data_1VBH
#
_model_server_result.job_id            IFM_LtMLdJsK5DtnB4t_XQ 
_model_server_result.datetime_utc      '2025-09-08 23:09:21' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vbh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":3001}' 
#
_entry.id    1VBH 
#
_exptl.entry_id    1VBH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              96.063 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'SULFATE ION' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          98.48 
_cell.angle_gamma         90 
_cell.entry_id            1VBH 
_cell.length_a            109.339 
_cell.length_b            100.51 
_cell.length_c            108.155 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VBH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA,PQS 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 750 A GLU 750 1_555 B MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? 
metalc ? metalc2 A OD2 ASP 774 A ASP 774 1_555 B MG MG . A MG 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? 
metalc ? metalc3 B MG MG . A MG 2000 1_555 D O2' PEP . A PEP 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? 
metalc ? metalc4 B MG MG . A MG 2000 1_555 D O2 PEP . A PEP 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.766 ? 
metalc ? metalc5 B MG MG . A MG 2000 1_555 D O3P PEP . A PEP 3000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.48 ? 
metalc ? metalc6 B MG MG . A MG 2000 1_555 E O HOH . A HOH 3018 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
#
_chem_comp.formula           'O4 S -2' 
_chem_comp.formula_weight    96.063 
_chem_comp.id                SO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'SULFATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O1 SO4 doub 304 n n 
S O2 SO4 doub 305 n n 
S O3 SO4 sing 306 n n 
S O4 SO4 sing 307 n n 
#
_atom_sites.entry_id                     1VBH 
_atom_sites.fract_transf_matrix[1][1]    0.009146 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001364 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009949 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009348 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG A 1 2000 2000 MG MG . 
C 3 SO4 A 1 3001 3001 SO4 SO4 . 
D 4 PEP A 1 3000 3000 PEP PEP . 
E 5 HOH A 1 3002 1 HOH HOH . 
E 5 HOH A 2 3003 2 HOH HOH . 
E 5 HOH A 3 3004 3 HOH HOH . 
E 5 HOH A 4 3005 4 HOH HOH . 
E 5 HOH A 5 3006 5 HOH HOH . 
E 5 HOH A 6 3007 6 HOH HOH . 
E 5 HOH A 7 3008 7 HOH HOH . 
E 5 HOH A 8 3009 8 HOH HOH . 
E 5 HOH A 9 3010 9 HOH HOH . 
E 5 HOH A 10 3011 10 HOH HOH . 
E 5 HOH A 11 3012 11 HOH HOH . 
E 5 HOH A 12 3013 12 HOH HOH . 
E 5 HOH A 13 3014 13 HOH HOH . 
E 5 HOH A 14 3015 14 HOH HOH . 
E 5 HOH A 15 3016 15 HOH HOH . 
E 5 HOH A 16 3017 16 HOH HOH . 
E 5 HOH A 17 3018 17 HOH HOH . 
E 5 HOH A 18 3019 18 HOH HOH . 
E 5 HOH A 19 3020 19 HOH HOH . 
E 5 HOH A 20 3021 20 HOH HOH . 
E 5 HOH A 21 3022 21 HOH HOH . 
E 5 HOH A 22 3023 22 HOH HOH . 
E 5 HOH A 23 3024 23 HOH HOH . 
E 5 HOH A 24 3025 24 HOH HOH . 
E 5 HOH A 25 3026 25 HOH HOH . 
E 5 HOH A 26 3027 26 HOH HOH . 
E 5 HOH A 27 3028 27 HOH HOH . 
E 5 HOH A 28 3029 28 HOH HOH . 
E 5 HOH A 29 3030 29 HOH HOH . 
E 5 HOH A 30 3031 30 HOH HOH . 
E 5 HOH A 31 3032 31 HOH HOH . 
E 5 HOH A 32 3033 32 HOH HOH . 
E 5 HOH A 33 3034 33 HOH HOH . 
E 5 HOH A 34 3035 34 HOH HOH . 
E 5 HOH A 35 3036 35 HOH HOH . 
E 5 HOH A 36 3037 36 HOH HOH . 
E 5 HOH A 37 3038 37 HOH HOH . 
E 5 HOH A 38 3039 38 HOH HOH . 
E 5 HOH A 39 3040 39 HOH HOH . 
E 5 HOH A 40 3041 40 HOH HOH . 
E 5 HOH A 41 3042 41 HOH HOH . 
E 5 HOH A 42 3043 42 HOH HOH . 
E 5 HOH A 43 3044 43 HOH HOH . 
E 5 HOH A 44 3045 44 HOH HOH . 
E 5 HOH A 45 3046 45 HOH HOH . 
E 5 HOH A 46 3047 46 HOH HOH . 
E 5 HOH A 47 3048 47 HOH HOH . 
E 5 HOH A 48 3049 48 HOH HOH . 
E 5 HOH A 49 3050 49 HOH HOH . 
E 5 HOH A 50 3051 50 HOH HOH . 
E 5 HOH A 51 3052 51 HOH HOH . 
E 5 HOH A 52 3053 52 HOH HOH . 
E 5 HOH A 53 3054 53 HOH HOH . 
E 5 HOH A 54 3055 54 HOH HOH . 
E 5 HOH A 55 3056 55 HOH HOH . 
E 5 HOH A 56 3057 56 HOH HOH . 
E 5 HOH A 57 3058 57 HOH HOH . 
E 5 HOH A 58 3059 58 HOH HOH . 
E 5 HOH A 59 3060 59 HOH HOH . 
E 5 HOH A 60 3061 60 HOH HOH . 
E 5 HOH A 61 3062 61 HOH HOH . 
E 5 HOH A 62 3063 62 HOH HOH . 
E 5 HOH A 63 3064 63 HOH HOH . 
E 5 HOH A 64 3065 64 HOH HOH . 
E 5 HOH A 65 3066 65 HOH HOH . 
E 5 HOH A 66 3067 66 HOH HOH . 
E 5 HOH A 67 3068 67 HOH HOH . 
E 5 HOH A 68 3069 68 HOH HOH . 
E 5 HOH A 69 3070 69 HOH HOH . 
E 5 HOH A 70 3071 70 HOH HOH . 
E 5 HOH A 71 3072 71 HOH HOH . 
E 5 HOH A 72 3073 72 HOH HOH . 
E 5 HOH A 73 3074 73 HOH HOH . 
E 5 HOH A 74 3075 74 HOH HOH . 
E 5 HOH A 75 3076 75 HOH HOH . 
E 5 HOH A 76 3077 76 HOH HOH . 
E 5 HOH A 77 3078 77 HOH HOH . 
E 5 HOH A 78 3079 78 HOH HOH . 
E 5 HOH A 79 3080 79 HOH HOH . 
E 5 HOH A 80 3081 80 HOH HOH . 
E 5 HOH A 81 3082 81 HOH HOH . 
E 5 HOH A 82 3083 82 HOH HOH . 
E 5 HOH A 83 3084 83 HOH HOH . 
E 5 HOH A 84 3085 84 HOH HOH . 
E 5 HOH A 85 3086 85 HOH HOH . 
E 5 HOH A 86 3087 86 HOH HOH . 
E 5 HOH A 87 3088 87 HOH HOH . 
E 5 HOH A 88 3089 88 HOH HOH . 
E 5 HOH A 89 3090 89 HOH HOH . 
E 5 HOH A 90 3091 90 HOH HOH . 
E 5 HOH A 91 3092 91 HOH HOH . 
E 5 HOH A 92 3093 92 HOH HOH . 
E 5 HOH A 93 3094 93 HOH HOH . 
E 5 HOH A 94 3095 94 HOH HOH . 
E 5 HOH A 95 3096 95 HOH HOH . 
E 5 HOH A 96 3097 96 HOH HOH . 
E 5 HOH A 97 3098 97 HOH HOH . 
E 5 HOH A 98 3099 98 HOH HOH . 
E 5 HOH A 99 3100 99 HOH HOH . 
E 5 HOH A 100 3101 100 HOH HOH . 
E 5 HOH A 101 3102 101 HOH HOH . 
E 5 HOH A 102 3103 102 HOH HOH . 
E 5 HOH A 103 3104 103 HOH HOH . 
E 5 HOH A 104 3105 104 HOH HOH . 
E 5 HOH A 105 3106 105 HOH HOH . 
E 5 HOH A 106 3107 106 HOH HOH . 
E 5 HOH A 107 3108 107 HOH HOH . 
E 5 HOH A 108 3109 108 HOH HOH . 
E 5 HOH A 109 3110 109 HOH HOH . 
E 5 HOH A 110 3111 110 HOH HOH . 
E 5 HOH A 111 3112 111 HOH HOH . 
E 5 HOH A 112 3113 112 HOH HOH . 
E 5 HOH A 113 3114 113 HOH HOH . 
E 5 HOH A 114 3115 114 HOH HOH . 
E 5 HOH A 115 3116 115 HOH HOH . 
E 5 HOH A 116 3117 116 HOH HOH . 
E 5 HOH A 117 3118 117 HOH HOH . 
E 5 HOH A 118 3119 118 HOH HOH . 
E 5 HOH A 119 3120 119 HOH HOH . 
E 5 HOH A 120 3121 120 HOH HOH . 
E 5 HOH A 121 3122 121 HOH HOH . 
E 5 HOH A 122 3123 122 HOH HOH . 
E 5 HOH A 123 3124 123 HOH HOH . 
E 5 HOH A 124 3125 124 HOH HOH . 
E 5 HOH A 125 3126 125 HOH HOH . 
E 5 HOH A 126 3127 126 HOH HOH . 
E 5 HOH A 127 3128 127 HOH HOH . 
E 5 HOH A 128 3129 128 HOH HOH . 
E 5 HOH A 129 3130 129 HOH HOH . 
E 5 HOH A 130 3131 130 HOH HOH . 
E 5 HOH A 131 3132 131 HOH HOH . 
E 5 HOH A 132 3133 132 HOH HOH . 
E 5 HOH A 133 3134 133 HOH HOH . 
E 5 HOH A 134 3135 134 HOH HOH . 
E 5 HOH A 135 3136 135 HOH HOH . 
E 5 HOH A 136 3137 136 HOH HOH . 
E 5 HOH A 137 3138 137 HOH HOH . 
E 5 HOH A 138 3139 138 HOH HOH . 
E 5 HOH A 139 3140 139 HOH HOH . 
E 5 HOH A 140 3141 140 HOH HOH . 
E 5 HOH A 141 3142 141 HOH HOH . 
E 5 HOH A 142 3143 142 HOH HOH . 
E 5 HOH A 143 3144 143 HOH HOH . 
E 5 HOH A 144 3145 144 HOH HOH . 
E 5 HOH A 145 3146 145 HOH HOH . 
E 5 HOH A 146 3147 146 HOH HOH . 
E 5 HOH A 147 3148 147 HOH HOH . 
E 5 HOH A 148 3149 148 HOH HOH . 
E 5 HOH A 149 3150 149 HOH HOH . 
E 5 HOH A 150 3151 150 HOH HOH . 
E 5 HOH A 151 3152 151 HOH HOH . 
E 5 HOH A 152 3153 152 HOH HOH . 
E 5 HOH A 153 3154 153 HOH HOH . 
E 5 HOH A 154 3155 154 HOH HOH . 
E 5 HOH A 155 3156 155 HOH HOH . 
E 5 HOH A 156 3157 156 HOH HOH . 
E 5 HOH A 157 3158 157 HOH HOH . 
E 5 HOH A 158 3159 158 HOH HOH . 
E 5 HOH A 159 3160 159 HOH HOH . 
E 5 HOH A 160 3161 160 HOH HOH . 
E 5 HOH A 161 3162 161 HOH HOH . 
E 5 HOH A 162 3163 162 HOH HOH . 
E 5 HOH A 163 3164 163 HOH HOH . 
E 5 HOH A 164 3165 164 HOH HOH . 
E 5 HOH A 165 3166 165 HOH HOH . 
E 5 HOH A 166 3167 166 HOH HOH . 
E 5 HOH A 167 3168 167 HOH HOH . 
E 5 HOH A 168 3169 168 HOH HOH . 
E 5 HOH A 169 3170 169 HOH HOH . 
E 5 HOH A 170 3171 170 HOH HOH . 
E 5 HOH A 171 3172 171 HOH HOH . 
E 5 HOH A 172 3173 172 HOH HOH . 
E 5 HOH A 173 3174 173 HOH HOH . 
E 5 HOH A 174 3175 174 HOH HOH . 
E 5 HOH A 175 3176 175 HOH HOH . 
E 5 HOH A 176 3177 176 HOH HOH . 
E 5 HOH A 177 3178 177 HOH HOH . 
E 5 HOH A 178 3179 178 HOH HOH . 
E 5 HOH A 179 3180 179 HOH HOH . 
E 5 HOH A 180 3181 180 HOH HOH . 
E 5 HOH A 181 3182 181 HOH HOH . 
E 5 HOH A 182 3183 182 HOH HOH . 
E 5 HOH A 183 3184 183 HOH HOH . 
E 5 HOH A 184 3185 184 HOH HOH . 
E 5 HOH A 185 3186 185 HOH HOH . 
E 5 HOH A 186 3187 186 HOH HOH . 
E 5 HOH A 187 3188 187 HOH HOH . 
E 5 HOH A 188 3189 188 HOH HOH . 
E 5 HOH A 189 3190 189 HOH HOH . 
E 5 HOH A 190 3191 190 HOH HOH . 
E 5 HOH A 191 3192 191 HOH HOH . 
E 5 HOH A 192 3193 192 HOH HOH . 
E 5 HOH A 193 3194 193 HOH HOH . 
E 5 HOH A 194 3195 194 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S SO4 . . . C 3 43.577 42.681 24.131 1 80.99 ? S SO4 3001 A 1 
HETATM 2 O O1 SO4 . . . C 3 44.804 43.378 23.7 1 81.38 ? O1 SO4 3001 A 1 
HETATM 3 O O2 SO4 . . . C 3 42.686 43.628 24.827 1 80.93 ? O2 SO4 3001 A 1 
HETATM 4 O O3 SO4 . . . C 3 42.894 42.123 22.946 1 81.49 ? O3 SO4 3001 A 1 
HETATM 5 O O4 SO4 . . . C 3 43.929 41.583 25.053 1 81.08 ? O4 SO4 3001 A 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           356 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           5 
#