data_1V9A
#
_model_server_result.job_id            c9GGCIiqGCcCf-KP7tV37Q 
_model_server_result.datetime_utc      '2024-12-26 19:29:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1v9a 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":501}' 
#
_entry.id    1V9A 
#
_exptl.entry_id    1V9A 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1V9A 
_cell.length_a            59.982 
_cell.length_b            63.81 
_cell.length_c            132.422 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1V9A 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 265 n n 
N HN1 SAH sing 266 n n 
N HN2 SAH sing 267 n n 
CA CB SAH sing 268 n n 
CA C SAH sing 269 n n 
CA HA SAH sing 270 n n 
CB CG SAH sing 271 n n 
CB HB1 SAH sing 272 n n 
CB HB2 SAH sing 273 n n 
CG SD SAH sing 274 n n 
CG HG1 SAH sing 275 n n 
CG HG2 SAH sing 276 n n 
SD C5' SAH sing 277 n n 
C O SAH doub 278 n n 
C OXT SAH sing 279 n n 
OXT HXT SAH sing 280 n n 
C5' C4' SAH sing 281 n n 
C5' "H5'1" SAH sing 282 n n 
C5' "H5'2" SAH sing 283 n n 
C4' O4' SAH sing 284 n n 
C4' C3' SAH sing 285 n n 
C4' H4' SAH sing 286 n n 
O4' C1' SAH sing 287 n n 
C3' O3' SAH sing 288 n n 
C3' C2' SAH sing 289 n n 
C3' H3' SAH sing 290 n n 
O3' HO3' SAH sing 291 n n 
C2' O2' SAH sing 292 n n 
C2' C1' SAH sing 293 n n 
C2' H2' SAH sing 294 n n 
O2' HO2' SAH sing 295 n n 
C1' N9 SAH sing 296 n n 
C1' H1' SAH sing 297 n n 
N9 C8 SAH sing 298 n y 
N9 C4 SAH sing 299 n y 
C8 N7 SAH doub 300 n y 
C8 H8 SAH sing 301 n n 
N7 C5 SAH sing 302 n y 
C5 C6 SAH sing 303 n y 
C5 C4 SAH doub 304 n y 
C6 N6 SAH sing 305 n n 
C6 N1 SAH doub 306 n y 
N6 HN61 SAH sing 307 n n 
N6 HN62 SAH sing 308 n n 
N1 C2 SAH sing 309 n y 
C2 N3 SAH doub 310 n y 
C2 H2 SAH sing 311 n n 
N3 C4 SAH sing 312 n y 
#
_atom_sites.entry_id                     1V9A 
_atom_sites.fract_transf_matrix[1][1]    0.016672 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015672 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007552 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FLC A 1 601 601 FLC FLC . 
D 3 SAH A 1 501 501 SAH SAH . 
E 2 FLC B 1 602 602 FLC FLC . 
F 3 SAH B 1 502 502 SAH SAH . 
G 4 HOH A 1 602 4 HOH HOH . 
G 4 HOH A 2 603 5 HOH HOH . 
G 4 HOH A 3 604 10 HOH HOH . 
G 4 HOH A 4 605 11 HOH HOH . 
G 4 HOH A 5 606 13 HOH HOH . 
G 4 HOH A 6 607 14 HOH HOH . 
G 4 HOH A 7 608 15 HOH HOH . 
G 4 HOH A 8 609 20 HOH HOH . 
G 4 HOH A 9 610 23 HOH HOH . 
G 4 HOH A 10 611 24 HOH HOH . 
G 4 HOH A 11 612 26 HOH HOH . 
G 4 HOH A 12 613 27 HOH HOH . 
G 4 HOH A 13 614 30 HOH HOH . 
G 4 HOH A 14 615 31 HOH HOH . 
G 4 HOH A 15 616 34 HOH HOH . 
G 4 HOH A 16 617 37 HOH HOH . 
G 4 HOH A 17 618 38 HOH HOH . 
G 4 HOH A 18 619 40 HOH HOH . 
G 4 HOH A 19 620 44 HOH HOH . 
G 4 HOH A 20 621 46 HOH HOH . 
G 4 HOH A 21 622 47 HOH HOH . 
G 4 HOH A 22 623 53 HOH HOH . 
G 4 HOH A 23 624 58 HOH HOH . 
G 4 HOH A 24 625 62 HOH HOH . 
G 4 HOH A 25 626 64 HOH HOH . 
G 4 HOH A 26 627 68 HOH HOH . 
G 4 HOH A 27 628 69 HOH HOH . 
G 4 HOH A 28 629 71 HOH HOH . 
G 4 HOH A 29 630 73 HOH HOH . 
G 4 HOH A 30 631 74 HOH HOH . 
G 4 HOH A 31 632 75 HOH HOH . 
G 4 HOH A 32 633 76 HOH HOH . 
G 4 HOH A 33 634 79 HOH HOH . 
G 4 HOH A 34 635 81 HOH HOH . 
G 4 HOH A 35 636 82 HOH HOH . 
G 4 HOH A 36 637 86 HOH HOH . 
G 4 HOH A 37 638 88 HOH HOH . 
G 4 HOH A 38 639 90 HOH HOH . 
G 4 HOH A 39 640 94 HOH HOH . 
G 4 HOH A 40 641 95 HOH HOH . 
G 4 HOH A 41 642 96 HOH HOH . 
G 4 HOH A 42 643 98 HOH HOH . 
G 4 HOH A 43 644 99 HOH HOH . 
G 4 HOH A 44 645 102 HOH HOH . 
G 4 HOH A 45 646 103 HOH HOH . 
G 4 HOH A 46 647 104 HOH HOH . 
G 4 HOH A 47 648 105 HOH HOH . 
G 4 HOH A 48 649 107 HOH HOH . 
G 4 HOH A 49 650 110 HOH HOH . 
G 4 HOH A 50 651 111 HOH HOH . 
G 4 HOH A 51 652 112 HOH HOH . 
G 4 HOH A 52 653 118 HOH HOH . 
G 4 HOH A 53 654 119 HOH HOH . 
G 4 HOH A 54 655 120 HOH HOH . 
G 4 HOH A 55 656 123 HOH HOH . 
G 4 HOH A 56 657 124 HOH HOH . 
G 4 HOH A 57 658 126 HOH HOH . 
G 4 HOH A 58 659 127 HOH HOH . 
G 4 HOH A 59 660 130 HOH HOH . 
G 4 HOH A 60 661 133 HOH HOH . 
G 4 HOH A 61 662 134 HOH HOH . 
G 4 HOH A 62 663 135 HOH HOH . 
G 4 HOH A 63 664 137 HOH HOH . 
G 4 HOH A 64 665 140 HOH HOH . 
G 4 HOH A 65 666 141 HOH HOH . 
G 4 HOH A 66 667 142 HOH HOH . 
G 4 HOH A 67 668 144 HOH HOH . 
G 4 HOH A 68 669 146 HOH HOH . 
G 4 HOH A 69 670 147 HOH HOH . 
G 4 HOH A 70 671 149 HOH HOH . 
G 4 HOH A 71 672 151 HOH HOH . 
G 4 HOH A 72 673 152 HOH HOH . 
G 4 HOH A 73 674 153 HOH HOH . 
G 4 HOH A 74 675 155 HOH HOH . 
G 4 HOH A 75 676 157 HOH HOH . 
G 4 HOH A 76 677 158 HOH HOH . 
G 4 HOH A 77 678 160 HOH HOH . 
G 4 HOH A 78 679 162 HOH HOH . 
G 4 HOH A 79 680 168 HOH HOH . 
G 4 HOH A 80 681 169 HOH HOH . 
G 4 HOH A 81 682 173 HOH HOH . 
G 4 HOH A 82 683 174 HOH HOH . 
G 4 HOH A 83 684 175 HOH HOH . 
G 4 HOH A 84 685 177 HOH HOH . 
G 4 HOH A 85 686 179 HOH HOH . 
G 4 HOH A 86 687 180 HOH HOH . 
G 4 HOH A 87 688 182 HOH HOH . 
G 4 HOH A 88 689 185 HOH HOH . 
G 4 HOH A 89 690 186 HOH HOH . 
G 4 HOH A 90 691 188 HOH HOH . 
G 4 HOH A 91 692 194 HOH HOH . 
G 4 HOH A 92 693 200 HOH HOH . 
G 4 HOH A 93 694 201 HOH HOH . 
H 4 HOH B 1 603 1 HOH HOH . 
H 4 HOH B 2 604 2 HOH HOH . 
H 4 HOH B 3 605 3 HOH HOH . 
H 4 HOH B 4 606 6 HOH HOH . 
H 4 HOH B 5 607 7 HOH HOH . 
H 4 HOH B 6 608 8 HOH HOH . 
H 4 HOH B 7 609 9 HOH HOH . 
H 4 HOH B 8 610 12 HOH HOH . 
H 4 HOH B 9 611 16 HOH HOH . 
H 4 HOH B 10 612 17 HOH HOH . 
H 4 HOH B 11 613 18 HOH HOH . 
H 4 HOH B 12 614 19 HOH HOH . 
H 4 HOH B 13 615 21 HOH HOH . 
H 4 HOH B 14 616 22 HOH HOH . 
H 4 HOH B 15 617 25 HOH HOH . 
H 4 HOH B 16 618 28 HOH HOH . 
H 4 HOH B 17 619 29 HOH HOH . 
H 4 HOH B 18 620 32 HOH HOH . 
H 4 HOH B 19 621 33 HOH HOH . 
H 4 HOH B 20 622 35 HOH HOH . 
H 4 HOH B 21 623 36 HOH HOH . 
H 4 HOH B 22 624 39 HOH HOH . 
H 4 HOH B 23 625 41 HOH HOH . 
H 4 HOH B 24 626 42 HOH HOH . 
H 4 HOH B 25 627 43 HOH HOH . 
H 4 HOH B 26 628 45 HOH HOH . 
H 4 HOH B 27 629 48 HOH HOH . 
H 4 HOH B 28 630 49 HOH HOH . 
H 4 HOH B 29 631 50 HOH HOH . 
H 4 HOH B 30 632 51 HOH HOH . 
H 4 HOH B 31 633 52 HOH HOH . 
H 4 HOH B 32 634 54 HOH HOH . 
H 4 HOH B 33 635 55 HOH HOH . 
H 4 HOH B 34 636 56 HOH HOH . 
H 4 HOH B 35 637 57 HOH HOH . 
H 4 HOH B 36 638 59 HOH HOH . 
H 4 HOH B 37 639 60 HOH HOH . 
H 4 HOH B 38 640 61 HOH HOH . 
H 4 HOH B 39 641 63 HOH HOH . 
H 4 HOH B 40 642 65 HOH HOH . 
H 4 HOH B 41 643 66 HOH HOH . 
H 4 HOH B 42 644 67 HOH HOH . 
H 4 HOH B 43 645 70 HOH HOH . 
H 4 HOH B 44 646 72 HOH HOH . 
H 4 HOH B 45 647 77 HOH HOH . 
H 4 HOH B 46 648 78 HOH HOH . 
H 4 HOH B 47 649 80 HOH HOH . 
H 4 HOH B 48 650 83 HOH HOH . 
H 4 HOH B 49 651 84 HOH HOH . 
H 4 HOH B 50 652 85 HOH HOH . 
H 4 HOH B 51 653 87 HOH HOH . 
H 4 HOH B 52 654 89 HOH HOH . 
H 4 HOH B 53 655 91 HOH HOH . 
H 4 HOH B 54 656 92 HOH HOH . 
H 4 HOH B 55 657 93 HOH HOH . 
H 4 HOH B 56 658 97 HOH HOH . 
H 4 HOH B 57 659 100 HOH HOH . 
H 4 HOH B 58 660 101 HOH HOH . 
H 4 HOH B 59 661 106 HOH HOH . 
H 4 HOH B 60 662 108 HOH HOH . 
H 4 HOH B 61 663 109 HOH HOH . 
H 4 HOH B 62 664 113 HOH HOH . 
H 4 HOH B 63 665 114 HOH HOH . 
H 4 HOH B 64 666 115 HOH HOH . 
H 4 HOH B 65 667 116 HOH HOH . 
H 4 HOH B 66 668 117 HOH HOH . 
H 4 HOH B 67 669 121 HOH HOH . 
H 4 HOH B 68 670 122 HOH HOH . 
H 4 HOH B 69 671 125 HOH HOH . 
H 4 HOH B 70 672 128 HOH HOH . 
H 4 HOH B 71 673 129 HOH HOH . 
H 4 HOH B 72 674 131 HOH HOH . 
H 4 HOH B 73 675 132 HOH HOH . 
H 4 HOH B 74 676 136 HOH HOH . 
H 4 HOH B 75 677 138 HOH HOH . 
H 4 HOH B 76 678 139 HOH HOH . 
H 4 HOH B 77 679 143 HOH HOH . 
H 4 HOH B 78 680 145 HOH HOH . 
H 4 HOH B 79 681 148 HOH HOH . 
H 4 HOH B 80 682 150 HOH HOH . 
H 4 HOH B 81 683 154 HOH HOH . 
H 4 HOH B 82 684 156 HOH HOH . 
H 4 HOH B 83 685 159 HOH HOH . 
H 4 HOH B 84 686 161 HOH HOH . 
H 4 HOH B 85 687 163 HOH HOH . 
H 4 HOH B 86 688 164 HOH HOH . 
H 4 HOH B 87 689 165 HOH HOH . 
H 4 HOH B 88 690 166 HOH HOH . 
H 4 HOH B 89 691 167 HOH HOH . 
H 4 HOH B 90 692 170 HOH HOH . 
H 4 HOH B 91 693 171 HOH HOH . 
H 4 HOH B 92 694 172 HOH HOH . 
H 4 HOH B 93 695 176 HOH HOH . 
H 4 HOH B 94 696 178 HOH HOH . 
H 4 HOH B 95 697 181 HOH HOH . 
H 4 HOH B 96 698 183 HOH HOH . 
H 4 HOH B 97 699 184 HOH HOH . 
H 4 HOH B 98 700 187 HOH HOH . 
H 4 HOH B 99 701 189 HOH HOH . 
H 4 HOH B 100 702 190 HOH HOH . 
H 4 HOH B 101 703 191 HOH HOH . 
H 4 HOH B 102 704 192 HOH HOH . 
H 4 HOH B 103 705 193 HOH HOH . 
H 4 HOH B 104 706 195 HOH HOH . 
H 4 HOH B 105 707 196 HOH HOH . 
H 4 HOH B 106 708 197 HOH HOH . 
H 4 HOH B 107 709 198 HOH HOH . 
H 4 HOH B 108 710 199 HOH HOH . 
H 4 HOH B 109 711 202 HOH HOH . 
H 4 HOH B 110 712 203 HOH HOH . 
H 4 HOH B 111 713 204 HOH HOH . 
H 4 HOH B 112 714 205 HOH HOH . 
H 4 HOH B 113 715 206 HOH HOH . 
H 4 HOH B 114 716 207 HOH HOH . 
H 4 HOH B 115 717 208 HOH HOH . 
H 4 HOH B 116 718 209 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . D 3 -14.027 82.998 47.476 1 25.02 ? N SAH 501 A 1 
HETATM 2 C CA SAH . . . D 3 -15.196 82.598 46.664 1 30.09 ? CA SAH 501 A 1 
HETATM 3 C CB SAH . . . D 3 -14.921 83.149 45.203 1 24.81 ? CB SAH 501 A 1 
HETATM 4 C CG SAH . . . D 3 -14.893 84.728 45.064 1 35.09 ? CG SAH 501 A 1 
HETATM 5 S SD SAH . . . D 3 -14.563 85.229 43.358 1 35.84 ? SD SAH 501 A 1 
HETATM 6 C C SAH . . . D 3 -15.373 81.072 46.722 1 29.22 ? C SAH 501 A 1 
HETATM 7 O O SAH . . . D 3 -14.531 80.331 47.426 1 21.54 ? O SAH 501 A 1 
HETATM 8 O OXT SAH . . . D 3 -16.342 80.532 46.083 1 30.35 ? OXT SAH 501 A 1 
HETATM 9 C C5' SAH . . . D 3 -16.315 85.337 42.771 1 25.33 ? C5' SAH 501 A 1 
HETATM 10 C C4' SAH . . . D 3 -16.656 84.257 41.77 1 30.56 ? C4' SAH 501 A 1 
HETATM 11 O O4' SAH . . . D 3 -17.025 83.051 42.461 1 35.11 ? O4' SAH 501 A 1 
HETATM 12 C C3' SAH . . . D 3 -17.864 84.471 40.819 1 33.59 ? C3' SAH 501 A 1 
HETATM 13 O O3' SAH . . . D 3 -17.506 85.242 39.654 1 36.78 ? O3' SAH 501 A 1 
HETATM 14 C C2' SAH . . . D 3 -18.263 83.053 40.462 1 29.35 ? C2' SAH 501 A 1 
HETATM 15 O O2' SAH . . . D 3 -17.446 82.523 39.394 1 30.46 ? O2' SAH 501 A 1 
HETATM 16 C C1' SAH . . . D 3 -17.977 82.27 41.756 1 27.66 ? C1' SAH 501 A 1 
HETATM 17 N N9 SAH . . . D 3 -19.135 82.111 42.609 1 30.07 ? N9 SAH 501 A 1 
HETATM 18 C C8 SAH . . . D 3 -19.37 82.591 43.899 1 27.07 ? C8 SAH 501 A 1 
HETATM 19 N N7 SAH . . . D 3 -20.569 82.188 44.345 1 30.21 ? N7 SAH 501 A 1 
HETATM 20 C C5 SAH . . . D 3 -21.115 81.431 43.327 1 33.08 ? C5 SAH 501 A 1 
HETATM 21 C C6 SAH . . . D 3 -22.327 80.746 43.15 1 34.16 ? C6 SAH 501 A 1 
HETATM 22 N N6 SAH . . . D 3 -23.247 80.718 44.126 1 34.26 ? N6 SAH 501 A 1 
HETATM 23 N N1 SAH . . . D 3 -22.58 80.066 41.968 1 33.18 ? N1 SAH 501 A 1 
HETATM 24 C C2 SAH . . . D 3 -21.632 80.102 40.991 1 32.54 ? C2 SAH 501 A 1 
HETATM 25 N N3 SAH . . . D 3 -20.423 80.74 41.053 1 32.45 ? N3 SAH 501 A 1 
HETATM 26 C C4 SAH . . . D 3 -20.24 81.386 42.23 1 27.43 ? C4 SAH 501 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           266 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#