data_1V9L # _model_server_result.job_id oMFUTfWtZCVJbQvlAJtaug _model_server_result.datetime_utc '2024-12-15 07:26:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v9l # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":5430}' # _entry.id 1V9L # _exptl.entry_id 1V9L _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1V9L _cell.length_a 104.21 _cell.length_b 165.88 _cell.length_c 181.35 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V9L _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1V9L _atom_sites.fract_transf_matrix[1][1] 0.009596 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 NAD A 1 430 430 NAD NAD . H 2 NAD B 1 1430 430 NAD NAD . I 2 NAD C 1 2430 430 NAD NAD . J 2 NAD D 1 3430 430 NAD NAD . K 2 NAD E 1 4430 430 NAD NAD . L 2 NAD F 1 5430 430 NAD NAD . M 3 HOH A 1 431 10 HOH TIP . M 3 HOH A 2 432 16 HOH TIP . M 3 HOH A 3 433 20 HOH TIP . M 3 HOH A 4 434 22 HOH TIP . M 3 HOH A 5 435 37 HOH TIP . M 3 HOH A 6 436 39 HOH TIP . M 3 HOH A 7 437 45 HOH TIP . M 3 HOH A 8 438 49 HOH TIP . M 3 HOH A 9 439 50 HOH TIP . M 3 HOH A 10 440 51 HOH TIP . M 3 HOH A 11 441 52 HOH TIP . M 3 HOH A 12 442 53 HOH TIP . M 3 HOH A 13 443 62 HOH TIP . M 3 HOH A 14 444 74 HOH TIP . M 3 HOH A 15 445 79 HOH TIP . M 3 HOH A 16 446 114 HOH TIP . M 3 HOH A 17 447 128 HOH TIP . N 3 HOH B 1 1431 11 HOH TIP . N 3 HOH B 2 1432 17 HOH TIP . N 3 HOH B 3 1433 21 HOH TIP . N 3 HOH B 4 1434 28 HOH TIP . N 3 HOH B 5 1435 31 HOH TIP . N 3 HOH B 6 1436 34 HOH TIP . N 3 HOH B 7 1437 36 HOH TIP . N 3 HOH B 8 1438 55 HOH TIP . N 3 HOH B 9 1439 59 HOH TIP . N 3 HOH B 10 1440 90 HOH TIP . N 3 HOH B 11 1441 93 HOH TIP . N 3 HOH B 12 1442 94 HOH TIP . N 3 HOH B 13 1443 101 HOH TIP . N 3 HOH B 14 1444 108 HOH TIP . N 3 HOH B 15 1445 111 HOH TIP . N 3 HOH B 16 1446 120 HOH TIP . N 3 HOH B 17 1447 126 HOH TIP . O 3 HOH C 1 2431 8 HOH TIP . O 3 HOH C 2 2432 13 HOH TIP . O 3 HOH C 3 2433 15 HOH TIP . O 3 HOH C 4 2434 32 HOH TIP . O 3 HOH C 5 2435 33 HOH TIP . O 3 HOH C 6 2436 40 HOH TIP . O 3 HOH C 7 2437 43 HOH TIP . O 3 HOH C 8 2438 56 HOH TIP . O 3 HOH C 9 2439 57 HOH TIP . O 3 HOH C 10 2440 61 HOH TIP . O 3 HOH C 11 2441 66 HOH TIP . O 3 HOH C 12 2442 86 HOH TIP . O 3 HOH C 13 2443 92 HOH TIP . O 3 HOH C 14 2444 100 HOH TIP . O 3 HOH C 15 2445 116 HOH TIP . O 3 HOH C 16 2446 122 HOH TIP . P 3 HOH D 1 3431 9 HOH TIP . P 3 HOH D 2 3432 14 HOH TIP . P 3 HOH D 3 3433 23 HOH TIP . P 3 HOH D 4 3434 35 HOH TIP . P 3 HOH D 5 3435 38 HOH TIP . P 3 HOH D 6 3436 41 HOH TIP . P 3 HOH D 7 3437 42 HOH TIP . P 3 HOH D 8 3438 46 HOH TIP . P 3 HOH D 9 3439 47 HOH TIP . P 3 HOH D 10 3440 58 HOH TIP . P 3 HOH D 11 3441 73 HOH TIP . P 3 HOH D 12 3442 82 HOH TIP . P 3 HOH D 13 3443 84 HOH TIP . P 3 HOH D 14 3444 89 HOH TIP . P 3 HOH D 15 3445 97 HOH TIP . P 3 HOH D 16 3446 98 HOH TIP . P 3 HOH D 17 3447 99 HOH TIP . P 3 HOH D 18 3448 106 HOH TIP . P 3 HOH D 19 3449 110 HOH TIP . P 3 HOH D 20 3450 112 HOH TIP . P 3 HOH D 21 3451 115 HOH TIP . P 3 HOH D 22 3452 117 HOH TIP . P 3 HOH D 23 3453 124 HOH TIP . P 3 HOH D 24 3454 129 HOH TIP . Q 3 HOH E 1 4431 1 HOH TIP . Q 3 HOH E 2 4432 3 HOH TIP . Q 3 HOH E 3 4433 4 HOH TIP . Q 3 HOH E 4 4434 6 HOH TIP . Q 3 HOH E 5 4435 7 HOH TIP . Q 3 HOH E 6 4436 12 HOH TIP . Q 3 HOH E 7 4437 18 HOH TIP . Q 3 HOH E 8 4438 25 HOH TIP . Q 3 HOH E 9 4439 26 HOH TIP . Q 3 HOH E 10 4440 27 HOH TIP . Q 3 HOH E 11 4441 48 HOH TIP . Q 3 HOH E 12 4442 54 HOH TIP . Q 3 HOH E 13 4443 67 HOH TIP . Q 3 HOH E 14 4444 68 HOH TIP . Q 3 HOH E 15 4445 70 HOH TIP . Q 3 HOH E 16 4446 71 HOH TIP . Q 3 HOH E 17 4447 76 HOH TIP . Q 3 HOH E 18 4448 80 HOH TIP . Q 3 HOH E 19 4449 81 HOH TIP . Q 3 HOH E 20 4450 83 HOH TIP . Q 3 HOH E 21 4451 88 HOH TIP . Q 3 HOH E 22 4452 95 HOH TIP . Q 3 HOH E 23 4453 102 HOH TIP . Q 3 HOH E 24 4454 103 HOH TIP . Q 3 HOH E 25 4455 104 HOH TIP . Q 3 HOH E 26 4456 107 HOH TIP . Q 3 HOH E 27 4457 113 HOH TIP . Q 3 HOH E 28 4458 119 HOH TIP . Q 3 HOH E 29 4459 121 HOH TIP . Q 3 HOH E 30 4460 123 HOH TIP . Q 3 HOH E 31 4461 125 HOH TIP . R 3 HOH F 1 5431 2 HOH TIP . R 3 HOH F 2 5432 5 HOH TIP . R 3 HOH F 3 5433 19 HOH TIP . R 3 HOH F 4 5434 24 HOH TIP . R 3 HOH F 5 5435 29 HOH TIP . R 3 HOH F 6 5436 30 HOH TIP . R 3 HOH F 7 5437 44 HOH TIP . R 3 HOH F 8 5438 60 HOH TIP . R 3 HOH F 9 5439 63 HOH TIP . R 3 HOH F 10 5440 64 HOH TIP . R 3 HOH F 11 5441 65 HOH TIP . R 3 HOH F 12 5442 69 HOH TIP . R 3 HOH F 13 5443 72 HOH TIP . R 3 HOH F 14 5444 75 HOH TIP . R 3 HOH F 15 5445 77 HOH TIP . R 3 HOH F 16 5446 78 HOH TIP . R 3 HOH F 17 5447 85 HOH TIP . R 3 HOH F 18 5448 87 HOH TIP . R 3 HOH F 19 5449 91 HOH TIP . R 3 HOH F 20 5450 96 HOH TIP . R 3 HOH F 21 5451 105 HOH TIP . R 3 HOH F 22 5452 109 HOH TIP . R 3 HOH F 23 5453 118 HOH TIP . R 3 HOH F 24 5454 127 HOH TIP . R 3 HOH F 25 5455 130 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . L 2 90.01 97.492 86.48 1 51.36 ? PA NAD 5430 F 1 HETATM 2 O O1A NAD . . . L 2 90.124 96.032 86.305 1 51.28 ? O1A NAD 5430 F 1 HETATM 3 O O2A NAD . . . L 2 89.105 98.039 87.533 1 51.06 ? O2A NAD 5430 F 1 HETATM 4 O O5B NAD . . . L 2 91.489 98.009 86.67 1 50.33 ? O5B NAD 5430 F 1 HETATM 5 C C5B NAD . . . L 2 91.867 99.419 86.645 1 51.74 ? C5B NAD 5430 F 1 HETATM 6 C C4B NAD . . . L 2 93.112 99.522 87.486 1 53.66 ? C4B NAD 5430 F 1 HETATM 7 O O4B NAD . . . L 2 93.518 100.937 87.471 1 54.26 ? O4B NAD 5430 F 1 HETATM 8 C C3B NAD . . . L 2 92.932 99.193 89.004 1 54.53 ? C3B NAD 5430 F 1 HETATM 9 O O3B NAD . . . L 2 93.841 98.11 89.383 1 56.65 ? O3B NAD 5430 F 1 HETATM 10 C C2B NAD . . . L 2 93.223 100.48 89.743 1 54.82 ? C2B NAD 5430 F 1 HETATM 11 O O2B NAD . . . L 2 93.679 100.397 91.042 1 54.02 ? O2B NAD 5430 F 1 HETATM 12 C C1B NAD . . . L 2 94.152 101.158 88.717 1 54.93 ? C1B NAD 5430 F 1 HETATM 13 N N9A NAD . . . L 2 94.242 102.597 88.916 1 55.74 ? N9A NAD 5430 F 1 HETATM 14 C C8A NAD . . . L 2 93.298 103.57 89.24 1 56.47 ? C8A NAD 5430 F 1 HETATM 15 N N7A NAD . . . L 2 93.802 104.802 89.329 1 57.64 ? N7A NAD 5430 F 1 HETATM 16 C C5A NAD . . . L 2 95.128 104.71 89.064 1 57.49 ? C5A NAD 5430 F 1 HETATM 17 C C6A NAD . . . L 2 96.229 105.715 89.003 1 57.42 ? C6A NAD 5430 F 1 HETATM 18 N N6A NAD . . . L 2 96.041 106.99 89.229 1 59.01 ? N6A NAD 5430 F 1 HETATM 19 N N1A NAD . . . L 2 97.482 105.197 88.689 1 56.34 ? N1A NAD 5430 F 1 HETATM 20 C C2A NAD . . . L 2 97.745 103.905 88.447 1 57.43 ? C2A NAD 5430 F 1 HETATM 21 N N3A NAD . . . L 2 96.749 102.91 88.488 1 56.76 ? N3A NAD 5430 F 1 HETATM 22 C C4A NAD . . . L 2 95.446 103.349 88.8 1 56.28 ? C4A NAD 5430 F 1 HETATM 23 O O3 NAD . . . L 2 89.538 98.153 85.115 1 52.33 ? O3 NAD 5430 F 1 HETATM 24 P PN NAD . . . L 2 89.791 97.808 83.536 1 53.54 ? PN NAD 5430 F 1 HETATM 25 O O1N NAD . . . L 2 88.842 96.786 83.103 1 54.06 ? O1N NAD 5430 F 1 HETATM 26 O O2N NAD . . . L 2 91.258 97.542 83.383 1 52.3 ? O2N NAD 5430 F 1 HETATM 27 O O5D NAD . . . L 2 89.291 99.216 82.881 1 54.82 ? O5D NAD 5430 F 1 HETATM 28 C C5D NAD . . . L 2 90.009 100.476 83.104 1 59.18 ? C5D NAD 5430 F 1 HETATM 29 C C4D NAD . . . L 2 89.482 101.524 82.18 1 62.44 ? C4D NAD 5430 F 1 HETATM 30 O O4D NAD . . . L 2 89.372 100.942 80.787 1 64.13 ? O4D NAD 5430 F 1 HETATM 31 C C3D NAD . . . L 2 88.041 102.04 82.477 1 62.41 ? C3D NAD 5430 F 1 HETATM 32 O O3D NAD . . . L 2 87.958 103.468 82.194 1 61.35 ? O3D NAD 5430 F 1 HETATM 33 C C2D NAD . . . L 2 87.135 101.248 81.52 1 63.15 ? C2D NAD 5430 F 1 HETATM 34 O O2D NAD . . . L 2 85.875 101.79 81.3 1 63.64 ? O2D NAD 5430 F 1 HETATM 35 C C1D NAD . . . L 2 88.045 101.171 80.243 1 64.72 ? C1D NAD 5430 F 1 HETATM 36 N N1N NAD . . . L 2 87.706 100.073 79.26 1 66.67 ? N1N NAD 5430 F 1 HETATM 37 C C2N NAD . . . L 2 87.67 98.743 79.846 1 68.35 ? C2N NAD 5430 F 1 HETATM 38 C C3N NAD . . . L 2 86.935 97.742 79.331 1 69.84 ? C3N NAD 5430 F 1 HETATM 39 C C7N NAD . . . L 2 86.93 96.358 79.94 1 71.09 ? C7N NAD 5430 F 1 HETATM 40 O O7N NAD . . . L 2 85.832 95.845 80.243 1 74.98 ? O7N NAD 5430 F 1 HETATM 41 N N7N NAD . . . L 2 88.09 95.719 80.126 1 70.43 ? N7N NAD 5430 F 1 HETATM 42 C C4N NAD . . . L 2 86.078 97.972 78.082 1 69.46 ? C4N NAD 5430 F 1 HETATM 43 C C5N NAD . . . L 2 85.593 99.383 78.081 1 69.46 ? C5N NAD 5430 F 1 HETATM 44 C C6N NAD . . . L 2 86.584 100.387 78.356 1 67.82 ? C6N NAD 5430 F 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 44 #