data_1VBE # _model_server_result.job_id HZwBVuOeMITrNQ3Brs4JZg _model_server_result.datetime_utc '2025-03-04 21:26:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vbe # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":500}' # _entry.id 1VBE # _exptl.entry_id 1VBE _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.484 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(METHYLPYRIDAZINE PIPERIDINE PROPYLOXYPHENYL)ETHYLACETATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VBE _cell.length_a 321.06 _cell.length_b 358.62 _cell.length_c 381.82 _cell.Z_PDB 120 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBE _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'I 2 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? 'complete icosahedral assembly' 300 'complete icosahedral assembly' 1 ? pentameric 5 'icosahedral asymmetric unit' 2 ? 25-meric 25 'icosahedral pentamer' 3 ? 30-meric 30 'icosahedral 23 hexamer' 4 ? pentameric 5 'icosahedral asymmetric unit, std point frame' 5 ? 75-meric 75 'crystal asymmetric unit, crystal frame' 6 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G 1 (1-60) A,B,C,D,E,F,G 2 1 A,B,C,D,E,F,G 3 (1-5) A,B,C,D,E,F,G 4 (1,2,6,10,23,24) A,B,C,D,E,F,G 5 P A,B,C,D,E,F,G 6 (X0)(1-5,21-25,41-45) # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] P 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 X0 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0 0 0 3 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 0 0 0 4 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 0 0 0 5 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0 0 0 6 'point symmetry operation' ? ? -1 0 0 0 -1 0 0 0 1 0 0 0 7 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 0 0 0 8 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0 0 0 9 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0 0 0 10 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 0 0 0 11 'point symmetry operation' ? ? -1 0 0 0 1 0 0 0 -1 0 0 0 12 'point symmetry operation' ? ? -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 0 0 0 13 'point symmetry operation' ? ? 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0 0 0 14 'point symmetry operation' ? ? 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0 0 0 15 'point symmetry operation' ? ? -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 0 0 0 16 'point symmetry operation' ? ? 1 0 0 0 -1 0 0 0 -1 0 0 0 17 'point symmetry operation' ? ? 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0 0 0 18 'point symmetry operation' ? ? -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 0 0 0 19 'point symmetry operation' ? ? -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 0 0 0 20 'point symmetry operation' ? ? 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0 0 0 21 'point symmetry operation' ? ? 0 0 1 1 0 0 0 1 0 0 0 0 22 'point symmetry operation' ? ? -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0.809017 0.5 0.309017 0 0 0 23 'point symmetry operation' ? ? -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0.5 -0.309017 0.809017 0 0 0 24 'point symmetry operation' ? ? 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 -0.5 -0.309017 0.809017 0 0 0 25 'point symmetry operation' ? ? 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 -0.809017 0.5 0.309017 0 0 0 26 'point symmetry operation' ? ? 0 0 1 -1 0 0 0 -1 0 0 0 0 27 'point symmetry operation' ? ? -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 -0.809017 -0.5 -0.309017 0 0 0 28 'point symmetry operation' ? ? -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 -0.5 0.309017 -0.809017 0 0 0 29 'point symmetry operation' ? ? 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0.5 0.309017 -0.809017 0 0 0 30 'point symmetry operation' ? ? 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0.809017 -0.5 -0.309017 0 0 0 31 'point symmetry operation' ? ? 0 0 -1 -1 0 0 0 1 0 0 0 0 32 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0.809017 0.5 0.309017 0 0 0 33 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0.5 -0.309017 0.809017 0 0 0 34 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 -0.5 -0.309017 0.809017 0 0 0 35 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 -0.809017 0.5 0.309017 0 0 0 36 'point symmetry operation' ? ? 0 0 -1 1 0 0 0 -1 0 0 0 0 37 'point symmetry operation' ? ? 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 -0.809017 -0.5 -0.309017 0 0 0 38 'point symmetry operation' ? ? 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 -0.5 0.309017 -0.809017 0 0 0 39 'point symmetry operation' ? ? -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0.5 0.309017 -0.809017 0 0 0 40 'point symmetry operation' ? ? -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0.809017 -0.5 -0.309017 0 0 0 41 'point symmetry operation' ? ? 0 1 0 0 0 1 1 0 0 0 0 0 42 'point symmetry operation' ? ? 0.809017 0.5 0.309017 -0.5 0.309017 0.809017 0.309017 -0.809017 0.5 0 0 0 43 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 -0.309017 0.809017 0.5 -0.809017 -0.5 0.309017 0 0 0 44 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 0.309017 0.809017 0.5 -0.809017 0.5 -0.309017 0 0 0 45 'point symmetry operation' ? ? -0.809017 0.5 0.309017 0.5 0.309017 0.809017 0.309017 0.809017 -0.5 0 0 0 46 'point symmetry operation' ? ? 0 -1 0 0 0 1 -1 0 0 0 0 0 47 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 -0.5 0.309017 0.809017 -0.309017 0.809017 -0.5 0 0 0 48 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 -0.309017 0.809017 0.5 0.809017 0.5 -0.309017 0 0 0 49 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 0.309017 0.809017 0.5 0.809017 -0.5 0.309017 0 0 0 50 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 0.5 0.309017 0.809017 -0.309017 -0.809017 0.5 0 0 0 51 'point symmetry operation' ? ? 0 1 0 0 0 -1 -1 0 0 0 0 0 52 'point symmetry operation' ? ? 0.809017 0.5 0.309017 0.5 -0.309017 -0.809017 -0.309017 0.809017 -0.5 0 0 0 53 'point symmetry operation' ? ? 0.5 -0.309017 0.809017 0.309017 -0.809017 -0.5 0.809017 0.5 -0.309017 0 0 0 54 'point symmetry operation' ? ? -0.5 -0.309017 0.809017 -0.309017 -0.809017 -0.5 0.809017 -0.5 0.309017 0 0 0 55 'point symmetry operation' ? ? -0.809017 0.5 0.309017 -0.5 -0.309017 -0.809017 -0.309017 -0.809017 0.5 0 0 0 56 'point symmetry operation' ? ? 0 -1 0 0 0 -1 1 0 0 0 0 0 57 'point symmetry operation' ? ? -0.809017 -0.5 -0.309017 0.5 -0.309017 -0.809017 0.309017 -0.809017 0.5 0 0 0 58 'point symmetry operation' ? ? -0.5 0.309017 -0.809017 0.309017 -0.809017 -0.5 -0.809017 -0.5 0.309017 0 0 0 59 'point symmetry operation' ? ? 0.5 0.309017 -0.809017 -0.309017 -0.809017 -0.5 -0.809017 0.5 -0.309017 0 0 0 60 'point symmetry operation' ? ? 0.809017 -0.5 -0.309017 -0.5 -0.309017 -0.809017 0.309017 0.809017 -0.5 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id G _struct_conn.ptnr1_label_atom_id C1 _struct_conn.ptnr1_label_comp_id MYR _struct_conn.ptnr1_label_seq_id . _struct_conn.ptnr1_auth_asym_id 4 _struct_conn.ptnr1_auth_comp_id MYR _struct_conn.ptnr1_auth_seq_id 1 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id N _struct_conn.ptnr2_label_comp_id GLY _struct_conn.ptnr2_label_seq_id 1 _struct_conn.ptnr2_auth_asym_id 4 _struct_conn.ptnr2_auth_comp_id GLY _struct_conn.ptnr2_auth_seq_id 2 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.327 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C22 H29 N3 O3' _chem_comp.formula_weight 383.484 _chem_comp.id J78 _chem_comp.mon_nstd_flag . _chem_comp.name '(METHYLPYRIDAZINE PIPERIDINE PROPYLOXYPHENYL)ETHYLACETATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms R78206 # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 J78 sing 171 n n C1 H11 J78 sing 172 n n C1 H12 J78 sing 173 n n C1 H13 J78 sing 174 n n C2 C3 J78 sing 175 n y C2 N3 J78 doub 176 n y C3 C4 J78 doub 177 n y C3 H3 J78 sing 178 n n C4 C5 J78 sing 179 n y C4 H4 J78 sing 180 n n C5 N4 J78 doub 181 n y C5 N6 J78 sing 182 n n N4 N3 J78 sing 183 n y N6 C7 J78 sing 184 n n N6 C11 J78 sing 185 n n C7 C8 J78 sing 186 n n C7 H71 J78 sing 187 n n C7 H72 J78 sing 188 n n C8 C9 J78 sing 189 n n C8 H81 J78 sing 190 n n C8 H82 J78 sing 191 n n C9 C10 J78 sing 192 n n C9 C12 J78 sing 193 n n C9 H9 J78 sing 194 n n C10 C11 J78 sing 195 n n C10 H101 J78 sing 196 n n C10 H102 J78 sing 197 n n C11 H111 J78 sing 198 n n C11 H112 J78 sing 199 n n C12 C13 J78 sing 200 n n C12 H121 J78 sing 201 n n C12 H122 J78 sing 202 n n C13 C14 J78 sing 203 n n C13 H131 J78 sing 204 n n C13 H132 J78 sing 205 n n C14 O15 J78 sing 206 n n C14 H141 J78 sing 207 n n C14 H142 J78 sing 208 n n O15 C16 J78 sing 209 n n C16 C17 J78 doub 210 n y C16 C21 J78 sing 211 n y C17 C18 J78 sing 212 n y C17 H17 J78 sing 213 n n C18 C19 J78 doub 214 n y C18 H18 J78 sing 215 n n C19 C20 J78 sing 216 n y C19 C22 J78 sing 217 n n C20 C21 J78 doub 218 n y C20 H20 J78 sing 219 n n C21 H21 J78 sing 220 n n C22 O23 J78 doub 221 n n C22 O24 J78 sing 222 n n O24 C25 J78 sing 223 n n C25 C26 J78 sing 224 n n C25 H251 J78 sing 225 n n C25 H252 J78 sing 226 n n C26 H261 J78 sing 227 n n C26 H262 J78 sing 228 n n C26 H263 J78 sing 229 n n # _atom_sites.entry_id 1VBE _atom_sites.fract_transf_matrix[1][1] 0.003115 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002788 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002619 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 6 J78 1 1 500 500 J78 J78 . G 7 MYR 4 1 1 1 MYR MYR . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 J78 . . . F 6 22.389 66.599 111.664 0.94 19.04 ? C1 J78 500 1 1 HETATM 2 C C2 J78 . . . F 6 23.273 65.375 111.666 0.94 16.17 ? C2 J78 500 1 1 HETATM 3 C C3 J78 . . . F 6 24.062 65.11 110.563 0.94 14.83 ? C3 J78 500 1 1 HETATM 4 C C4 J78 . . . F 6 24.878 64 110.598 0.94 14.1 ? C4 J78 500 1 1 HETATM 5 C C5 J78 . . . F 6 24.891 63.19 111.729 0.94 14.46 ? C5 J78 500 1 1 HETATM 6 N N4 J78 . . . F 6 24.068 63.518 112.742 0.94 19.75 ? N4 J78 500 1 1 HETATM 7 N N3 J78 . . . F 6 23.267 64.595 112.728 0.94 18.97 ? N3 J78 500 1 1 HETATM 8 N N6 J78 . . . F 6 25.715 62.136 111.826 0.94 10.42 ? N6 J78 500 1 1 HETATM 9 C C7 J78 . . . F 6 26.592 61.777 110.711 0.94 11.47 ? C7 J78 500 1 1 HETATM 10 C C8 J78 . . . F 6 27.799 60.991 111.124 0.94 10.72 ? C8 J78 500 1 1 HETATM 11 C C9 J78 . . . F 6 27.537 59.827 112.051 0.94 10.62 ? C9 J78 500 1 1 HETATM 12 C C10 J78 . . . F 6 26.613 60.163 113.199 0.94 11.57 ? C10 J78 500 1 1 HETATM 13 C C11 J78 . . . F 6 25.698 61.389 113.103 0.94 10.86 ? C11 J78 500 1 1 HETATM 14 C C12 J78 . . . F 6 28.892 59.391 112.54 0.94 15.3 ? C12 J78 500 1 1 HETATM 15 C C13 J78 . . . F 6 28.885 58.129 113.349 0.94 18.29 ? C13 J78 500 1 1 HETATM 16 C C14 J78 . . . F 6 28.576 56.961 112.468 0.94 20.58 ? C14 J78 500 1 1 HETATM 17 O O15 J78 . . . F 6 27.646 56.137 113.166 0.94 20.5 ? O15 J78 500 1 1 HETATM 18 C C16 J78 . . . F 6 28.196 55.146 113.926 0.94 19.54 ? C16 J78 500 1 1 HETATM 19 C C17 J78 . . . F 6 29.16 54.295 113.384 0.94 16.82 ? C17 J78 500 1 1 HETATM 20 C C18 J78 . . . F 6 30.003 53.598 114.224 0.94 17.81 ? C18 J78 500 1 1 HETATM 21 C C19 J78 . . . F 6 29.907 53.747 115.602 0.94 19.98 ? C19 J78 500 1 1 HETATM 22 C C20 J78 . . . F 6 28.947 54.59 116.137 0.94 19.5 ? C20 J78 500 1 1 HETATM 23 C C21 J78 . . . F 6 28.093 55.297 115.308 0.94 17.89 ? C21 J78 500 1 1 HETATM 24 C C22 J78 . . . F 6 30.8 53.112 116.44 0.94 23.79 ? C22 J78 500 1 1 HETATM 25 O O23 J78 . . . F 6 31.54 52.214 116.03 0.94 25.73 ? O23 J78 500 1 1 HETATM 26 O O24 J78 . . . F 6 30.835 53.54 117.829 0.94 24.97 ? O24 J78 500 1 1 HETATM 27 C C25 J78 . . . F 6 32.072 53.733 118.437 0.94 23.2 ? C25 J78 500 1 1 HETATM 28 C C26 J78 . . . F 6 33.158 52.659 118.651 0.94 21.63 ? C26 J78 500 1 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 28 #