data_1V98 # _model_server_result.job_id LYfgQB4mg46JwAv4D5SkEw _model_server_result.datetime_utc '2024-11-05 00:28:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v98 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":501}' # _entry.id 1V98 # _exptl.entry_id 1V98 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 91.41 _cell.angle_gamma 90 _cell.entry_id 1V98 _cell.length_a 40.91 _cell.length_b 95.441 _cell.length_c 56.683 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V98 _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,H 1 1,2 B,F,G,I 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1 0 0 0 1 0 0 0 -1 39.515221 0 56.665837 3 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 62 1_555 A SG CYS 65 A CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? disulf ? disulf2 B SG CYS 62 B CYS 62 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.614 ? metalc ? metalc1 A OD2 ASP 78 A ASP 78 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.91 ? metalc ? metalc2 A OD2 ASP 78 A ASP 78 3_445 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.3 ? metalc ? metalc3 A OD1 ASP 78 A ASP 78 3_445 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.999 ? metalc ? metalc4 A NE2 HIS 79 A HIS 79 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.31 ? metalc ? metalc5 A OE1 GLU 130 A GLU 130 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.464 ? metalc ? metalc6 A OE2 GLU 130 A GLU 130 1_555 C MG MG . A MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.271 ? metalc ? metalc7 C MG MG . A MG 501 1_555 B OD1 ASP 78 B ASP 78 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.767 ? metalc ? metalc8 C MG MG . A MG 501 1_555 B OD2 ASP 78 B ASP 78 3_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc9 B OD2 ASP 78 B ASP 78 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc10 B NE2 HIS 79 B HIS 79 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc11 B OE1 GLU 130 B GLU 130 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.207 ? metalc ? metalc12 B OE2 GLU 130 B GLU 130 1_555 F MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.78 ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1V98 _atom_sites.fract_transf_matrix[1][1] 0.024444 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000602 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010478 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017647 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG A 1 501 501 MG MG . D 3 SO4 A 1 601 601 SO4 SO4 . E 3 SO4 A 1 603 603 SO4 SO4 . F 2 MG B 1 502 502 MG MG . G 3 SO4 B 1 602 602 SO4 SO4 . H 4 HOH A 1 604 1 HOH HOH . H 4 HOH A 2 605 2 HOH HOH . H 4 HOH A 3 606 3 HOH HOH . H 4 HOH A 4 607 5 HOH HOH . H 4 HOH A 5 608 6 HOH HOH . H 4 HOH A 6 609 8 HOH HOH . H 4 HOH A 7 610 11 HOH HOH . H 4 HOH A 8 611 13 HOH HOH . H 4 HOH A 9 612 18 HOH HOH . H 4 HOH A 10 613 19 HOH HOH . H 4 HOH A 11 614 21 HOH HOH . H 4 HOH A 12 615 23 HOH HOH . H 4 HOH A 13 616 27 HOH HOH . H 4 HOH A 14 617 30 HOH HOH . H 4 HOH A 15 618 34 HOH HOH . H 4 HOH A 16 619 35 HOH HOH . H 4 HOH A 17 620 37 HOH HOH . H 4 HOH A 18 621 40 HOH HOH . H 4 HOH A 19 622 42 HOH HOH . H 4 HOH A 20 623 43 HOH HOH . H 4 HOH A 21 624 47 HOH HOH . H 4 HOH A 22 625 49 HOH HOH . H 4 HOH A 23 626 50 HOH HOH . H 4 HOH A 24 627 51 HOH HOH . H 4 HOH A 25 628 52 HOH HOH . H 4 HOH A 26 629 53 HOH HOH . H 4 HOH A 27 630 55 HOH HOH . H 4 HOH A 28 631 56 HOH HOH . H 4 HOH A 29 632 57 HOH HOH . H 4 HOH A 30 633 58 HOH HOH . H 4 HOH A 31 634 60 HOH HOH . H 4 HOH A 32 635 62 HOH HOH . H 4 HOH A 33 636 63 HOH HOH . H 4 HOH A 34 637 67 HOH HOH . H 4 HOH A 35 638 68 HOH HOH . H 4 HOH A 36 639 71 HOH HOH . H 4 HOH A 37 640 72 HOH HOH . H 4 HOH A 38 641 73 HOH HOH . H 4 HOH A 39 642 74 HOH HOH . H 4 HOH A 40 643 75 HOH HOH . H 4 HOH A 41 644 76 HOH HOH . H 4 HOH A 42 645 77 HOH HOH . H 4 HOH A 43 646 81 HOH HOH . H 4 HOH A 44 647 82 HOH HOH . H 4 HOH A 45 648 87 HOH HOH . H 4 HOH A 46 649 89 HOH HOH . H 4 HOH A 47 650 91 HOH HOH . H 4 HOH A 48 651 92 HOH HOH . H 4 HOH A 49 652 96 HOH HOH . H 4 HOH A 50 653 97 HOH HOH . H 4 HOH A 51 654 98 HOH HOH . H 4 HOH A 52 655 100 HOH HOH . H 4 HOH A 53 656 105 HOH HOH . H 4 HOH A 54 657 106 HOH HOH . H 4 HOH A 55 658 107 HOH HOH . H 4 HOH A 56 659 109 HOH HOH . H 4 HOH A 57 660 111 HOH HOH . H 4 HOH A 58 661 113 HOH HOH . H 4 HOH A 59 662 118 HOH HOH . H 4 HOH A 60 663 119 HOH HOH . H 4 HOH A 61 664 120 HOH HOH . H 4 HOH A 62 665 121 HOH HOH . H 4 HOH A 63 666 123 HOH HOH . H 4 HOH A 64 667 125 HOH HOH . H 4 HOH A 65 668 126 HOH HOH . H 4 HOH A 66 669 127 HOH HOH . H 4 HOH A 67 670 128 HOH HOH . H 4 HOH A 68 671 129 HOH HOH . H 4 HOH A 69 672 131 HOH HOH . H 4 HOH A 70 673 132 HOH HOH . H 4 HOH A 71 674 133 HOH HOH . H 4 HOH A 72 675 136 HOH HOH . H 4 HOH A 73 676 137 HOH HOH . H 4 HOH A 74 677 140 HOH HOH . H 4 HOH A 75 678 141 HOH HOH . H 4 HOH A 76 679 143 HOH HOH . H 4 HOH A 77 680 144 HOH HOH . H 4 HOH A 78 681 145 HOH HOH . H 4 HOH A 79 682 146 HOH HOH . H 4 HOH A 80 683 147 HOH HOH . H 4 HOH A 81 684 148 HOH HOH . H 4 HOH A 82 685 149 HOH HOH . H 4 HOH A 83 686 151 HOH HOH . H 4 HOH A 84 687 152 HOH HOH . H 4 HOH A 85 688 162 HOH HOH . H 4 HOH A 86 689 168 HOH HOH . H 4 HOH A 87 690 169 HOH HOH . H 4 HOH A 88 691 170 HOH HOH . H 4 HOH A 89 692 174 HOH HOH . H 4 HOH A 90 693 176 HOH HOH . H 4 HOH A 91 694 178 HOH HOH . H 4 HOH A 92 695 179 HOH HOH . H 4 HOH A 93 696 181 HOH HOH . H 4 HOH A 94 697 182 HOH HOH . H 4 HOH A 95 698 183 HOH HOH . H 4 HOH A 96 699 187 HOH HOH . H 4 HOH A 97 700 189 HOH HOH . H 4 HOH A 98 701 193 HOH HOH . H 4 HOH A 99 702 194 HOH HOH . H 4 HOH A 100 703 197 HOH HOH . H 4 HOH A 101 704 198 HOH HOH . H 4 HOH A 102 705 199 HOH HOH . H 4 HOH A 103 706 200 HOH HOH . H 4 HOH A 104 707 201 HOH HOH . I 4 HOH B 1 603 4 HOH HOH . I 4 HOH B 2 604 7 HOH HOH . I 4 HOH B 3 605 9 HOH HOH . I 4 HOH B 4 606 10 HOH HOH . I 4 HOH B 5 607 12 HOH HOH . I 4 HOH B 6 608 14 HOH HOH . I 4 HOH B 7 609 15 HOH HOH . I 4 HOH B 8 610 16 HOH HOH . I 4 HOH B 9 611 17 HOH HOH . I 4 HOH B 10 612 20 HOH HOH . I 4 HOH B 11 613 22 HOH HOH . I 4 HOH B 12 614 24 HOH HOH . I 4 HOH B 13 615 25 HOH HOH . I 4 HOH B 14 616 26 HOH HOH . I 4 HOH B 15 617 28 HOH HOH . I 4 HOH B 16 618 29 HOH HOH . I 4 HOH B 17 619 31 HOH HOH . I 4 HOH B 18 620 32 HOH HOH . I 4 HOH B 19 621 33 HOH HOH . I 4 HOH B 20 622 36 HOH HOH . I 4 HOH B 21 623 38 HOH HOH . I 4 HOH B 22 624 39 HOH HOH . I 4 HOH B 23 625 41 HOH HOH . I 4 HOH B 24 626 44 HOH HOH . I 4 HOH B 25 627 45 HOH HOH . I 4 HOH B 26 628 46 HOH HOH . I 4 HOH B 27 629 54 HOH HOH . I 4 HOH B 28 630 59 HOH HOH . I 4 HOH B 29 631 61 HOH HOH . I 4 HOH B 30 632 64 HOH HOH . I 4 HOH B 31 633 65 HOH HOH . I 4 HOH B 32 634 66 HOH HOH . I 4 HOH B 33 635 69 HOH HOH . I 4 HOH B 34 636 70 HOH HOH . I 4 HOH B 35 637 78 HOH HOH . I 4 HOH B 36 638 79 HOH HOH . I 4 HOH B 37 639 80 HOH HOH . I 4 HOH B 38 640 83 HOH HOH . I 4 HOH B 39 641 84 HOH HOH . I 4 HOH B 40 642 85 HOH HOH . I 4 HOH B 41 643 86 HOH HOH . I 4 HOH B 42 644 88 HOH HOH . I 4 HOH B 43 645 90 HOH HOH . I 4 HOH B 44 646 93 HOH HOH . I 4 HOH B 45 647 94 HOH HOH . I 4 HOH B 46 648 95 HOH HOH . I 4 HOH B 47 649 99 HOH HOH . I 4 HOH B 48 650 101 HOH HOH . I 4 HOH B 49 651 102 HOH HOH . I 4 HOH B 50 652 103 HOH HOH . I 4 HOH B 51 653 104 HOH HOH . I 4 HOH B 52 654 108 HOH HOH . I 4 HOH B 53 655 110 HOH HOH . I 4 HOH B 54 656 112 HOH HOH . I 4 HOH B 55 657 114 HOH HOH . I 4 HOH B 56 658 115 HOH HOH . I 4 HOH B 57 659 116 HOH HOH . I 4 HOH B 58 660 117 HOH HOH . I 4 HOH B 59 661 122 HOH HOH . I 4 HOH B 60 662 124 HOH HOH . I 4 HOH B 61 663 130 HOH HOH . I 4 HOH B 62 664 134 HOH HOH . I 4 HOH B 63 665 135 HOH HOH . I 4 HOH B 64 666 138 HOH HOH . I 4 HOH B 65 667 139 HOH HOH . I 4 HOH B 66 668 142 HOH HOH . I 4 HOH B 67 669 150 HOH HOH . I 4 HOH B 68 670 153 HOH HOH . I 4 HOH B 69 671 154 HOH HOH . I 4 HOH B 70 672 155 HOH HOH . I 4 HOH B 71 673 156 HOH HOH . I 4 HOH B 72 674 157 HOH HOH . I 4 HOH B 73 675 158 HOH HOH . I 4 HOH B 74 676 159 HOH HOH . I 4 HOH B 75 677 160 HOH HOH . I 4 HOH B 76 678 161 HOH HOH . I 4 HOH B 77 679 163 HOH HOH . I 4 HOH B 78 680 164 HOH HOH . I 4 HOH B 79 681 165 HOH HOH . I 4 HOH B 80 682 167 HOH HOH . I 4 HOH B 81 683 171 HOH HOH . I 4 HOH B 82 684 172 HOH HOH . I 4 HOH B 83 685 173 HOH HOH . I 4 HOH B 84 686 175 HOH HOH . I 4 HOH B 85 687 177 HOH HOH . I 4 HOH B 86 688 184 HOH HOH . I 4 HOH B 87 689 186 HOH HOH . I 4 HOH B 88 690 188 HOH HOH . I 4 HOH B 89 691 190 HOH HOH . I 4 HOH B 90 692 191 HOH HOH . I 4 HOH B 91 693 195 HOH HOH . I 4 HOH B 92 694 196 HOH HOH . I 4 HOH B 93 695 202 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 20.732 _atom_site.Cartn_y 15.764 _atom_site.Cartn_z 15.453 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 22.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 501 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 1 #