 HOH TIP . 
D 4 HOH A 39 658 41 HOH TIP . 
D 4 HOH A 40 659 42 HOH TIP . 
D 4 HOH A 41 660 43 HOH TIP . 
D 4 HOH A 42 661 44 HOH TIP . 
D 4 HOH A 43 662 45 HOH TIP . 
D 4 HOH A 44 663 47 HOH TIP . 
D 4 HOH A 45 664 50 HOH TIP . 
D 4 HOH A 46 665 51 HOH TIP . 
D 4 HOH A 47 666 52 HOH TIP . 
D 4 HOH A 48 667 53 HOH TIP . 
D 4 HOH A 49 668 54 HOH TIP . 
D 4 HOH A 50 669 55 HOH TIP . 
D 4 HOH A 51 670 56 HOH TIP . 
D 4 HOH A 52 671 57 HOH TIP . 
D 4 HOH A 53 672 61 HOH TIP . 
D 4 HOH A 54 673 62 HOH TIP . 
D 4 HOH A 55 674 64 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P AMP . . . C 3 7.374 11.321 45.641 1 70.33 ? P AMP 619 A 1 
HETATM 2 O O1P AMP . . . C 3 8.228 11.167 46.914 1 69.76 ? O1P AMP 619 A 1 
HETATM 3 O O2P AMP . . . C 3 7.772 12.55 44.923 1 70.19 ? O2P AMP 619 A 1 
HETATM 4 O O3P AMP . . . C 3 5.882 11.363 46.015 1 69.83 ? O3P AMP 619 A 1 
HETATM 5 O O5' AMP . . . C 3 7.592 10.029 44.695 1 68.16 ? O5' AMP 619 A 1 
HETATM 6 C C5' AMP . . . C 3 7.286 8.729 45.165 1 64.62 ? C5' AMP 619 A 1 
HETATM 7 C C4' AMP . . . C 3 6.513 7.884 44.132 1 61.49 ? C4' AMP 619 A 1 
HETATM 8 O O4' AMP . . . C 3 5.697 6.962 44.856 1 59.39 ? O4' AMP 619 A 1 
HETATM 9 C C3' AMP . . . C 3 5.591 8.726 43.249 1 60.26 ? C3' AMP 619 A 1 
HETATM 10 O O3' AMP . . . C 3 5.988 8.689 41.906 1 60.96 ? O3' AMP 619 A 1 
HETATM 11 C C2' AMP . . . C 3 4.184 8.182 43.475 1 58.91 ? C2' AMP 619 A 1 
HETATM 12 O O2' AMP . . . C 3 3.594 7.639 42.299 1 58.69 ? O2' AMP 619 A 1 
HETATM 13 C C1' AMP . . . C 3 4.314 7.135 44.615 1 57.5 ? C1' AMP 619 A 1 
HETATM 14 N N9 AMP . . . C 3 3.704 7.58 45.928 1 54.74 ? N9 AMP 619 A 1 
HETATM 15 C C8 AMP . . . C 3 3.72 8.862 46.428 1 53.95 ? C8 AMP 619 A 1 
HETATM 16 N N7 AMP . . . C 3 3.079 8.918 47.621 1 53.24 ? N7 AMP 619 A 1 
HETATM 17 C C5 AMP . . . C 3 2.642 7.682 47.908 1 51.95 ? C5 AMP 619 A 1 
HETATM 18 C C6 AMP . . . C 3 1.924 7.205 49.017 1 49.73 ? C6 AMP 619 A 1 
HETATM 19 N N6 AMP . . . C 3 1.563 8.027 50.005 1 47.05 ? N6 AMP 619 A 1 
HETATM 20 N N1 AMP . . . C 3 1.606 5.836 49.038 1 49.04 ? N1 AMP 619 A 1 
HETATM 21 C C2 AMP . . . C 3 1.983 4.969 48.006 1 49.58 ? C2 AMP 619 A 1 
HETATM 22 N N3 AMP . . . C 3 2.699 5.45 46.898 1 50.83 ? N3 AMP 619 A 1 
HETATM 23 C C4 AMP . . . C 3 3.022 6.803 46.861 1 52.7 ? C4 AMP 619 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           23 
#