data_1V9A # _model_server_result.job_id n04uoJhz5fM43mE_eSZBZg _model_server_result.datetime_utc '2024-12-26 20:09:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v9a # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":502}' # _entry.id 1V9A # _exptl.entry_id 1V9A _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V9A _cell.length_a 59.982 _cell.length_b 63.81 _cell.length_c 132.422 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V9A _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 265 n n N HN1 SAH sing 266 n n N HN2 SAH sing 267 n n CA CB SAH sing 268 n n CA C SAH sing 269 n n CA HA SAH sing 270 n n CB CG SAH sing 271 n n CB HB1 SAH sing 272 n n CB HB2 SAH sing 273 n n CG SD SAH sing 274 n n CG HG1 SAH sing 275 n n CG HG2 SAH sing 276 n n SD C5' SAH sing 277 n n C O SAH doub 278 n n C OXT SAH sing 279 n n OXT HXT SAH sing 280 n n C5' C4' SAH sing 281 n n C5' "H5'1" SAH sing 282 n n C5' "H5'2" SAH sing 283 n n C4' O4' SAH sing 284 n n C4' C3' SAH sing 285 n n C4' H4' SAH sing 286 n n O4' C1' SAH sing 287 n n C3' O3' SAH sing 288 n n C3' C2' SAH sing 289 n n C3' H3' SAH sing 290 n n O3' HO3' SAH sing 291 n n C2' O2' SAH sing 292 n n C2' C1' SAH sing 293 n n C2' H2' SAH sing 294 n n O2' HO2' SAH sing 295 n n C1' N9 SAH sing 296 n n C1' H1' SAH sing 297 n n N9 C8 SAH sing 298 n y N9 C4 SAH sing 299 n y C8 N7 SAH doub 300 n y C8 H8 SAH sing 301 n n N7 C5 SAH sing 302 n y C5 C6 SAH sing 303 n y C5 C4 SAH doub 304 n y C6 N6 SAH sing 305 n n C6 N1 SAH doub 306 n y N6 HN61 SAH sing 307 n n N6 HN62 SAH sing 308 n n N1 C2 SAH sing 309 n y C2 N3 SAH doub 310 n y C2 H2 SAH sing 311 n n N3 C4 SAH sing 312 n y # _atom_sites.entry_id 1V9A _atom_sites.fract_transf_matrix[1][1] 0.016672 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015672 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007552 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FLC A 1 601 601 FLC FLC . D 3 SAH A 1 501 501 SAH SAH . E 2 FLC B 1 602 602 FLC FLC . F 3 SAH B 1 502 502 SAH SAH . G 4 HOH A 1 602 4 HOH HOH . G 4 HOH A 2 603 5 HOH HOH . G 4 HOH A 3 604 10 HOH HOH . G 4 HOH A 4 605 11 HOH HOH . G 4 HOH A 5 606 13 HOH HOH . G 4 HOH A 6 607 14 HOH HOH . G 4 HOH A 7 608 15 HOH HOH . G 4 HOH A 8 609 20 HOH HOH . G 4 HOH A 9 610 23 HOH HOH . G 4 HOH A 10 611 24 HOH HOH . G 4 HOH A 11 612 26 HOH HOH . G 4 HOH A 12 613 27 HOH HOH . G 4 HOH A 13 614 30 HOH HOH . G 4 HOH A 14 615 31 HOH HOH . G 4 HOH A 15 616 34 HOH HOH . G 4 HOH A 16 617 37 HOH HOH . G 4 HOH A 17 618 38 HOH HOH . G 4 HOH A 18 619 40 HOH HOH . G 4 HOH A 19 620 44 HOH HOH . G 4 HOH A 20 621 46 HOH HOH . G 4 HOH A 21 622 47 HOH HOH . G 4 HOH A 22 623 53 HOH HOH . G 4 HOH A 23 624 58 HOH HOH . G 4 HOH A 24 625 62 HOH HOH . G 4 HOH A 25 626 64 HOH HOH . G 4 HOH A 26 627 68 HOH HOH . G 4 HOH A 27 628 69 HOH HOH . G 4 HOH A 28 629 71 HOH HOH . G 4 HOH A 29 630 73 HOH HOH . G 4 HOH A 30 631 74 HOH HOH . G 4 HOH A 31 632 75 HOH HOH . G 4 HOH A 32 633 76 HOH HOH . G 4 HOH A 33 634 79 HOH HOH . G 4 HOH A 34 635 81 HOH HOH . G 4 HOH A 35 636 82 HOH HOH . G 4 HOH A 36 637 86 HOH HOH . G 4 HOH A 37 638 88 HOH HOH . G 4 HOH A 38 639 90 HOH HOH . G 4 HOH A 39 640 94 HOH HOH . G 4 HOH A 40 641 95 HOH HOH . G 4 HOH A 41 642 96 HOH HOH . G 4 HOH A 42 643 98 HOH HOH . G 4 HOH A 43 644 99 HOH HOH . G 4 HOH A 44 645 102 HOH HOH . G 4 HOH A 45 646 103 HOH HOH . G 4 HOH A 46 647 104 HOH HOH . G 4 HOH A 47 648 105 HOH HOH . G 4 HOH A 48 649 107 HOH HOH . G 4 HOH A 49 650 110 HOH HOH . G 4 HOH A 50 651 111 HOH HOH . G 4 HOH A 51 652 112 HOH HOH . G 4 HOH A 52 653 118 HOH HOH . G 4 HOH A 53 654 119 HOH HOH . G 4 HOH A 54 655 120 HOH HOH . G 4 HOH A 55 656 123 HOH HOH . G 4 HOH A 56 657 124 HOH HOH . G 4 HOH A 57 658 126 HOH HOH . G 4 HOH A 58 659 127 HOH HOH . G 4 HOH A 59 660 130 HOH HOH . G 4 HOH A 60 661 133 HOH HOH . G 4 HOH A 61 662 134 HOH HOH . G 4 HOH A 62 663 135 HOH HOH . G 4 HOH A 63 664 137 HOH HOH . G 4 HOH A 64 665 140 HOH HOH . G 4 HOH A 65 666 141 HOH HOH . G 4 HOH A 66 667 142 HOH HOH . G 4 HOH A 67 668 144 HOH HOH . G 4 HOH A 68 669 146 HOH HOH . G 4 HOH A 69 670 147 HOH HOH . G 4 HOH A 70 671 149 HOH HOH . G 4 HOH A 71 672 151 HOH HOH . G 4 HOH A 72 673 152 HOH HOH . G 4 HOH A 73 674 153 HOH HOH . G 4 HOH A 74 675 155 HOH HOH . G 4 HOH A 75 676 157 HOH HOH . G 4 HOH A 76 677 158 HOH HOH . G 4 HOH A 77 678 160 HOH HOH . G 4 HOH A 78 679 162 HOH HOH . G 4 HOH A 79 680 168 HOH HOH . G 4 HOH A 80 681 169 HOH HOH . G 4 HOH A 81 682 173 HOH HOH . G 4 HOH A 82 683 174 HOH HOH . G 4 HOH A 83 684 175 HOH HOH . G 4 HOH A 84 685 177 HOH HOH . G 4 HOH A 85 686 179 HOH HOH . G 4 HOH A 86 687 180 HOH HOH . G 4 HOH A 87 688 182 HOH HOH . G 4 HOH A 88 689 185 HOH HOH . G 4 HOH A 89 690 186 HOH HOH . G 4 HOH A 90 691 188 HOH HOH . G 4 HOH A 91 692 194 HOH HOH . G 4 HOH A 92 693 200 HOH HOH . G 4 HOH A 93 694 201 HOH HOH . H 4 HOH B 1 603 1 HOH HOH . H 4 HOH B 2 604 2 HOH HOH . H 4 HOH B 3 605 3 HOH HOH . H 4 HOH B 4 606 6 HOH HOH . H 4 HOH B 5 607 7 HOH HOH . H 4 HOH B 6 608 8 HOH HOH . H 4 HOH B 7 609 9 HOH HOH . H 4 HOH B 8 610 12 HOH HOH . H 4 HOH B 9 611 16 HOH HOH . H 4 HOH B 10 612 17 HOH HOH . H 4 HOH B 11 613 18 HOH HOH . H 4 HOH B 12 614 19 HOH HOH . H 4 HOH B 13 615 21 HOH HOH . H 4 HOH B 14 616 22 HOH HOH . H 4 HOH B 15 617 25 HOH HOH . H 4 HOH B 16 618 28 HOH HOH . H 4 HOH B 17 619 29 HOH HOH . H 4 HOH B 18 620 32 HOH HOH . H 4 HOH B 19 621 33 HOH HOH . H 4 HOH B 20 622 35 HOH HOH . H 4 HOH B 21 623 36 HOH HOH . H 4 HOH B 22 624 39 HOH HOH . H 4 HOH B 23 625 41 HOH HOH . H 4 HOH B 24 626 42 HOH HOH . H 4 HOH B 25 627 43 HOH HOH . H 4 HOH B 26 628 45 HOH HOH . H 4 HOH B 27 629 48 HOH HOH . H 4 HOH B 28 630 49 HOH HOH . H 4 HOH B 29 631 50 HOH HOH . H 4 HOH B 30 632 51 HOH HOH . H 4 HOH B 31 633 52 HOH HOH . H 4 HOH B 32 634 54 HOH HOH . H 4 HOH B 33 635 55 HOH HOH . H 4 HOH B 34 636 56 HOH HOH . H 4 HOH B 35 637 57 HOH HOH . H 4 HOH B 36 638 59 HOH HOH . H 4 HOH B 37 639 60 HOH HOH . H 4 HOH B 38 640 61 HOH HOH . H 4 HOH B 39 641 63 HOH HOH . H 4 HOH B 40 642 65 HOH HOH . H 4 HOH B 41 643 66 HOH HOH . H 4 HOH B 42 644 67 HOH HOH . H 4 HOH B 43 645 70 HOH HOH . H 4 HOH B 44 646 72 HOH HOH . H 4 HOH B 45 647 77 HOH HOH . H 4 HOH B 46 648 78 HOH HOH . H 4 HOH B 47 649 80 HOH HOH . H 4 HOH B 48 650 83 HOH HOH . H 4 HOH B 49 651 84 HOH HOH . H 4 HOH B 50 652 85 HOH HOH . H 4 HOH B 51 653 87 HOH HOH . H 4 HOH B 52 654 89 HOH HOH . H 4 HOH B 53 655 91 HOH HOH . H 4 HOH B 54 656 92 HOH HOH . H 4 HOH B 55 657 93 HOH HOH . H 4 HOH B 56 658 97 HOH HOH . H 4 HOH B 57 659 100 HOH HOH . H 4 HOH B 58 660 101 HOH HOH . H 4 HOH B 59 661 106 HOH HOH . H 4 HOH B 60 662 108 HOH HOH . H 4 HOH B 61 663 109 HOH HOH . H 4 HOH B 62 664 113 HOH HOH . H 4 HOH B 63 665 114 HOH HOH . H 4 HOH B 64 666 115 HOH HOH . H 4 HOH B 65 667 116 HOH HOH . H 4 HOH B 66 668 117 HOH HOH . H 4 HOH B 67 669 121 HOH HOH . H 4 HOH B 68 670 122 HOH HOH . H 4 HOH B 69 671 125 HOH HOH . H 4 HOH B 70 672 128 HOH HOH . H 4 HOH B 71 673 129 HOH HOH . H 4 HOH B 72 674 131 HOH HOH . H 4 HOH B 73 675 132 HOH HOH . H 4 HOH B 74 676 136 HOH HOH . H 4 HOH B 75 677 138 HOH HOH . H 4 HOH B 76 678 139 HOH HOH . H 4 HOH B 77 679 143 HOH HOH . H 4 HOH B 78 680 145 HOH HOH . H 4 HOH B 79 681 148 HOH HOH . H 4 HOH B 80 682 150 HOH HOH . H 4 HOH B 81 683 154 HOH HOH . H 4 HOH B 82 684 156 HOH HOH . H 4 HOH B 83 685 159 HOH HOH . H 4 HOH B 84 686 161 HOH HOH . H 4 HOH B 85 687 163 HOH HOH . H 4 HOH B 86 688 164 HOH HOH . H 4 HOH B 87 689 165 HOH HOH . H 4 HOH B 88 690 166 HOH HOH . H 4 HOH B 89 691 167 HOH HOH . H 4 HOH B 90 692 170 HOH HOH . H 4 HOH B 91 693 171 HOH HOH . H 4 HOH B 92 694 172 HOH HOH . H 4 HOH B 93 695 176 HOH HOH . H 4 HOH B 94 696 178 HOH HOH . H 4 HOH B 95 697 181 HOH HOH . H 4 HOH B 96 698 183 HOH HOH . H 4 HOH B 97 699 184 HOH HOH . H 4 HOH B 98 700 187 HOH HOH . H 4 HOH B 99 701 189 HOH HOH . H 4 HOH B 100 702 190 HOH HOH . H 4 HOH B 101 703 191 HOH HOH . H 4 HOH B 102 704 192 HOH HOH . H 4 HOH B 103 705 193 HOH HOH . H 4 HOH B 104 706 195 HOH HOH . H 4 HOH B 105 707 196 HOH HOH . H 4 HOH B 106 708 197 HOH HOH . H 4 HOH B 107 709 198 HOH HOH . H 4 HOH B 108 710 199 HOH HOH . H 4 HOH B 109 711 202 HOH HOH . H 4 HOH B 110 712 203 HOH HOH . H 4 HOH B 111 713 204 HOH HOH . H 4 HOH B 112 714 205 HOH HOH . H 4 HOH B 113 715 206 HOH HOH . H 4 HOH B 114 716 207 HOH HOH . H 4 HOH B 115 717 208 HOH HOH . H 4 HOH B 116 718 209 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . F 3 -12.086 64.75 50.295 1 25.75 ? N SAH 502 B 1 HETATM 2 C CA SAH . . . F 3 -11.067 65.105 51.299 1 23.47 ? CA SAH 502 B 1 HETATM 3 C CB SAH . . . F 3 -9.75 64.424 50.802 1 25.03 ? CB SAH 502 B 1 HETATM 4 C CG SAH . . . F 3 -9.692 62.858 50.971 1 25.84 ? CG SAH 502 B 1 HETATM 5 S SD SAH . . . F 3 -8.127 62.208 50.352 1 28.23 ? SD SAH 502 B 1 HETATM 6 C C SAH . . . F 3 -10.957 66.63 51.419 1 24.25 ? C SAH 502 B 1 HETATM 7 O O SAH . . . F 3 -11.712 67.397 50.677 1 21.43 ? O SAH 502 B 1 HETATM 8 O OXT SAH . . . F 3 -10.126 67.14 52.25 1 25.01 ? OXT SAH 502 B 1 HETATM 9 C C5' SAH . . . F 3 -7.218 62.113 51.959 1 29.48 ? C5' SAH 502 B 1 HETATM 10 C C4' SAH . . . F 3 -6.085 63.111 52.033 1 25.16 ? C4' SAH 502 B 1 HETATM 11 O O4' SAH . . . F 3 -6.616 64.424 52.387 1 28.28 ? O4' SAH 502 B 1 HETATM 12 C C3' SAH . . . F 3 -5.007 62.893 53.118 1 24.47 ? C3' SAH 502 B 1 HETATM 13 O O3' SAH . . . F 3 -3.98 61.974 52.721 1 23.16 ? O3' SAH 502 B 1 HETATM 14 C C2' SAH . . . F 3 -4.465 64.294 53.326 1 22.71 ? C2' SAH 502 B 1 HETATM 15 O O2' SAH . . . F 3 -3.531 64.642 52.265 1 23.75 ? O2' SAH 502 B 1 HETATM 16 C C1' SAH . . . F 3 -5.702 65.165 53.183 1 22.49 ? C1' SAH 502 B 1 HETATM 17 N N9 SAH . . . F 3 -6.38 65.498 54.441 1 25.62 ? N9 SAH 502 B 1 HETATM 18 C C8 SAH . . . F 3 -7.688 65.231 54.837 1 20.38 ? C8 SAH 502 B 1 HETATM 19 N N7 SAH . . . F 3 -7.955 65.795 56.036 1 25.31 ? N7 SAH 502 B 1 HETATM 20 C C5 SAH . . . F 3 -6.776 66.41 56.421 1 20.81 ? C5 SAH 502 B 1 HETATM 21 C C6 SAH . . . F 3 -6.388 67.191 57.534 1 22.93 ? C6 SAH 502 B 1 HETATM 22 N N6 SAH . . . F 3 -7.234 67.446 58.526 1 22.54 ? N6 SAH 502 B 1 HETATM 23 N N1 SAH . . . F 3 -5.1 67.673 57.623 1 23.47 ? N1 SAH 502 B 1 HETATM 24 C C2 SAH . . . F 3 -4.24 67.411 56.601 1 27.55 ? C2 SAH 502 B 1 HETATM 25 N N3 SAH . . . F 3 -4.512 66.697 55.479 1 24.55 ? N3 SAH 502 B 1 HETATM 26 C C4 SAH . . . F 3 -5.79 66.243 55.439 1 25.06 ? C4 SAH 502 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 242 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 26 #