data_1VAF
#
_model_server_result.job_id            tIDMCGOqwg3qamIvoBV5UA 
_model_server_result.datetime_utc      '2024-11-04 23:08:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vaf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":950}' 
#
_entry.id    1VAF 
#
_exptl.entry_id    1VAF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              65.409 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ZINC ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1VAF 
_cell.length_a            216.344 
_cell.length_b            216.344 
_cell.length_c            117.835 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VAF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA,PQS dimeric 2 author_and_software_defined_assembly 1 
PISA,PQS dimeric 2 author_and_software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,K 1 1,2 
B,G,H,I,J,L 2 1,3 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+5/6 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 108.172 187.3594 98.195833 
3 'crystal symmetry operation' 9_554 -x,-x+y,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 0 0 -39.278333 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 28 A CYS 104 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
metalc ? metalc2 A SG CYS 28 A CYS 104 10_665 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.474 ? 
metalc ? metalc3 A SG CYS 33 A CYS 109 1_555 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? 
metalc ? metalc4 A SG CYS 33 A CYS 109 10_665 C ZN ZN . A ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.476 ? 
metalc ? metalc5 A SG CYS 118 A CYS 194 1_555 D FE HEM . A HEM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? 
metalc ? metalc6 B SG CYS 28 B CYS 104 1_555 G ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc7 B SG CYS 28 B CYS 104 9_554 G ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc8 B SG CYS 33 B CYS 109 1_555 G ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.538 ? 
metalc ? metalc9 B SG CYS 33 B CYS 109 9_554 G ZN ZN . B ZN 950 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.435 ? 
metalc ? metalc10 B SG CYS 118 B CYS 194 1_555 H FE HEM . B HEM 900 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.649 ? 
#
_chem_comp.formula           'Zn 2' 
_chem_comp.formula_weight    65.409 
_chem_comp.id                ZN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ZINC ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1VAF 
_atom_sites.fract_transf_matrix[1][1]    0.004622 
_atom_sites.fract_transf_matrix[1][2]    0.002669 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.005337 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008486 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 ZN A 1 950 950 ZN ZN2 . 
D 3 HEM A 1 900 900 HEM HEM . 
E 4 H4B A 1 901 901 H4B H4B . 
F 5 ARR A 1 902 902 ARR R17 . 
G 2 ZN B 1 950 950 ZN ZN2 . 
H 3 HEM B 1 900 900 HEM HEM . 
I 4 H4B B 1 1901 901 H4B H4B . 
J 5 ARR B 1 903 902 ARR R17 . 
K 6 HOH A 1 951 2 HOH HOH . 
K 6 HOH A 2 952 4 HOH HOH . 
K 6 HOH A 3 953 5 HOH HOH . 
K 6 HOH A 4 954 6 HOH HOH . 
K 6 HOH A 5 955 7 HOH HOH . 
K 6 HOH A 6 956 10 HOH HOH . 
K 6 HOH A 7 957 17 HOH HOH . 
K 6 HOH A 8 958 18 HOH HOH . 
K 6 HOH A 9 959 20 HOH HOH . 
K 6 HOH A 10 960 21 HOH HOH . 
K 6 HOH A 11 961 22 HOH HOH . 
K 6 HOH A 12 962 23 HOH HOH . 
K 6 HOH A 13 963 24 HOH HOH . 
K 6 HOH A 14 964 25 HOH HOH . 
K 6 HOH A 15 965 26 HOH HOH . 
K 6 HOH A 16 966 27 HOH HOH . 
K 6 HOH A 17 967 28 HOH HOH . 
K 6 HOH A 18 968 29 HOH HOH . 
K 6 HOH A 19 969 30 HOH HOH . 
K 6 HOH A 20 970 31 HOH HOH . 
K 6 HOH A 21 971 34 HOH HOH . 
K 6 HOH A 22 972 35 HOH HOH . 
K 6 HOH A 23 973 39 HOH HOH . 
K 6 HOH A 24 974 40 HOH HOH . 
K 6 HOH A 25 975 43 HOH HOH . 
K 6 HOH A 26 976 45 HOH HOH . 
K 6 HOH A 27 977 46 HOH HOH . 
K 6 HOH A 28 978 49 HOH HOH . 
K 6 HOH A 29 979 50 HOH HOH . 
K 6 HOH A 30 980 51 HOH HOH . 
K 6 HOH A 31 981 52 HOH HOH . 
K 6 HOH A 32 982 53 HOH HOH . 
K 6 HOH A 33 983 56 HOH HOH . 
K 6 HOH A 34 984 59 HOH HOH . 
K 6 HOH A 35 985 62 HOH HOH . 
K 6 HOH A 36 986 64 HOH HOH . 
K 6 HOH A 37 987 66 HOH HOH . 
K 6 HOH A 38 988 67 HOH HOH . 
K 6 HOH A 39 989 69 HOH HOH . 
K 6 HOH A 40 990 70 HOH HOH . 
K 6 HOH A 41 991 72 HOH HOH . 
K 6 HOH A 42 992 73 HOH HOH . 
K 6 HOH A 43 993 76 HOH HOH . 
K 6 HOH A 44 994 77 HOH HOH . 
K 6 HOH A 45 995 81 HOH HOH . 
K 6 HOH A 46 996 84 HOH HOH . 
K 6 HOH A 47 997 86 HOH HOH . 
K 6 HOH A 48 998 89 HOH HOH . 
K 6 HOH A 49 999 90 HOH HOH . 
K 6 HOH A 50 1000 91 HOH HOH . 
K 6 HOH A 51 1001 92 HOH HOH . 
K 6 HOH A 52 1002 94 HOH HOH . 
K 6 HOH A 53 1003 95 HOH HOH . 
K 6 HOH A 54 1004 96 HOH HOH . 
K 6 HOH A 55 1005 98 HOH HOH . 
K 6 HOH A 56 1006 100 HOH HOH . 
K 6 HOH A 57 1007 101 HOH HOH . 
K 6 HOH A 58 1008 107 HOH HOH . 
K 6 HOH A 59 1009 108 HOH HOH . 
K 6 HOH A 60 1010 109 HOH HOH . 
K 6 HOH A 61 1011 111 HOH HOH . 
K 6 HOH A 62 1012 114 HOH HOH . 
K 6 HOH A 63 1013 115 HOH HOH . 
K 6 HOH A 64 1014 121 HOH HOH . 
K 6 HOH A 65 1015 122 HOH HOH . 
K 6 HOH A 66 1016 123 HOH HOH . 
K 6 HOH A 67 1017 127 HOH HOH . 
K 6 HOH A 68 1018 129 HOH HOH . 
K 6 HOH A 69 1019 131 HOH HOH . 
K 6 HOH A 70 1020 132 HOH HOH . 
K 6 HOH A 71 1021 137 HOH HOH . 
K 6 HOH A 72 1022 138 HOH HOH . 
K 6 HOH A 73 1023 139 HOH HOH . 
K 6 HOH A 74 1024 140 HOH HOH . 
K 6 HOH A 75 1025 141 HOH HOH . 
K 6 HOH A 76 1026 142 HOH HOH . 
K 6 HOH A 77 1027 143 HOH HOH . 
K 6 HOH A 78 1028 146 HOH HOH . 
K 6 HOH A 79 1029 147 HOH HOH . 
K 6 HOH A 80 1030 148 HOH HOH . 
K 6 HOH A 81 1031 149 HOH HOH . 
K 6 HOH A 82 1032 150 HOH HOH . 
K 6 HOH A 83 1033 151 HOH HOH . 
K 6 HOH A 84 1034 152 HOH HOH . 
K 6 HOH A 85 1035 153 HOH HOH . 
K 6 HOH A 86 1036 154 HOH HOH . 
K 6 HOH A 87 1037 155 HOH HOH . 
K 6 HOH A 88 1038 156 HOH HOH . 
K 6 HOH A 89 1039 157 HOH HOH . 
L 6 HOH B 1 1902 1 HOH HOH . 
L 6 HOH B 2 1903 3 HOH HOH . 
L 6 HOH B 3 1904 8 HOH HOH . 
L 6 HOH B 4 1905 9 HOH HOH . 
L 6 HOH B 5 1906 11 HOH HOH . 
L 6 HOH B 6 1907 12 HOH HOH . 
L 6 HOH B 7 1908 13 HOH HOH . 
L 6 HOH B 8 1909 14 HOH HOH . 
L 6 HOH B 9 1910 15 HOH HOH . 
L 6 HOH B 10 1911 16 HOH HOH . 
L 6 HOH B 11 1912 19 HOH HOH . 
L 6 HOH B 12 1913 32 HOH HOH . 
L 6 HOH B 13 1914 33 HOH HOH . 
L 6 HOH B 14 1915 36 HOH HOH . 
L 6 HOH B 15 1916 37 HOH HOH . 
L 6 HOH B 16 1917 38 HOH HOH . 
L 6 HOH B 17 1918 41 HOH HOH . 
L 6 HOH B 18 1919 42 HOH HOH . 
L 6 HOH B 19 1920 44 HOH HOH . 
L 6 HOH B 20 1921 47 HOH HOH . 
L 6 HOH B 21 1922 48 HOH HOH . 
L 6 HOH B 22 1923 54 HOH HOH . 
L 6 HOH B 23 1924 55 HOH HOH . 
L 6 HOH B 24 1925 57 HOH HOH . 
L 6 HOH B 25 1926 58 HOH HOH . 
L 6 HOH B 26 1927 60 HOH HOH . 
L 6 HOH B 27 1928 61 HOH HOH . 
L 6 HOH B 28 1929 63 HOH HOH . 
L 6 HOH B 29 1930 65 HOH HOH . 
L 6 HOH B 30 1931 68 HOH HOH . 
L 6 HOH B 31 1932 71 HOH HOH . 
L 6 HOH B 32 1933 74 HOH HOH . 
L 6 HOH B 33 1934 75 HOH HOH . 
L 6 HOH B 34 1935 78 HOH HOH . 
L 6 HOH B 35 1936 79 HOH HOH . 
L 6 HOH B 36 1937 80 HOH HOH . 
L 6 HOH B 37 1938 82 HOH HOH . 
L 6 HOH B 38 1939 83 HOH HOH . 
L 6 HOH B 39 1940 85 HOH HOH . 
L 6 HOH B 40 1941 87 HOH HOH . 
L 6 HOH B 41 1942 88 HOH HOH . 
L 6 HOH B 42 1943 93 HOH HOH . 
L 6 HOH B 43 1944 97 HOH HOH . 
L 6 HOH B 44 1945 99 HOH HOH . 
L 6 HOH B 45 1946 102 HOH HOH . 
L 6 HOH B 46 1947 103 HOH HOH . 
L 6 HOH B 47 1948 104 HOH HOH . 
L 6 HOH B 48 1949 105 HOH HOH . 
L 6 HOH B 49 1950 106 HOH HOH . 
L 6 HOH B 50 1951 110 HOH HOH . 
L 6 HOH B 51 1952 112 HOH HOH . 
L 6 HOH B 52 1953 113 HOH HOH . 
L 6 HOH B 53 1954 116 HOH HOH . 
L 6 HOH B 54 1955 117 HOH HOH . 
L 6 HOH B 55 1956 118 HOH HOH . 
L 6 HOH B 56 1957 119 HOH HOH . 
L 6 HOH B 57 1958 120 HOH HOH . 
L 6 HOH B 58 1959 124 HOH HOH . 
L 6 HOH B 59 1960 125 HOH HOH . 
L 6 HOH B 60 1961 126 HOH HOH . 
L 6 HOH B 61 1962 128 HOH HOH . 
L 6 HOH B 62 1963 130 HOH HOH . 
L 6 HOH B 63 1964 133 HOH HOH . 
L 6 HOH B 64 1965 134 HOH HOH . 
L 6 HOH B 65 1966 135 HOH HOH . 
L 6 HOH B 66 1967 136 HOH HOH . 
L 6 HOH B 67 1968 144 HOH HOH . 
L 6 HOH B 68 1969 145 HOH HOH . 
L 6 HOH B 69 1970 158 HOH HOH . 
L 6 HOH B 70 1971 159 HOH HOH . 
L 6 HOH B 71 1972 160 HOH HOH . 
L 6 HOH B 72 1973 161 HOH HOH . 
L 6 HOH B 73 1974 162 HOH HOH . 
L 6 HOH B 74 1975 163 HOH HOH . 
L 6 HOH B 75 1976 164 HOH HOH . 
L 6 HOH B 76 1977 165 HOH HOH . 
L 6 HOH B 77 1978 166 HOH HOH . 
L 6 HOH B 78 1979 167 HOH HOH . 
L 6 HOH B 79 1980 168 HOH HOH . 
L 6 HOH B 80 1981 169 HOH HOH . 
L 6 HOH B 81 1982 170 HOH HOH . 
L 6 HOH B 82 1983 171 HOH HOH . 
L 6 HOH B 83 1984 172 HOH HOH . 
L 6 HOH B 84 1985 173 HOH HOH . 
L 6 HOH B 85 1986 174 HOH HOH . 
L 6 HOH B 86 1987 175 HOH HOH . 
L 6 HOH B 87 1988 176 HOH HOH . 
L 6 HOH B 88 1989 177 HOH HOH . 
L 6 HOH B 89 1990 178 HOH HOH . 
L 6 HOH B 90 1991 179 HOH HOH . 
L 6 HOH B 91 1992 180 HOH HOH . 
L 6 HOH B 92 1993 181 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           ZN 
_atom_site.label_atom_id         ZN 
_atom_site.label_comp_id         ZN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         C 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               -32.095 
_atom_site.Cartn_y               143.152 
_atom_site.Cartn_z               48.937 
_atom_site.occupancy             0.5 
_atom_site.B_iso_or_equiv        55.23 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          ZN 
_atom_site.auth_comp_id          ZN 
_atom_site.auth_seq_id           950 
_atom_site.auth_asym_id          A 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           1 
#