data_1VBB # _model_server_result.job_id ISKtH75BAPnJeCx-VROq7g _model_server_result.datetime_utc '2024-11-09 01:52:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vbb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 1VBB # _exptl.entry_id 1VBB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 397.511 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(METHYLPYRIDAZINE PIPERIDINE BUTYLOXYPHENYL)ETHYLACETATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VBB _cell.length_a 321.06 _cell.length_b 358.62 _cell.length_c 381.82 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBB _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 'complete icosahedral assembly' 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 ? 75-meric 75 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 (1-60) A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G 3 (1-5) A,B,C,D,E,F,G 4 (1,2,6,10,23,24) A,B,C,D,E,F,G 5 P A,B,C,D,E,F,G 6 (X0)(1-5,21-25,41-45) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0 0 0 3 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 0 0 0 4 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 0 0 0 5 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0 0 0 6 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 7 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 0 0 0 8 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0 0 0 9 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0 0 0 10 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 0 0 0 11 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 12 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 0 0 0 13 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0 0 0 14 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0 0 0 15 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 0 0 0 16 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 17 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0 0 0 18 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 0 0 0 19 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 0 0 0 20 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0 0 0 21 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 22 'point symmetry operation' ? ? -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 0 0 0 23 'point symmetry operation' ? ? -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 0 0 0 24 'point symmetry operation' ? ? 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0 0 0 25 'point symmetry operation' ? ? 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0 0 0 26 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 0 0 27 'point symmetry operation' ? ? -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 0 0 0 28 'point symmetry operation' ? ? -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 0 0 0 29 'point symmetry operation' ? ? 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0 0 0 30 'point symmetry operation' ? ? 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0 0 0 31 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 0 0 0 32 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0 0 0 33 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0 0 0 34 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 0 0 0 35 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 0 0 0 36 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 37 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0 0 0 38 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0 0 0 39 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 0 0 0 40 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 0 0 0 41 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 42 'point symmetry operation' ? ? 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0 0 0 43 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0 0 0 44 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 0 0 0 45 'point symmetry operation' ? ? -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 0 0 0 46 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 0 0 0 47 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 0 0 0 48 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 0 0 0 49 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0 0 0 50 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0 0 0 51 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 52 'point symmetry operation' ? ? 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0 0 0 53 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0 0 0 54 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 0 0 0 55 'point symmetry operation' ? ? -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 0 0 0 56 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 0 0 0 57 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 0 0 0 58 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 0 0 0 59 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0 0 0 60 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id C1 _struct_conn.ptnr1_label_comp_id MYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id 4 _struct_conn.ptnr1_auth_comp_id MYR _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id 4 _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.331 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C23 H31 N3 O3' _chem_comp.formula_weight 397.511 _chem_comp.id J80 _chem_comp.mon_nstd_flag . _chem_comp.name '(METHYLPYRIDAZINE PIPERIDINE BUTYLOXYPHENYL)ETHYLACETATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms R80633 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 J80 sing 171 n n C1 H11 J80 sing 172 n n C1 H12 J80 sing 173 n n C1 H13 J80 sing 174 n n C2 C3 J80 sing 175 n y C2 N3 J80 doub 176 n y C3 C4 J80 doub 177 n y C3 H3 J80 sing 178 n n C4 C5 J80 sing 179 n y C4 H4 J80 sing 180 n n C5 N4 J80 doub 181 n y C5 N6 J80 sing 182 n n N4 N3 J80 sing 183 n y N6 C7 J80 sing 184 n n N6 C11 J80 sing 185 n n C7 C8 J80 sing 186 n n C7 H71 J80 sing 187 n n C7 H72 J80 sing 188 n n C8 C9 J80 sing 189 n n C8 H81 J80 sing 190 n n C8 H82 J80 sing 191 n n C9 C10 J80 sing 192 n n C9 C12 J80 sing 193 n n C9 H9 J80 sing 194 n n C10 C11 J80 sing 195 n n C10 H101 J80 sing 196 n n C10 H102 J80 sing 197 n n C11 H111 J80 sing 198 n n C11 H112 J80 sing 199 n n C12 C13 J80 sing 200 n n C12 H121 J80 sing 201 n n C12 H122 J80 sing 202 n n C13 C14 J80 sing 203 n n C13 H131 J80 sing 204 n n C13 H132 J80 sing 205 n n C14 C15 J80 sing 206 n n C14 H141 J80 sing 207 n n C14 H142 J80 sing 208 n n C15 O16 J80 sing 209 n n C15 H151 J80 sing 210 n n C15 H152 J80 sing 211 n n O16 C17 J80 sing 212 n n C17 C18 J80 doub 213 n y C17 C22 J80 sing 214 n y C18 C19 J80 sing 215 n y C18 H18 J80 sing 216 n n C19 C20 J80 doub 217 n y C19 H19 J80 sing 218 n n C20 C21 J80 sing 219 n y C20 C23 J80 sing 220 n n C21 C22 J80 doub 221 n y C21 H21 J80 sing 222 n n C22 H22 J80 sing 223 n n C23 O24 J80 doub 224 n n C23 O25 J80 sing 225 n n O25 C26 J80 sing 226 n n C26 C27 J80 sing 227 n n C26 H261 J80 sing 228 n n C26 H262 J80 sing 229 n n C27 H271 J80 sing 230 n n C27 H272 J80 sing 231 n n C27 H273 J80 sing 232 n n # _atom_sites.entry_id 1VBB _atom_sites.fract_transf_matrix[1][1] 0.003115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 J80 1 1 500 500 J80 J80 . G 7 MYR 4 1 1 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J80 . . . F 6 22.111 66.686 111.751 0.84 2 ? C1 J80 500 1 1 HETATM 2 C C2 J80 . . . F 6 22.91 65.421 111.824 0.84 2 ? C2 J80 500 1 1 HETATM 3 C C3 J80 . . . F 6 23.945 65.333 110.946 0.84 2.94 ? C3 J80 500 1 1 HETATM 4 C C4 J80 . . . F 6 24.771 64.218 111.03 0.84 3.86 ? C4 J80 500 1 1 HETATM 5 C C5 J80 . . . F 6 24.519 63.229 111.978 0.84 2.97 ? C5 J80 500 1 1 HETATM 6 N N4 J80 . . . F 6 23.468 63.4 112.808 0.84 2.5 ? N4 J80 500 1 1 HETATM 7 N N3 J80 . . . F 6 22.665 64.476 112.74 0.84 2 ? N3 J80 500 1 1 HETATM 8 N N6 J80 . . . F 6 25.427 62.248 112.084 0.84 2 ? N6 J80 500 1 1 HETATM 9 C C7 J80 . . . F 6 25.345 61.367 113.248 0.84 2 ? C7 J80 500 1 1 HETATM 10 C C8 J80 . . . F 6 26.356 60.229 113.223 0.84 2.11 ? C8 J80 500 1 1 HETATM 11 C C9 J80 . . . F 6 27.691 60.622 112.666 0.84 2.21 ? C9 J80 500 1 1 HETATM 12 C C10 J80 . . . F 6 27.557 61.059 111.257 0.84 2.68 ? C10 J80 500 1 1 HETATM 13 C C11 J80 . . . F 6 26.462 62.095 111.028 0.84 3.11 ? C11 J80 500 1 1 HETATM 14 C C12 J80 . . . F 6 28.721 59.541 112.873 0.84 3.71 ? C12 J80 500 1 1 HETATM 15 C C13 J80 . . . F 6 28.497 58.348 111.988 0.84 5.35 ? C13 J80 500 1 1 HETATM 16 C C14 J80 . . . F 6 29.19 57.133 112.539 0.84 8.09 ? C14 J80 500 1 1 HETATM 17 C C15 J80 . . . F 6 28.309 56.556 113.613 0.84 11.15 ? C15 J80 500 1 1 HETATM 18 O O16 J80 . . . F 6 28.321 55.13 113.513 0.84 13.63 ? O16 J80 500 1 1 HETATM 19 C C17 J80 . . . F 6 29.091 54.467 114.421 0.84 13.19 ? C17 J80 500 1 1 HETATM 20 C C18 J80 . . . F 6 29.159 54.849 115.752 0.84 13.11 ? C18 J80 500 1 1 HETATM 21 C C19 J80 . . . F 6 30.109 54.259 116.578 0.84 15.02 ? C19 J80 500 1 1 HETATM 22 C C20 J80 . . . F 6 30.991 53.299 116.089 0.84 15.91 ? C20 J80 500 1 1 HETATM 23 C C21 J80 . . . F 6 30.905 52.911 114.756 0.84 15.43 ? C21 J80 500 1 1 HETATM 24 C C22 J80 . . . F 6 29.944 53.506 113.925 0.84 14.25 ? C22 J80 500 1 1 HETATM 25 C C23 J80 . . . F 6 31.989 52.801 116.906 0.84 17.85 ? C23 J80 500 1 1 HETATM 26 O O24 J80 . . . F 6 32.957 52.188 116.436 0.84 17.49 ? O24 J80 500 1 1 HETATM 27 O O25 J80 . . . F 6 31.805 52.994 118.334 0.84 19.74 ? O25 J80 500 1 1 HETATM 28 C C26 J80 . . . F 6 32.915 53.155 119.147 0.84 19.66 ? C26 J80 500 1 1 HETATM 29 C C27 J80 . . . F 6 33.598 54.532 119.398 0.84 19.72 ? C27 J80 500 1 1 # _model_server_stats.io_time_ms 27 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 307 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 29 #