data_1V9N # _model_server_result.job_id qgU9MlVayQ3OqWp-5i7lrQ _model_server_result.datetime_utc '2025-02-07 05:52:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1v9n # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":403}' # _entry.id 1V9N # _exptl.entry_id 1V9N _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1V9N _cell.length_a 74.19 _cell.length_b 74.19 _cell.length_c 127.28 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1V9N _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_676 x-y+1,-y+2,-z+5/3 1 0 0 0 -1 0 0 0 -1 0 128.500849 212.133333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C MSE 1 A MSE 1 1_555 A N PHE 2 A PHE 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale2 A C VAL 45 A VAL 45 1_555 A N MSE 46 A MSE 46 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C MSE 46 A MSE 46 1_555 A N ALA 47 A ALA 47 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale4 A C SER 104 A SER 104 1_555 A N MSE 105 A MSE 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C MSE 105 A MSE 105 1_555 A N LYS 106 A LYS 106 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 A C LEU 136 A LEU 136 1_555 A N MSE 137 A MSE 137 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale7 A C MSE 137 A MSE 137 1_555 A N ALA 138 A ALA 138 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale8 A C GLY 142 A GLY 142 1_555 A N MSE 143 A MSE 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale9 A C MSE 143 A MSE 143 1_555 A N ILE 144 A ILE 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 A C SER 147 A SER 147 1_555 A N MSE 148 A MSE 148 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 A C MSE 148 A MSE 148 1_555 A N THR 149 A THR 149 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale12 A C ASP 184 A ASP 184 1_555 A N MSE 185 A MSE 185 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 A C MSE 185 A MSE 185 1_555 A N ALA 186 A ALA 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale14 A C LEU 250 A LEU 250 1_555 A N MSE 251 A MSE 251 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale15 A C MSE 251 A MSE 251 1_555 A N VAL 252 A VAL 252 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale16 A C PHE 282 A PHE 282 1_555 A N MSE 283 A MSE 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale17 A C MSE 283 A MSE 283 1_555 A N VAL 284 A VAL 284 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale18 A C GLN 302 A GLN 302 1_555 A N MSE 303 A MSE 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale19 A C MSE 303 A MSE 303 1_555 A N ILE 304 A ILE 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale20 A C THR 329 A THR 329 1_555 A N MSE 330 A MSE 330 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 A C MSE 330 A MSE 330 1_555 A N GLU 331 A GLU 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 1V9N _atom_sites.fract_transf_matrix[1][1] 0.013479 _atom_sites.fract_transf_matrix[1][2] 0.007782 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015564 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007857 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 401 401 NDP NDP . C 3 GOL A 1 403 403 GOL GOL . D 4 HOH A 1 404 1 HOH HOH . D 4 HOH A 2 405 2 HOH HOH . D 4 HOH A 3 406 3 HOH HOH . D 4 HOH A 4 407 4 HOH HOH . D 4 HOH A 5 408 5 HOH HOH . D 4 HOH A 6 409 6 HOH HOH . D 4 HOH A 7 410 7 HOH HOH . D 4 HOH A 8 411 8 HOH HOH . D 4 HOH A 9 412 9 HOH HOH . D 4 HOH A 10 413 10 HOH HOH . D 4 HOH A 11 414 11 HOH HOH . D 4 HOH A 12 415 12 HOH HOH . D 4 HOH A 13 416 13 HOH HOH . D 4 HOH A 14 417 14 HOH HOH . D 4 HOH A 15 418 15 HOH HOH . D 4 HOH A 16 419 16 HOH HOH . D 4 HOH A 17 420 17 HOH HOH . D 4 HOH A 18 421 18 HOH HOH . D 4 HOH A 19 422 19 HOH HOH . D 4 HOH A 20 423 20 HOH HOH . D 4 HOH A 21 424 21 HOH HOH . D 4 HOH A 22 425 22 HOH HOH . D 4 HOH A 23 426 23 HOH HOH . D 4 HOH A 24 427 24 HOH HOH . D 4 HOH A 25 428 25 HOH HOH . D 4 HOH A 26 429 26 HOH HOH . D 4 HOH A 27 430 27 HOH HOH . D 4 HOH A 28 431 28 HOH HOH . D 4 HOH A 29 432 29 HOH HOH . D 4 HOH A 30 433 30 HOH HOH . D 4 HOH A 31 434 31 HOH HOH . D 4 HOH A 32 435 32 HOH HOH . D 4 HOH A 33 436 33 HOH HOH . D 4 HOH A 34 437 34 HOH HOH . D 4 HOH A 35 438 35 HOH HOH . D 4 HOH A 36 439 36 HOH HOH . D 4 HOH A 37 440 37 HOH HOH . D 4 HOH A 38 441 38 HOH HOH . D 4 HOH A 39 442 39 HOH HOH . D 4 HOH A 40 443 40 HOH HOH . D 4 HOH A 41 444 41 HOH HOH . D 4 HOH A 42 445 42 HOH HOH . D 4 HOH A 43 446 43 HOH HOH . D 4 HOH A 44 447 44 HOH HOH . D 4 HOH A 45 448 45 HOH HOH . D 4 HOH A 46 449 46 HOH HOH . D 4 HOH A 47 450 47 HOH HOH . D 4 HOH A 48 451 48 HOH HOH . D 4 HOH A 49 452 49 HOH HOH . D 4 HOH A 50 453 50 HOH HOH . D 4 HOH A 51 454 51 HOH HOH . D 4 HOH A 52 455 52 HOH HOH . D 4 HOH A 53 456 53 HOH HOH . D 4 HOH A 54 457 54 HOH HOH . D 4 HOH A 55 458 55 HOH HOH . D 4 HOH A 56 459 56 HOH HOH . D 4 HOH A 57 460 57 HOH HOH . D 4 HOH A 58 461 58 HOH HOH . D 4 HOH A 59 462 59 HOH HOH . D 4 HOH A 60 463 60 HOH HOH . D 4 HOH A 61 464 61 HOH HOH . D 4 HOH A 62 465 62 HOH HOH . D 4 HOH A 63 466 63 HOH HOH . D 4 HOH A 64 467 64 HOH HOH . D 4 HOH A 65 468 65 HOH HOH . D 4 HOH A 66 469 66 HOH HOH . D 4 HOH A 67 470 67 HOH HOH . D 4 HOH A 68 471 68 HOH HOH . D 4 HOH A 69 472 69 HOH HOH . D 4 HOH A 70 473 70 HOH HOH . D 4 HOH A 71 474 71 HOH HOH . D 4 HOH A 72 475 72 HOH HOH . D 4 HOH A 73 476 73 HOH HOH . D 4 HOH A 74 477 74 HOH HOH . D 4 HOH A 75 478 75 HOH HOH . D 4 HOH A 76 479 76 HOH HOH . D 4 HOH A 77 480 77 HOH HOH . D 4 HOH A 78 481 78 HOH HOH . D 4 HOH A 79 482 79 HOH HOH . D 4 HOH A 80 483 80 HOH HOH . D 4 HOH A 81 484 81 HOH HOH . D 4 HOH A 82 485 82 HOH HOH . D 4 HOH A 83 486 83 HOH HOH . D 4 HOH A 84 487 84 HOH HOH . D 4 HOH A 85 488 85 HOH HOH . D 4 HOH A 86 489 86 HOH HOH . D 4 HOH A 87 490 87 HOH HOH . D 4 HOH A 88 491 88 HOH HOH . D 4 HOH A 89 492 89 HOH HOH . D 4 HOH A 90 493 90 HOH HOH . D 4 HOH A 91 494 91 HOH HOH . D 4 HOH A 92 495 92 HOH HOH . D 4 HOH A 93 496 93 HOH HOH . D 4 HOH A 94 497 94 HOH HOH . D 4 HOH A 95 498 95 HOH HOH . D 4 HOH A 96 499 96 HOH HOH . D 4 HOH A 97 500 97 HOH HOH . D 4 HOH A 98 501 98 HOH HOH . D 4 HOH A 99 502 99 HOH HOH . D 4 HOH A 100 503 100 HOH HOH . D 4 HOH A 101 504 101 HOH HOH . D 4 HOH A 102 505 102 HOH HOH . D 4 HOH A 103 506 103 HOH HOH . D 4 HOH A 104 507 104 HOH HOH . D 4 HOH A 105 508 105 HOH HOH . D 4 HOH A 106 509 106 HOH HOH . D 4 HOH A 107 510 107 HOH HOH . D 4 HOH A 108 511 108 HOH HOH . D 4 HOH A 109 512 109 HOH HOH . D 4 HOH A 110 513 110 HOH HOH . D 4 HOH A 111 514 111 HOH HOH . D 4 HOH A 112 515 112 HOH HOH . D 4 HOH A 113 516 113 HOH HOH . D 4 HOH A 114 517 114 HOH HOH . D 4 HOH A 115 518 115 HOH HOH . D 4 HOH A 116 519 116 HOH HOH . D 4 HOH A 117 520 117 HOH HOH . D 4 HOH A 118 521 118 HOH HOH . D 4 HOH A 119 522 119 HOH HOH . D 4 HOH A 120 523 120 HOH HOH . D 4 HOH A 121 524 121 HOH HOH . D 4 HOH A 122 525 122 HOH HOH . D 4 HOH A 123 526 123 HOH HOH . D 4 HOH A 124 527 124 HOH HOH . D 4 HOH A 125 528 125 HOH HOH . D 4 HOH A 126 529 126 HOH HOH . D 4 HOH A 127 530 127 HOH HOH . D 4 HOH A 128 531 128 HOH HOH . D 4 HOH A 129 532 129 HOH HOH . D 4 HOH A 130 533 130 HOH HOH . D 4 HOH A 131 534 131 HOH HOH . D 4 HOH A 132 535 132 HOH HOH . D 4 HOH A 133 536 133 HOH HOH . D 4 HOH A 134 537 134 HOH HOH . D 4 HOH A 135 538 135 HOH HOH . D 4 HOH A 136 539 136 HOH HOH . D 4 HOH A 137 540 137 HOH HOH . D 4 HOH A 138 541 138 HOH HOH . D 4 HOH A 139 542 139 HOH HOH . D 4 HOH A 140 543 140 HOH HOH . D 4 HOH A 141 544 141 HOH HOH . D 4 HOH A 142 545 142 HOH HOH . D 4 HOH A 143 546 143 HOH HOH . D 4 HOH A 144 547 144 HOH HOH . D 4 HOH A 145 548 145 HOH HOH . D 4 HOH A 146 549 146 HOH HOH . D 4 HOH A 147 550 147 HOH HOH . D 4 HOH A 148 551 148 HOH HOH . D 4 HOH A 149 552 149 HOH HOH . D 4 HOH A 150 553 150 HOH HOH . D 4 HOH A 151 554 151 HOH HOH . D 4 HOH A 152 555 152 HOH HOH . D 4 HOH A 153 556 153 HOH HOH . D 4 HOH A 154 557 154 HOH HOH . D 4 HOH A 155 558 155 HOH HOH . D 4 HOH A 156 559 156 HOH HOH . D 4 HOH A 157 560 157 HOH HOH . D 4 HOH A 158 561 158 HOH HOH . D 4 HOH A 159 562 159 HOH HOH . D 4 HOH A 160 563 160 HOH HOH . D 4 HOH A 161 564 161 HOH HOH . D 4 HOH A 162 565 162 HOH HOH . D 4 HOH A 163 566 163 HOH HOH . D 4 HOH A 164 567 164 HOH HOH . D 4 HOH A 165 568 165 HOH HOH . D 4 HOH A 166 569 166 HOH HOH . D 4 HOH A 167 570 167 HOH HOH . D 4 HOH A 168 571 168 HOH HOH . D 4 HOH A 169 572 169 HOH HOH . D 4 HOH A 170 573 170 HOH HOH . D 4 HOH A 171 574 171 HOH HOH . D 4 HOH A 172 575 172 HOH HOH . D 4 HOH A 173 576 173 HOH HOH . D 4 HOH A 174 577 174 HOH HOH . D 4 HOH A 175 578 175 HOH HOH . D 4 HOH A 176 579 176 HOH HOH . D 4 HOH A 177 580 177 HOH HOH . D 4 HOH A 178 581 178 HOH HOH . D 4 HOH A 179 582 179 HOH HOH . D 4 HOH A 180 583 180 HOH HOH . D 4 HOH A 181 584 181 HOH HOH . D 4 HOH A 182 585 182 HOH HOH . D 4 HOH A 183 586 183 HOH HOH . D 4 HOH A 184 587 184 HOH HOH . D 4 HOH A 185 588 185 HOH HOH . D 4 HOH A 186 589 186 HOH HOH . D 4 HOH A 187 590 187 HOH HOH . D 4 HOH A 188 591 188 HOH HOH . D 4 HOH A 189 592 189 HOH HOH . D 4 HOH A 190 593 190 HOH HOH . D 4 HOH A 191 594 191 HOH HOH . D 4 HOH A 192 595 192 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 27.788 51.759 106.758 1 43.92 ? C1 GOL 403 A 1 HETATM 2 O O1 GOL . . . C 3 28.385 50.568 107.65 1 42.56 ? O1 GOL 403 A 1 HETATM 3 C C2 GOL . . . C 3 26.751 52.601 107.142 1 44.89 ? C2 GOL 403 A 1 HETATM 4 O O2 GOL . . . C 3 26.798 52.863 108.461 1 45.38 ? O2 GOL 403 A 1 HETATM 5 C C3 GOL . . . C 3 26.088 52.89 106.183 1 44.05 ? C3 GOL 403 A 1 HETATM 6 O O3 GOL . . . C 3 25.58 52.941 104.715 1 45.27 ? O3 GOL 403 A 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #