data_1VBG # _model_server_result.job_id UaCUPSHdkB2K7a9OI1j5Bg _model_server_result.datetime_utc '2025-09-07 12:31:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vbg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":3001}' # _entry.id 1VBG # _exptl.entry_id 1VBG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.53 _cell.angle_gamma 90 _cell.entry_id 1VBG _cell.length_a 108.157 _cell.length_b 100.222 _cell.length_c 108.406 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OE1 GLU 750 A GLU 750 1_555 B MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 A OD2 ASP 774 A ASP 774 1_555 B MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.989 ? metalc ? metalc3 B MG MG . A MG 2000 1_555 F O HOH . A HOH 3003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc4 B MG MG . A MG 2000 1_555 F O HOH . A HOH 3008 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc5 B MG MG . A MG 2000 1_555 F O HOH . A HOH 3017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc6 B MG MG . A MG 2000 1_555 F O HOH . A HOH 3020 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.187 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 1VBG _atom_sites.fract_transf_matrix[1][1] 0.009246 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001058 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009285 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 2000 2000 MG MG . C 3 SO4 A 1 3000 3000 SO4 SO4 . D 3 SO4 A 1 3001 3001 SO4 SO4 . E 3 SO4 A 1 3002 3002 SO4 SO4 . F 4 HOH A 1 3003 1 HOH HOH . F 4 HOH A 2 3004 2 HOH HOH . F 4 HOH A 3 3005 3 HOH HOH . F 4 HOH A 4 3006 4 HOH HOH . F 4 HOH A 5 3007 5 HOH HOH . F 4 HOH A 6 3008 6 HOH HOH . F 4 HOH A 7 3009 7 HOH HOH . F 4 HOH A 8 3010 8 HOH HOH . F 4 HOH A 9 3011 9 HOH HOH . F 4 HOH A 10 3012 10 HOH HOH . F 4 HOH A 11 3013 11 HOH HOH . F 4 HOH A 12 3014 12 HOH HOH . F 4 HOH A 13 3015 13 HOH HOH . F 4 HOH A 14 3016 14 HOH HOH . F 4 HOH A 15 3017 15 HOH HOH . F 4 HOH A 16 3018 16 HOH HOH . F 4 HOH A 17 3019 17 HOH HOH . F 4 HOH A 18 3020 18 HOH HOH . F 4 HOH A 19 3021 19 HOH HOH . F 4 HOH A 20 3022 20 HOH HOH . F 4 HOH A 21 3023 21 HOH HOH . F 4 HOH A 22 3024 22 HOH HOH . F 4 HOH A 23 3025 23 HOH HOH . F 4 HOH A 24 3026 24 HOH HOH . F 4 HOH A 25 3027 25 HOH HOH . F 4 HOH A 26 3028 26 HOH HOH . F 4 HOH A 27 3029 27 HOH HOH . F 4 HOH A 28 3030 28 HOH HOH . F 4 HOH A 29 3031 29 HOH HOH . F 4 HOH A 30 3032 30 HOH HOH . F 4 HOH A 31 3033 31 HOH HOH . F 4 HOH A 32 3034 32 HOH HOH . F 4 HOH A 33 3035 33 HOH HOH . F 4 HOH A 34 3036 34 HOH HOH . F 4 HOH A 35 3037 35 HOH HOH . F 4 HOH A 36 3038 36 HOH HOH . F 4 HOH A 37 3039 37 HOH HOH . F 4 HOH A 38 3040 38 HOH HOH . F 4 HOH A 39 3041 39 HOH HOH . F 4 HOH A 40 3042 40 HOH HOH . F 4 HOH A 41 3043 41 HOH HOH . F 4 HOH A 42 3044 42 HOH HOH . F 4 HOH A 43 3045 43 HOH HOH . F 4 HOH A 44 3046 44 HOH HOH . F 4 HOH A 45 3047 45 HOH HOH . F 4 HOH A 46 3048 46 HOH HOH . F 4 HOH A 47 3049 47 HOH HOH . F 4 HOH A 48 3050 48 HOH HOH . F 4 HOH A 49 3051 49 HOH HOH . F 4 HOH A 50 3052 50 HOH HOH . F 4 HOH A 51 3053 51 HOH HOH . F 4 HOH A 52 3054 52 HOH HOH . F 4 HOH A 53 3055 53 HOH HOH . F 4 HOH A 54 3056 54 HOH HOH . F 4 HOH A 55 3057 55 HOH HOH . F 4 HOH A 56 3058 56 HOH HOH . F 4 HOH A 57 3059 57 HOH HOH . F 4 HOH A 58 3060 58 HOH HOH . F 4 HOH A 59 3061 59 HOH HOH . F 4 HOH A 60 3062 60 HOH HOH . F 4 HOH A 61 3063 61 HOH HOH . F 4 HOH A 62 3064 62 HOH HOH . F 4 HOH A 63 3065 63 HOH HOH . F 4 HOH A 64 3066 64 HOH HOH . F 4 HOH A 65 3067 65 HOH HOH . F 4 HOH A 66 3068 66 HOH HOH . F 4 HOH A 67 3069 67 HOH HOH . F 4 HOH A 68 3070 68 HOH HOH . F 4 HOH A 69 3071 69 HOH HOH . F 4 HOH A 70 3072 70 HOH HOH . F 4 HOH A 71 3073 71 HOH HOH . F 4 HOH A 72 3074 72 HOH HOH . F 4 HOH A 73 3075 73 HOH HOH . F 4 HOH A 74 3076 74 HOH HOH . F 4 HOH A 75 3077 75 HOH HOH . F 4 HOH A 76 3078 76 HOH HOH . F 4 HOH A 77 3079 77 HOH HOH . F 4 HOH A 78 3080 78 HOH HOH . F 4 HOH A 79 3081 79 HOH HOH . F 4 HOH A 80 3082 80 HOH HOH . F 4 HOH A 81 3083 81 HOH HOH . F 4 HOH A 82 3084 82 HOH HOH . F 4 HOH A 83 3085 83 HOH HOH . F 4 HOH A 84 3086 84 HOH HOH . F 4 HOH A 85 3087 85 HOH HOH . F 4 HOH A 86 3088 86 HOH HOH . F 4 HOH A 87 3089 87 HOH HOH . F 4 HOH A 88 3090 88 HOH HOH . F 4 HOH A 89 3091 89 HOH HOH . F 4 HOH A 90 3092 90 HOH HOH . F 4 HOH A 91 3093 91 HOH HOH . F 4 HOH A 92 3094 92 HOH HOH . F 4 HOH A 93 3095 93 HOH HOH . F 4 HOH A 94 3096 94 HOH HOH . F 4 HOH A 95 3097 95 HOH HOH . F 4 HOH A 96 3098 96 HOH HOH . F 4 HOH A 97 3099 97 HOH HOH . F 4 HOH A 98 3100 98 HOH HOH . F 4 HOH A 99 3101 99 HOH HOH . F 4 HOH A 100 3102 100 HOH HOH . F 4 HOH A 101 3103 101 HOH HOH . F 4 HOH A 102 3104 102 HOH HOH . F 4 HOH A 103 3105 103 HOH HOH . F 4 HOH A 104 3106 104 HOH HOH . F 4 HOH A 105 3107 105 HOH HOH . F 4 HOH A 106 3108 106 HOH HOH . F 4 HOH A 107 3109 107 HOH HOH . F 4 HOH A 108 3110 108 HOH HOH . F 4 HOH A 109 3111 109 HOH HOH . F 4 HOH A 110 3112 110 HOH HOH . F 4 HOH A 111 3113 111 HOH HOH . F 4 HOH A 112 3114 112 HOH HOH . F 4 HOH A 113 3115 113 HOH HOH . F 4 HOH A 114 3116 114 HOH HOH . F 4 HOH A 115 3117 115 HOH HOH . F 4 HOH A 116 3118 116 HOH HOH . F 4 HOH A 117 3119 117 HOH HOH . F 4 HOH A 118 3120 118 HOH HOH . F 4 HOH A 119 3121 119 HOH HOH . F 4 HOH A 120 3122 120 HOH HOH . F 4 HOH A 121 3123 121 HOH HOH . F 4 HOH A 122 3124 122 HOH HOH . F 4 HOH A 123 3125 123 HOH HOH . F 4 HOH A 124 3126 124 HOH HOH . F 4 HOH A 125 3127 125 HOH HOH . F 4 HOH A 126 3128 126 HOH HOH . F 4 HOH A 127 3129 127 HOH HOH . F 4 HOH A 128 3130 128 HOH HOH . F 4 HOH A 129 3131 129 HOH HOH . F 4 HOH A 130 3132 130 HOH HOH . F 4 HOH A 131 3133 131 HOH HOH . F 4 HOH A 132 3134 132 HOH HOH . F 4 HOH A 133 3135 133 HOH HOH . F 4 HOH A 134 3136 134 HOH HOH . F 4 HOH A 135 3137 135 HOH HOH . F 4 HOH A 136 3138 136 HOH HOH . F 4 HOH A 137 3139 137 HOH HOH . F 4 HOH A 138 3140 138 HOH HOH . F 4 HOH A 139 3141 139 HOH HOH . F 4 HOH A 140 3142 140 HOH HOH . F 4 HOH A 141 3143 141 HOH HOH . F 4 HOH A 142 3144 142 HOH HOH . F 4 HOH A 143 3145 143 HOH HOH . F 4 HOH A 144 3146 144 HOH HOH . F 4 HOH A 145 3147 145 HOH HOH . F 4 HOH A 146 3148 146 HOH HOH . F 4 HOH A 147 3149 147 HOH HOH . F 4 HOH A 148 3150 148 HOH HOH . F 4 HOH A 149 3151 149 HOH HOH . F 4 HOH A 150 3152 150 HOH HOH . F 4 HOH A 151 3153 151 HOH HOH . F 4 HOH A 152 3154 152 HOH HOH . F 4 HOH A 153 3155 153 HOH HOH . F 4 HOH A 154 3156 154 HOH HOH . F 4 HOH A 155 3157 155 HOH HOH . F 4 HOH A 156 3158 156 HOH HOH . F 4 HOH A 157 3159 157 HOH HOH . F 4 HOH A 158 3160 158 HOH HOH . F 4 HOH A 159 3161 159 HOH HOH . F 4 HOH A 160 3162 160 HOH HOH . F 4 HOH A 161 3163 161 HOH HOH . F 4 HOH A 162 3164 162 HOH HOH . F 4 HOH A 163 3165 163 HOH HOH . F 4 HOH A 164 3166 164 HOH HOH . F 4 HOH A 165 3167 165 HOH HOH . F 4 HOH A 166 3168 166 HOH HOH . F 4 HOH A 167 3169 167 HOH HOH . F 4 HOH A 168 3170 168 HOH HOH . F 4 HOH A 169 3171 169 HOH HOH . F 4 HOH A 170 3172 170 HOH HOH . F 4 HOH A 171 3173 171 HOH HOH . F 4 HOH A 172 3174 172 HOH HOH . F 4 HOH A 173 3175 173 HOH HOH . F 4 HOH A 174 3176 174 HOH HOH . F 4 HOH A 175 3177 175 HOH HOH . F 4 HOH A 176 3178 176 HOH HOH . F 4 HOH A 177 3179 177 HOH HOH . F 4 HOH A 178 3180 178 HOH HOH . F 4 HOH A 179 3181 179 HOH HOH . F 4 HOH A 180 3182 180 HOH HOH . F 4 HOH A 181 3183 181 HOH HOH . F 4 HOH A 182 3184 182 HOH HOH . F 4 HOH A 183 3185 183 HOH HOH . F 4 HOH A 184 3186 184 HOH HOH . F 4 HOH A 185 3187 185 HOH HOH . F 4 HOH A 186 3188 186 HOH HOH . F 4 HOH A 187 3189 187 HOH HOH . F 4 HOH A 188 3190 188 HOH HOH . F 4 HOH A 189 3191 189 HOH HOH . F 4 HOH A 190 3192 190 HOH HOH . F 4 HOH A 191 3193 191 HOH HOH . F 4 HOH A 192 3194 192 HOH HOH . F 4 HOH A 193 3195 193 HOH HOH . F 4 HOH A 194 3196 194 HOH HOH . F 4 HOH A 195 3197 195 HOH HOH . F 4 HOH A 196 3198 196 HOH HOH . F 4 HOH A 197 3199 197 HOH HOH . F 4 HOH A 198 3200 198 HOH HOH . F 4 HOH A 199 3201 199 HOH HOH . F 4 HOH A 200 3202 200 HOH HOH . F 4 HOH A 201 3203 201 HOH HOH . F 4 HOH A 202 3204 202 HOH HOH . F 4 HOH A 203 3205 203 HOH HOH . F 4 HOH A 204 3206 204 HOH HOH . F 4 HOH A 205 3207 205 HOH HOH . F 4 HOH A 206 3208 206 HOH HOH . F 4 HOH A 207 3209 207 HOH HOH . F 4 HOH A 208 3210 208 HOH HOH . F 4 HOH A 209 3211 209 HOH HOH . F 4 HOH A 210 3212 210 HOH HOH . F 4 HOH A 211 3213 211 HOH HOH . F 4 HOH A 212 3214 212 HOH HOH . F 4 HOH A 213 3215 213 HOH HOH . F 4 HOH A 214 3216 214 HOH HOH . F 4 HOH A 215 3217 215 HOH HOH . F 4 HOH A 216 3218 216 HOH HOH . F 4 HOH A 217 3219 217 HOH HOH . F 4 HOH A 218 3220 218 HOH HOH . F 4 HOH A 219 3221 219 HOH HOH . F 4 HOH A 220 3222 220 HOH HOH . F 4 HOH A 221 3223 221 HOH HOH . F 4 HOH A 222 3224 222 HOH HOH . F 4 HOH A 223 3225 223 HOH HOH . F 4 HOH A 224 3226 224 HOH HOH . F 4 HOH A 225 3227 225 HOH HOH . F 4 HOH A 226 3228 226 HOH HOH . F 4 HOH A 227 3229 227 HOH HOH . F 4 HOH A 228 3230 228 HOH HOH . F 4 HOH A 229 3231 229 HOH HOH . F 4 HOH A 230 3232 230 HOH HOH . F 4 HOH A 231 3233 231 HOH HOH . F 4 HOH A 232 3234 232 HOH HOH . F 4 HOH A 233 3235 233 HOH HOH . F 4 HOH A 234 3236 234 HOH HOH . F 4 HOH A 235 3237 235 HOH HOH . F 4 HOH A 236 3238 236 HOH HOH . F 4 HOH A 237 3239 237 HOH HOH . F 4 HOH A 238 3240 238 HOH HOH . F 4 HOH A 239 3241 239 HOH HOH . F 4 HOH A 240 3242 240 HOH HOH . F 4 HOH A 241 3243 241 HOH HOH . F 4 HOH A 242 3244 242 HOH HOH . F 4 HOH A 243 3245 243 HOH HOH . F 4 HOH A 244 3246 244 HOH HOH . F 4 HOH A 245 3247 245 HOH HOH . F 4 HOH A 246 3248 246 HOH HOH . F 4 HOH A 247 3249 247 HOH HOH . F 4 HOH A 248 3250 248 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . D 3 19.655 47.298 5.464 1 37.64 ? S SO4 3001 A 1 HETATM 2 O O1 SO4 . . . D 3 20.61 47.563 4.376 1 31.54 ? O1 SO4 3001 A 1 HETATM 3 O O2 SO4 . . . D 3 18.275 47.547 4.993 1 39.7 ? O2 SO4 3001 A 1 HETATM 4 O O3 SO4 . . . D 3 19.756 45.889 5.916 1 37.4 ? O3 SO4 3001 A 1 HETATM 5 O O4 SO4 . . . D 3 19.95 48.203 6.597 1 47.08 ? O4 SO4 3001 A 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 331 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #