data_1VAH # _model_server_result.job_id hPx0uz3A_AedJfwhRwLNjg _model_server_result.datetime_utc '2024-10-13 04:20:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":701}' # _entry.id 1VAH # _exptl.entry_id 1VAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 139.109 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description P-NITROPHENOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VAH _cell.length_a 56.3 _cell.length_b 87.8 _cell.length_c 103.4 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 28 A CYS 28 1_555 A SG CYS 86 A CYS 86 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? disulf ? disulf2 A SG CYS 70 A CYS 70 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 A SG CYS 141 A CYS 141 1_555 A SG CYS 160 A CYS 160 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf4 A SG CYS 378 A CYS 378 1_555 A SG CYS 384 A CYS 384 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf5 A SG CYS 450 A CYS 450 1_555 A SG CYS 462 A CYS 462 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc1 A OD1 ASN 100 A ASN 100 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.446 ? metalc ? metalc2 A O ARG 158 A ARG 158 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.292 ? metalc ? metalc3 A OD2 ASP 167 A ASP 167 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc4 A OD1 ASP 167 A ASP 167 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? metalc ? metalc5 A O HIS 201 A HIS 201 1_555 C CA CA . A CA 500 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.455 ? # _chem_comp.formula 'C6 H5 N O3' _chem_comp.formula_weight 139.109 _chem_comp.id NPO _chem_comp.mon_nstd_flag . _chem_comp.name P-NITROPHENOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NPO doub 237 n y C1 C6 NPO sing 238 n y C1 N1 NPO sing 239 n n C2 C3 NPO sing 240 n y C2 H2 NPO sing 241 n n C3 C4 NPO doub 242 n y C3 H3 NPO sing 243 n n C4 C5 NPO sing 244 n y C4 OH NPO sing 245 n n C5 C6 NPO doub 246 n y C5 H5 NPO sing 247 n n C6 H6 NPO sing 248 n n OH HO NPO sing 249 n n N1 O2 NPO sing 250 n n N1 O3 NPO doub 251 n n # _atom_sites.entry_id 1VAH _atom_sites.fract_transf_matrix[1][1] 0.017762 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01139 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009671 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CL A 1 498 498 CL CL . C 3 CA A 1 500 500 CA CA . D 4 NPO A 1 701 701 NPO NPO . E 5 HOH A 1 501 501 HOH HOH . E 5 HOH A 2 502 502 HOH HOH . E 5 HOH A 3 503 503 HOH HOH . E 5 HOH A 4 504 504 HOH HOH . E 5 HOH A 5 505 505 HOH HOH . E 5 HOH A 6 506 506 HOH HOH . E 5 HOH A 7 507 507 HOH HOH . E 5 HOH A 8 508 508 HOH HOH . E 5 HOH A 9 509 509 HOH HOH . E 5 HOH A 10 510 510 HOH HOH . E 5 HOH A 11 511 511 HOH HOH . E 5 HOH A 12 512 512 HOH HOH . E 5 HOH A 13 513 513 HOH HOH . E 5 HOH A 14 514 514 HOH HOH . E 5 HOH A 15 515 515 HOH HOH . E 5 HOH A 16 516 516 HOH HOH . E 5 HOH A 17 517 517 HOH HOH . E 5 HOH A 18 518 518 HOH HOH . E 5 HOH A 19 519 519 HOH HOH . E 5 HOH A 20 520 520 HOH HOH . E 5 HOH A 21 521 521 HOH HOH . E 5 HOH A 22 522 522 HOH HOH . E 5 HOH A 23 523 523 HOH HOH . E 5 HOH A 24 524 524 HOH HOH . E 5 HOH A 25 525 525 HOH HOH . E 5 HOH A 26 526 526 HOH HOH . E 5 HOH A 27 527 527 HOH HOH . E 5 HOH A 28 528 528 HOH HOH . E 5 HOH A 29 529 529 HOH HOH . E 5 HOH A 30 530 530 HOH HOH . E 5 HOH A 31 531 531 HOH HOH . E 5 HOH A 32 532 532 HOH HOH . E 5 HOH A 33 533 533 HOH HOH . E 5 HOH A 34 534 534 HOH HOH . E 5 HOH A 35 535 535 HOH HOH . E 5 HOH A 36 536 536 HOH HOH . E 5 HOH A 37 539 539 HOH HOH . E 5 HOH A 38 540 540 HOH HOH . E 5 HOH A 39 541 541 HOH HOH . E 5 HOH A 40 542 542 HOH HOH . E 5 HOH A 41 543 543 HOH HOH . E 5 HOH A 42 545 545 HOH HOH . E 5 HOH A 43 546 546 HOH HOH . E 5 HOH A 44 547 547 HOH HOH . E 5 HOH A 45 548 548 HOH HOH . E 5 HOH A 46 549 549 HOH HOH . E 5 HOH A 47 550 550 HOH HOH . E 5 HOH A 48 551 551 HOH HOH . E 5 HOH A 49 552 552 HOH HOH . E 5 HOH A 50 553 553 HOH HOH . E 5 HOH A 51 554 554 HOH HOH . E 5 HOH A 52 555 555 HOH HOH . E 5 HOH A 53 556 556 HOH HOH . E 5 HOH A 54 557 557 HOH HOH . E 5 HOH A 55 558 558 HOH HOH . E 5 HOH A 56 559 559 HOH HOH . E 5 HOH A 57 560 560 HOH HOH . E 5 HOH A 58 561 561 HOH HOH . E 5 HOH A 59 562 562 HOH HOH . E 5 HOH A 60 563 563 HOH HOH . E 5 HOH A 61 564 564 HOH HOH . E 5 HOH A 62 565 565 HOH HOH . E 5 HOH A 63 566 566 HOH HOH . E 5 HOH A 64 567 567 HOH HOH . E 5 HOH A 65 568 568 HOH HOH . E 5 HOH A 66 569 569 HOH HOH . E 5 HOH A 67 570 570 HOH HOH . E 5 HOH A 68 571 571 HOH HOH . E 5 HOH A 69 572 572 HOH HOH . E 5 HOH A 70 573 573 HOH HOH . E 5 HOH A 71 574 574 HOH HOH . E 5 HOH A 72 575 575 HOH HOH . E 5 HOH A 73 576 576 HOH HOH . E 5 HOH A 74 577 577 HOH HOH . E 5 HOH A 75 579 579 HOH HOH . E 5 HOH A 76 580 580 HOH HOH . E 5 HOH A 77 581 581 HOH HOH . E 5 HOH A 78 582 582 HOH HOH . E 5 HOH A 79 583 583 HOH HOH . E 5 HOH A 80 585 585 HOH HOH . E 5 HOH A 81 587 587 HOH HOH . E 5 HOH A 82 588 588 HOH HOH . E 5 HOH A 83 589 589 HOH HOH . E 5 HOH A 84 590 590 HOH HOH . E 5 HOH A 85 591 591 HOH HOH . E 5 HOH A 86 592 592 HOH HOH . E 5 HOH A 87 594 594 HOH HOH . E 5 HOH A 88 595 595 HOH HOH . E 5 HOH A 89 596 596 HOH HOH . E 5 HOH A 90 599 599 HOH HOH . E 5 HOH A 91 600 600 HOH HOH . E 5 HOH A 92 602 602 HOH HOH . E 5 HOH A 93 603 603 HOH HOH . E 5 HOH A 94 604 604 HOH HOH . E 5 HOH A 95 606 606 HOH HOH . E 5 HOH A 96 607 607 HOH HOH . E 5 HOH A 97 608 608 HOH HOH . E 5 HOH A 98 609 609 HOH HOH . E 5 HOH A 99 610 610 HOH HOH . E 5 HOH A 100 611 611 HOH HOH . E 5 HOH A 101 612 612 HOH HOH . E 5 HOH A 102 613 613 HOH HOH . E 5 HOH A 103 614 614 HOH HOH . E 5 HOH A 104 615 615 HOH HOH . E 5 HOH A 105 617 617 HOH HOH . E 5 HOH A 106 619 619 HOH HOH . E 5 HOH A 107 620 620 HOH HOH . E 5 HOH A 108 622 622 HOH HOH . E 5 HOH A 109 623 623 HOH HOH . E 5 HOH A 110 625 625 HOH HOH . E 5 HOH A 111 626 626 HOH HOH . E 5 HOH A 112 627 627 HOH HOH . E 5 HOH A 113 628 628 HOH HOH . E 5 HOH A 114 629 629 HOH HOH . E 5 HOH A 115 631 631 HOH HOH . E 5 HOH A 116 632 632 HOH HOH . E 5 HOH A 117 633 633 HOH HOH . E 5 HOH A 118 634 634 HOH HOH . E 5 HOH A 119 635 635 HOH HOH . E 5 HOH A 120 636 636 HOH HOH . E 5 HOH A 121 637 637 HOH HOH . E 5 HOH A 122 638 638 HOH HOH . E 5 HOH A 123 639 639 HOH HOH . E 5 HOH A 124 640 640 HOH HOH . E 5 HOH A 125 641 641 HOH HOH . E 5 HOH A 126 642 642 HOH HOH . E 5 HOH A 127 643 643 HOH HOH . E 5 HOH A 128 644 644 HOH HOH . E 5 HOH A 129 645 645 HOH HOH . E 5 HOH A 130 648 648 HOH HOH . E 5 HOH A 131 649 649 HOH HOH . E 5 HOH A 132 650 650 HOH HOH . E 5 HOH A 133 651 651 HOH HOH . E 5 HOH A 134 652 652 HOH HOH . E 5 HOH A 135 653 653 HOH HOH . E 5 HOH A 136 654 654 HOH HOH . E 5 HOH A 137 655 655 HOH HOH . E 5 HOH A 138 656 656 HOH HOH . E 5 HOH A 139 657 657 HOH HOH . E 5 HOH A 140 658 658 HOH HOH . E 5 HOH A 141 659 659 HOH HOH . E 5 HOH A 142 660 660 HOH HOH . E 5 HOH A 143 661 661 HOH HOH . E 5 HOH A 144 662 662 HOH HOH . E 5 HOH A 145 663 663 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NPO . . . D 4 -3.157 42.907 19.058 0.5 12.87 ? C1 NPO 701 A 1 HETATM 2 C C2 NPO . . . D 4 -4.062 41.943 18.645 0.5 12.05 ? C2 NPO 701 A 1 HETATM 3 C C3 NPO . . . D 4 -5.319 41.876 19.214 0.5 12.19 ? C3 NPO 701 A 1 HETATM 4 C C4 NPO . . . D 4 -5.673 42.781 20.204 0.5 12.92 ? C4 NPO 701 A 1 HETATM 5 C C5 NPO . . . D 4 -4.776 43.754 20.632 0.5 11.58 ? C5 NPO 701 A 1 HETATM 6 C C6 NPO . . . D 4 -3.515 43.813 20.052 0.5 13.46 ? C6 NPO 701 A 1 HETATM 7 O OH NPO . . . D 4 -6.847 42.58 20.889 0.5 12.15 ? OH NPO 701 A 1 HETATM 8 N N1 NPO . . . D 4 -1.944 42.974 18.487 0.5 12.67 ? N1 NPO 701 A 1 HETATM 9 O O2 NPO . . . D 4 -1.278 44.215 18.578 0.5 7.13 ? O2 NPO 701 A 1 HETATM 10 O O3 NPO . . . D 4 -1.681 42.033 17.468 0.5 11.46 ? O3 NPO 701 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 278 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 10 #