data_1VBA # _model_server_result.job_id FamWEUGwrgVWXDNiw5XiHw _model_server_result.datetime_utc '2025-01-09 03:07:52' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vba # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 1VBA # _exptl.entry_id 1VBA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.484 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(METHYLPYRIDAZINE PIPERIDINE PROPYLOXYPHENYL)ETHYLACETATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VBA _cell.length_a 321.06 _cell.length_b 358.62 _cell.length_c 381.82 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBA _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 'complete icosahedral assembly' 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 ? 75-meric 75 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 (1-60) A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G 3 (1-5) A,B,C,D,E,F,G 4 (1,2,6,10,23,24) A,B,C,D,E,F,G 5 P A,B,C,D,E,F,G 6 (X0)(1-5,21-25,41-45) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0 0 0 3 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 0 0 0 4 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 0 0 0 5 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0 0 0 6 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 7 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 0 0 0 8 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0 0 0 9 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0 0 0 10 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 0 0 0 11 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 12 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 0 0 0 13 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0 0 0 14 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0 0 0 15 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 0 0 0 16 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 17 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0 0 0 18 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 0 0 0 19 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 0 0 0 20 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0 0 0 21 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 22 'point symmetry operation' ? ? -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 0 0 0 23 'point symmetry operation' ? ? -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 0 0 0 24 'point symmetry operation' ? ? 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0 0 0 25 'point symmetry operation' ? ? 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0 0 0 26 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 0 0 27 'point symmetry operation' ? ? -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 0 0 0 28 'point symmetry operation' ? ? -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 0 0 0 29 'point symmetry operation' ? ? 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0 0 0 30 'point symmetry operation' ? ? 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0 0 0 31 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 0 0 0 32 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0 0 0 33 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0 0 0 34 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 0 0 0 35 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 0 0 0 36 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 37 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0 0 0 38 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0 0 0 39 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 0 0 0 40 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 0 0 0 41 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 42 'point symmetry operation' ? ? 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0 0 0 43 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0 0 0 44 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 0 0 0 45 'point symmetry operation' ? ? -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 0 0 0 46 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 0 0 0 47 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 0 0 0 48 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 0 0 0 49 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0 0 0 50 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0 0 0 51 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 52 'point symmetry operation' ? ? 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0 0 0 53 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0 0 0 54 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 0 0 0 55 'point symmetry operation' ? ? -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 0 0 0 56 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 0 0 0 57 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 0 0 0 58 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 0 0 0 59 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0 0 0 60 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id C1 _struct_conn.ptnr1_label_comp_id MYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id 4 _struct_conn.ptnr1_auth_comp_id MYR _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id 4 _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.334 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H29 N3 O3' _chem_comp.formula_weight 383.484 _chem_comp.id J78 _chem_comp.mon_nstd_flag . _chem_comp.name '(METHYLPYRIDAZINE PIPERIDINE PROPYLOXYPHENYL)ETHYLACETATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms R78206 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 J78 sing 171 n n C1 H11 J78 sing 172 n n C1 H12 J78 sing 173 n n C1 H13 J78 sing 174 n n C2 C3 J78 sing 175 n y C2 N3 J78 doub 176 n y C3 C4 J78 doub 177 n y C3 H3 J78 sing 178 n n C4 C5 J78 sing 179 n y C4 H4 J78 sing 180 n n C5 N4 J78 doub 181 n y C5 N6 J78 sing 182 n n N4 N3 J78 sing 183 n y N6 C7 J78 sing 184 n n N6 C11 J78 sing 185 n n C7 C8 J78 sing 186 n n C7 H71 J78 sing 187 n n C7 H72 J78 sing 188 n n C8 C9 J78 sing 189 n n C8 H81 J78 sing 190 n n C8 H82 J78 sing 191 n n C9 C10 J78 sing 192 n n C9 C12 J78 sing 193 n n C9 H9 J78 sing 194 n n C10 C11 J78 sing 195 n n C10 H101 J78 sing 196 n n C10 H102 J78 sing 197 n n C11 H111 J78 sing 198 n n C11 H112 J78 sing 199 n n C12 C13 J78 sing 200 n n C12 H121 J78 sing 201 n n C12 H122 J78 sing 202 n n C13 C14 J78 sing 203 n n C13 H131 J78 sing 204 n n C13 H132 J78 sing 205 n n C14 O15 J78 sing 206 n n C14 H141 J78 sing 207 n n C14 H142 J78 sing 208 n n O15 C16 J78 sing 209 n n C16 C17 J78 doub 210 n y C16 C21 J78 sing 211 n y C17 C18 J78 sing 212 n y C17 H17 J78 sing 213 n n C18 C19 J78 doub 214 n y C18 H18 J78 sing 215 n n C19 C20 J78 sing 216 n y C19 C22 J78 sing 217 n n C20 C21 J78 doub 218 n y C20 H20 J78 sing 219 n n C21 H21 J78 sing 220 n n C22 O23 J78 doub 221 n n C22 O24 J78 sing 222 n n O24 C25 J78 sing 223 n n C25 C26 J78 sing 224 n n C25 H251 J78 sing 225 n n C25 H252 J78 sing 226 n n C26 H261 J78 sing 227 n n C26 H262 J78 sing 228 n n C26 H263 J78 sing 229 n n # _atom_sites.entry_id 1VBA _atom_sites.fract_transf_matrix[1][1] 0.003115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 J78 1 1 500 500 J78 J78 . G 7 MYR 4 1 1 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J78 . . . F 6 22.34 66.448 111.713 0.86 17.92 ? C1 J78 500 1 1 HETATM 2 C C2 J78 . . . F 6 23.214 65.229 111.699 0.86 16.98 ? C2 J78 500 1 1 HETATM 3 C C3 J78 . . . F 6 24.139 65.092 110.676 0.86 19.44 ? C3 J78 500 1 1 HETATM 4 C C4 J78 . . . F 6 25 64.001 110.7 0.86 18.31 ? C4 J78 500 1 1 HETATM 5 C C5 J78 . . . F 6 24.899 63.075 111.746 0.86 18.71 ? C5 J78 500 1 1 HETATM 6 N N4 J78 . . . F 6 23.93 63.259 112.672 0.86 19.24 ? N4 J78 500 1 1 HETATM 7 N N3 J78 . . . F 6 23.095 64.313 112.651 0.86 18.31 ? N3 J78 500 1 1 HETATM 8 N N6 J78 . . . F 6 25.742 62.038 111.808 0.86 16.97 ? N6 J78 500 1 1 HETATM 9 C C7 J78 . . . F 6 26.731 61.816 110.741 0.86 17.58 ? C7 J78 500 1 1 HETATM 10 C C8 J78 . . . F 6 27.872 60.897 111.096 0.86 16.71 ? C8 J78 500 1 1 HETATM 11 C C9 J78 . . . F 6 27.584 59.807 112.082 0.86 15.39 ? C9 J78 500 1 1 HETATM 12 C C10 J78 . . . F 6 26.866 60.338 113.279 0.86 14.32 ? C10 J78 500 1 1 HETATM 13 C C11 J78 . . . F 6 25.622 61.148 112.968 0.86 16.63 ? C11 J78 500 1 1 HETATM 14 C C12 J78 . . . F 6 28.896 59.173 112.432 0.86 14.55 ? C12 J78 500 1 1 HETATM 15 C C13 J78 . . . F 6 28.695 57.947 113.245 0.86 18.12 ? C13 J78 500 1 1 HETATM 16 C C14 J78 . . . F 6 28.106 56.835 112.411 0.86 19.29 ? C14 J78 500 1 1 HETATM 17 O O15 J78 . . . F 6 27.477 55.864 113.25 0.86 22.86 ? O15 J78 500 1 1 HETATM 18 C C16 J78 . . . F 6 28.329 55.166 114.029 0.86 22.8 ? C16 J78 500 1 1 HETATM 19 C C17 J78 . . . F 6 28.102 55.202 115.405 0.86 24.13 ? C17 J78 500 1 1 HETATM 20 C C18 J78 . . . F 6 28.9 54.456 116.251 0.86 25.54 ? C18 J78 500 1 1 HETATM 21 C C19 J78 . . . F 6 29.926 53.665 115.735 0.86 26.9 ? C19 J78 500 1 1 HETATM 22 C C20 J78 . . . F 6 30.129 53.629 114.351 0.86 25.05 ? C20 J78 500 1 1 HETATM 23 C C21 J78 . . . F 6 29.335 54.387 113.494 0.86 24.32 ? C21 J78 500 1 1 HETATM 24 C C22 J78 . . . F 6 30.966 53.31 116.592 0.86 30.79 ? C22 J78 500 1 1 HETATM 25 O O23 J78 . . . F 6 31.901 52.62 116.154 0.86 34.52 ? O23 J78 500 1 1 HETATM 26 O O24 J78 . . . F 6 30.902 53.727 117.988 0.86 33.41 ? O24 J78 500 1 1 HETATM 27 C C25 J78 . . . F 6 32.059 53.761 118.758 0.86 35.35 ? C25 J78 500 1 1 HETATM 28 C C26 J78 . . . F 6 33.082 52.608 118.942 0.86 37.52 ? C26 J78 500 1 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 489 _model_server_stats.encode_time_ms 20 _model_server_stats.element_count 28 #