data_1V8Z # _model_server_result.job_id BE2wPuGdiS1MOLRXXzeESQ _model_server_result.datetime_utc '2024-11-05 01:14:40' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v8z # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":389}' # _entry.id 1V8Z # _exptl.entry_id 1V8Z _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V8Z _cell.length_a 84.835 _cell.length_b 110.53 _cell.length_c 159.999 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V8Z _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 PISA,PQS dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression C,D,I,J,K,N,O 1 1 C,D,I,J,K,N,O 2 1 A,B,E,F,G,H,L,M 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 82 A LYS 82 1_555 F C4A PLP . A PLP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.459 ? covale ? covale2 B NZ LYS 82 B LYS 82 1_555 H C4A PLP . B PLP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? covale ? covale3 C NZ LYS 82 C LYS 82 1_555 J C4A PLP . C PLP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.46 ? covale ? covale4 D NZ LYS 82 D LYS 82 1_555 K C4A PLP . D PLP 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.458 ? metalc ? metalc1 A O GLY 227 A GLY 227 1_555 E NA NA . A NA 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc2 A O GLY 303 A GLY 303 1_555 E NA NA . A NA 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.434 ? metalc ? metalc3 E NA NA . A NA 389 1_555 L O HOH . A HOH 410 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.288 ? metalc ? metalc4 E NA NA . A NA 389 1_555 L O HOH . A HOH 454 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.091 ? metalc ? metalc5 E NA NA . A NA 389 1_555 L O HOH . A HOH 455 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc6 B O GLY 227 B GLY 227 1_555 G NA NA . B NA 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? metalc ? metalc7 B O GLY 303 B GLY 303 1_555 G NA NA . B NA 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.492 ? metalc ? metalc8 G NA NA . B NA 389 1_555 M O HOH . B HOH 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.392 ? metalc ? metalc9 G NA NA . B NA 389 1_555 M O HOH . B HOH 474 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.436 ? metalc ? metalc10 G NA NA . B NA 389 1_555 M O HOH . B HOH 483 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.307 ? metalc ? metalc11 C O GLY 227 C GLY 227 1_555 I NA NA . C NA 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc12 C O GLY 303 C GLY 303 1_555 I NA NA . C NA 389 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc13 I NA NA . C NA 389 1_555 N O HOH . C HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.536 ? metalc ? metalc14 I NA NA . C NA 389 1_555 N O HOH . C HOH 419 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? metalc ? metalc15 I NA NA . C NA 389 1_555 N O HOH . C HOH 461 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V8Z _atom_sites.fract_transf_matrix[1][1] 0.011788 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009047 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00625 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 NA A 1 389 3 NA NA . F 3 PLP A 1 400 400 PLP PLP . G 2 NA B 1 389 2 NA NA . H 3 PLP B 1 400 400 PLP PLP . I 2 NA C 1 389 1 NA NA . J 3 PLP C 1 400 400 PLP PLP . K 3 PLP D 1 400 400 PLP PLP . L 4 HOH A 1 401 14 HOH TIP . L 4 HOH A 2 402 17 HOH TIP . L 4 HOH A 3 403 26 HOH TIP . L 4 HOH A 4 404 27 HOH TIP . L 4 HOH A 5 405 28 HOH TIP . L 4 HOH A 6 406 33 HOH TIP . L 4 HOH A 7 407 39 HOH TIP . L 4 HOH A 8 408 42 HOH TIP . L 4 HOH A 9 409 49 HOH TIP . L 4 HOH A 10 410 55 HOH TIP . L 4 HOH A 11 411 57 HOH TIP . L 4 HOH A 12 412 62 HOH TIP . L 4 HOH A 13 413 63 HOH TIP . L 4 HOH A 14 414 66 HOH TIP . L 4 HOH A 15 415 68 HOH TIP . L 4 HOH A 16 416 73 HOH TIP . L 4 HOH A 17 417 79 HOH TIP . L 4 HOH A 18 418 88 HOH TIP . L 4 HOH A 19 419 94 HOH TIP . L 4 HOH A 20 420 98 HOH TIP . L 4 HOH A 21 421 100 HOH TIP . L 4 HOH A 22 422 101 HOH TIP . L 4 HOH A 23 423 110 HOH TIP . L 4 HOH A 24 424 111 HOH TIP . L 4 HOH A 25 425 118 HOH TIP . L 4 HOH A 26 426 121 HOH TIP . L 4 HOH A 27 427 123 HOH TIP . L 4 HOH A 28 428 127 HOH TIP . L 4 HOH A 29 429 132 HOH TIP . L 4 HOH A 30 430 136 HOH TIP . L 4 HOH A 31 431 143 HOH TIP . L 4 HOH A 32 432 145 HOH TIP . L 4 HOH A 33 433 153 HOH TIP . L 4 HOH A 34 434 174 HOH TIP . L 4 HOH A 35 435 177 HOH TIP . L 4 HOH A 36 436 185 HOH TIP . L 4 HOH A 37 437 189 HOH TIP . L 4 HOH A 38 438 197 HOH TIP . L 4 HOH A 39 439 200 HOH TIP . L 4 HOH A 40 440 205 HOH TIP . L 4 HOH A 41 441 207 HOH TIP . L 4 HOH A 42 442 208 HOH TIP . L 4 HOH A 43 443 223 HOH TIP . L 4 HOH A 44 444 227 HOH TIP . L 4 HOH A 45 445 231 HOH TIP . L 4 HOH A 46 446 232 HOH TIP . L 4 HOH A 47 447 240 HOH TIP . L 4 HOH A 48 448 241 HOH TIP . L 4 HOH A 49 449 245 HOH TIP . L 4 HOH A 50 450 247 HOH TIP . L 4 HOH A 51 451 254 HOH TIP . L 4 HOH A 52 452 256 HOH TIP . L 4 HOH A 53 453 263 HOH TIP . L 4 HOH A 54 454 270 HOH TIP . L 4 HOH A 55 455 271 HOH TIP . M 4 HOH B 1 401 5 HOH TIP . M 4 HOH B 2 402 6 HOH TIP . M 4 HOH B 3 403 8 HOH TIP . M 4 HOH B 4 404 9 HOH TIP . M 4 HOH B 5 405 11 HOH TIP . M 4 HOH B 6 406 12 HOH TIP . M 4 HOH B 7 407 13 HOH TIP . M 4 HOH B 8 408 15 HOH TIP . M 4 HOH B 9 409 16 HOH TIP . M 4 HOH B 10 410 20 HOH TIP . M 4 HOH B 11 411 21 HOH TIP . M 4 HOH B 12 412 23 HOH TIP . M 4 HOH B 13 413 34 HOH TIP . M 4 HOH B 14 414 35 HOH TIP . M 4 HOH B 15 415 41 HOH TIP . M 4 HOH B 16 416 44 HOH TIP . M 4 HOH B 17 417 45 HOH TIP . M 4 HOH B 18 418 46 HOH TIP . M 4 HOH B 19 419 50 HOH TIP . M 4 HOH B 20 420 51 HOH TIP . M 4 HOH B 21 421 52 HOH TIP . M 4 HOH B 22 422 54 HOH TIP . M 4 HOH B 23 423 56 HOH TIP . M 4 HOH B 24 424 59 HOH TIP . M 4 HOH B 25 425 60 HOH TIP . M 4 HOH B 26 426 61 HOH TIP . M 4 HOH B 27 427 65 HOH TIP . M 4 HOH B 28 428 69 HOH TIP . M 4 HOH B 29 429 72 HOH TIP . M 4 HOH B 30 430 74 HOH TIP . M 4 HOH B 31 431 76 HOH TIP . M 4 HOH B 32 432 77 HOH TIP . M 4 HOH B 33 433 80 HOH TIP . M 4 HOH B 34 434 81 HOH TIP . M 4 HOH B 35 435 82 HOH TIP . M 4 HOH B 36 436 84 HOH TIP . M 4 HOH B 37 437 87 HOH TIP . M 4 HOH B 38 438 96 HOH TIP . M 4 HOH B 39 439 97 HOH TIP . M 4 HOH B 40 440 106 HOH TIP . M 4 HOH B 41 441 108 HOH TIP . M 4 HOH B 42 442 114 HOH TIP . M 4 HOH B 43 443 117 HOH TIP . M 4 HOH B 44 444 122 HOH TIP . M 4 HOH B 45 445 124 HOH TIP . M 4 HOH B 46 446 125 HOH TIP . M 4 HOH B 47 447 130 HOH TIP . M 4 HOH B 48 448 131 HOH TIP . M 4 HOH B 49 449 135 HOH TIP . M 4 HOH B 50 450 137 HOH TIP . M 4 HOH B 51 451 138 HOH TIP . M 4 HOH B 52 452 140 HOH TIP . M 4 HOH B 53 453 147 HOH TIP . M 4 HOH B 54 454 148 HOH TIP . M 4 HOH B 55 455 154 HOH TIP . M 4 HOH B 56 456 158 HOH TIP . M 4 HOH B 57 457 159 HOH TIP . M 4 HOH B 58 458 160 HOH TIP . M 4 HOH B 59 459 163 HOH TIP . M 4 HOH B 60 460 165 HOH TIP . M 4 HOH B 61 461 168 HOH TIP . M 4 HOH B 62 462 172 HOH TIP . M 4 HOH B 63 463 179 HOH TIP . M 4 HOH B 64 464 180 HOH TIP . M 4 HOH B 65 465 182 HOH TIP . M 4 HOH B 66 466 183 HOH TIP . M 4 HOH B 67 467 184 HOH TIP . M 4 HOH B 68 468 186 HOH TIP . M 4 HOH B 69 469 188 HOH TIP . M 4 HOH B 70 470 193 HOH TIP . M 4 HOH B 71 471 195 HOH TIP . M 4 HOH B 72 472 199 HOH TIP . M 4 HOH B 73 473 201 HOH TIP . M 4 HOH B 74 474 203 HOH TIP . M 4 HOH B 75 475 204 HOH TIP . M 4 HOH B 76 476 206 HOH TIP . M 4 HOH B 77 477 218 HOH TIP . M 4 HOH B 78 478 225 HOH TIP . M 4 HOH B 79 479 226 HOH TIP . M 4 HOH B 80 480 233 HOH TIP . M 4 HOH B 81 481 234 HOH TIP . M 4 HOH B 82 482 237 HOH TIP . M 4 HOH B 83 483 242 HOH TIP . M 4 HOH B 84 484 244 HOH TIP . M 4 HOH B 85 485 246 HOH TIP . M 4 HOH B 86 486 248 HOH TIP . M 4 HOH B 87 487 259 HOH TIP . M 4 HOH B 88 488 260 HOH TIP . M 4 HOH B 89 489 262 HOH TIP . N 4 HOH C 1 401 7 HOH TIP . N 4 HOH C 2 402 10 HOH TIP . N 4 HOH C 3 403 19 HOH TIP . N 4 HOH C 4 404 22 HOH TIP . N 4 HOH C 5 405 24 HOH TIP . N 4 HOH C 6 406 25 HOH TIP . N 4 HOH C 7 407 29 HOH TIP . N 4 HOH C 8 408 30 HOH TIP . N 4 HOH C 9 409 31 HOH TIP . N 4 HOH C 10 410 32 HOH TIP . N 4 HOH C 11 411 37 HOH TIP . N 4 HOH C 12 412 38 HOH TIP . N 4 HOH C 13 413 43 HOH TIP . N 4 HOH C 14 414 47 HOH TIP . N 4 HOH C 15 415 48 HOH TIP . N 4 HOH C 16 416 53 HOH TIP . N 4 HOH C 17 417 58 HOH TIP . N 4 HOH C 18 418 67 HOH TIP . N 4 HOH C 19 419 78 HOH TIP . N 4 HOH C 20 420 85 HOH TIP . N 4 HOH C 21 421 89 HOH TIP . N 4 HOH C 22 422 104 HOH TIP . N 4 HOH C 23 423 107 HOH TIP . N 4 HOH C 24 424 109 HOH TIP . N 4 HOH C 25 425 113 HOH TIP . N 4 HOH C 26 426 119 HOH TIP . N 4 HOH C 27 427 120 HOH TIP . N 4 HOH C 28 428 128 HOH TIP . N 4 HOH C 29 429 129 HOH TIP . N 4 HOH C 30 430 139 HOH TIP . N 4 HOH C 31 431 141 HOH TIP . N 4 HOH C 32 432 142 HOH TIP . N 4 HOH C 33 433 144 HOH TIP . N 4 HOH C 34 434 149 HOH TIP . N 4 HOH C 35 435 151 HOH TIP . N 4 HOH C 36 436 152 HOH TIP . N 4 HOH C 37 437 155 HOH TIP . N 4 HOH C 38 438 157 HOH TIP . N 4 HOH C 39 439 161 HOH TIP . N 4 HOH C 40 440 162 HOH TIP . N 4 HOH C 41 441 164 HOH TIP . N 4 HOH C 42 442 167 HOH TIP . N 4 HOH C 43 443 170 HOH TIP . N 4 HOH C 44 444 175 HOH TIP . N 4 HOH C 45 445 181 HOH TIP . N 4 HOH C 46 446 187 HOH TIP . N 4 HOH C 47 447 192 HOH TIP . N 4 HOH C 48 448 198 HOH TIP . N 4 HOH C 49 449 212 HOH TIP . N 4 HOH C 50 450 215 HOH TIP . N 4 HOH C 51 451 219 HOH TIP . N 4 HOH C 52 452 220 HOH TIP . N 4 HOH C 53 453 224 HOH TIP . N 4 HOH C 54 454 228 HOH TIP . N 4 HOH C 55 455 230 HOH TIP . N 4 HOH C 56 456 243 HOH TIP . N 4 HOH C 57 457 251 HOH TIP . N 4 HOH C 58 458 252 HOH TIP . N 4 HOH C 59 459 255 HOH TIP . N 4 HOH C 60 460 257 HOH TIP . N 4 HOH C 61 461 266 HOH TIP . O 4 HOH D 1 401 4 HOH TIP . O 4 HOH D 2 402 18 HOH TIP . O 4 HOH D 3 403 40 HOH TIP . O 4 HOH D 4 404 64 HOH TIP . O 4 HOH D 5 405 70 HOH TIP . O 4 HOH D 6 406 71 HOH TIP . O 4 HOH D 7 407 75 HOH TIP . O 4 HOH D 8 408 83 HOH TIP . O 4 HOH D 9 409 86 HOH TIP . O 4 HOH D 10 410 91 HOH TIP . O 4 HOH D 11 411 92 HOH TIP . O 4 HOH D 12 412 93 HOH TIP . O 4 HOH D 13 413 95 HOH TIP . O 4 HOH D 14 414 99 HOH TIP . O 4 HOH D 15 415 103 HOH TIP . O 4 HOH D 16 416 112 HOH TIP . O 4 HOH D 17 417 115 HOH TIP . O 4 HOH D 18 418 116 HOH TIP . O 4 HOH D 19 419 126 HOH TIP . O 4 HOH D 20 420 133 HOH TIP . O 4 HOH D 21 421 134 HOH TIP . O 4 HOH D 22 422 146 HOH TIP . O 4 HOH D 23 423 150 HOH TIP . O 4 HOH D 24 424 156 HOH TIP . O 4 HOH D 25 425 166 HOH TIP . O 4 HOH D 26 426 171 HOH TIP . O 4 HOH D 27 427 173 HOH TIP . O 4 HOH D 28 428 176 HOH TIP . O 4 HOH D 29 429 178 HOH TIP . O 4 HOH D 30 430 194 HOH TIP . O 4 HOH D 31 431 202 HOH TIP . O 4 HOH D 32 432 209 HOH TIP . O 4 HOH D 33 433 210 HOH TIP . O 4 HOH D 34 434 211 HOH TIP . O 4 HOH D 35 435 213 HOH TIP . O 4 HOH D 36 436 217 HOH TIP . O 4 HOH D 37 437 222 HOH TIP . O 4 HOH D 38 438 235 HOH TIP . O 4 HOH D 39 439 236 HOH TIP . O 4 HOH D 40 440 249 HOH TIP . O 4 HOH D 41 441 250 HOH TIP . O 4 HOH D 42 442 258 HOH TIP . O 4 HOH D 43 443 264 HOH TIP . O 4 HOH D 44 444 267 HOH TIP . O 4 HOH D 45 445 268 HOH TIP . O 4 HOH D 46 446 269 HOH TIP . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 2 _atom_site.Cartn_x -47.758 _atom_site.Cartn_y 75.45 _atom_site.Cartn_z 54.131 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.09 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 389 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 14 _model_server_stats.query_time_ms 274 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #