data_1VBM # _model_server_result.job_id 2lZiYyHq0r1WNsAohSJSaw _model_server_result.datetime_utc '2024-11-25 08:44:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vbm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":2002}' # _entry.id 1VBM # _exptl.entry_id 1VBM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VBM _cell.length_a 83.189 _cell.length_b 83.189 _cell.length_c 182.424 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VBM _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 F N N ? 2 G N N # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 290 n n S O2 SO4 doub 291 n n S O3 SO4 sing 292 n n S O4 SO4 sing 293 n n # _atom_sites.entry_id 1VBM _atom_sites.fract_transf_matrix[1][1] 0.012021 _atom_sites.fract_transf_matrix[1][2] 0.00694 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01388 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005482 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 2003 2003 SO4 SUL . D 2 SO4 A 1 2004 2004 SO4 SUL . E 3 YSA A 1 3001 3001 YSA YSA . F 2 SO4 B 1 2001 2001 SO4 SUL . G 2 SO4 B 1 2002 2002 SO4 SUL . H 3 YSA B 1 3002 3002 YSA YSA . I 4 HOH A 1 3002 1 HOH TIP . I 4 HOH A 2 3003 3 HOH TIP . I 4 HOH A 3 3004 4 HOH TIP . I 4 HOH A 4 3005 5 HOH TIP . I 4 HOH A 5 3006 7 HOH TIP . I 4 HOH A 6 3007 8 HOH TIP . I 4 HOH A 7 3008 10 HOH TIP . I 4 HOH A 8 3009 11 HOH TIP . I 4 HOH A 9 3010 14 HOH TIP . I 4 HOH A 10 3011 15 HOH TIP . I 4 HOH A 11 3012 16 HOH TIP . I 4 HOH A 12 3013 27 HOH TIP . I 4 HOH A 13 3014 31 HOH TIP . I 4 HOH A 14 3015 32 HOH TIP . I 4 HOH A 15 3016 33 HOH TIP . I 4 HOH A 16 3017 34 HOH TIP . I 4 HOH A 17 3018 35 HOH TIP . I 4 HOH A 18 3019 36 HOH TIP . I 4 HOH A 19 3020 37 HOH TIP . I 4 HOH A 20 3021 38 HOH TIP . I 4 HOH A 21 3022 39 HOH TIP . I 4 HOH A 22 3023 42 HOH TIP . I 4 HOH A 23 3024 50 HOH TIP . I 4 HOH A 24 3025 51 HOH TIP . I 4 HOH A 25 3026 54 HOH TIP . I 4 HOH A 26 3027 55 HOH TIP . I 4 HOH A 27 3028 58 HOH TIP . I 4 HOH A 28 3029 60 HOH TIP . I 4 HOH A 29 3030 61 HOH TIP . I 4 HOH A 30 3031 65 HOH TIP . I 4 HOH A 31 3032 67 HOH TIP . I 4 HOH A 32 3033 72 HOH TIP . I 4 HOH A 33 3034 73 HOH TIP . I 4 HOH A 34 3035 76 HOH TIP . I 4 HOH A 35 3036 77 HOH TIP . I 4 HOH A 36 3037 78 HOH TIP . I 4 HOH A 37 3038 81 HOH TIP . I 4 HOH A 38 3039 82 HOH TIP . I 4 HOH A 39 3040 85 HOH TIP . I 4 HOH A 40 3041 87 HOH TIP . I 4 HOH A 41 3042 88 HOH TIP . J 4 HOH B 1 3003 2 HOH TIP . J 4 HOH B 2 3004 6 HOH TIP . J 4 HOH B 3 3005 9 HOH TIP . J 4 HOH B 4 3006 12 HOH TIP . J 4 HOH B 5 3007 13 HOH TIP . J 4 HOH B 6 3008 17 HOH TIP . J 4 HOH B 7 3009 18 HOH TIP . J 4 HOH B 8 3010 19 HOH TIP . J 4 HOH B 9 3011 20 HOH TIP . J 4 HOH B 10 3012 21 HOH TIP . J 4 HOH B 11 3013 22 HOH TIP . J 4 HOH B 12 3014 23 HOH TIP . J 4 HOH B 13 3015 24 HOH TIP . J 4 HOH B 14 3016 25 HOH TIP . J 4 HOH B 15 3017 26 HOH TIP . J 4 HOH B 16 3018 28 HOH TIP . J 4 HOH B 17 3019 29 HOH TIP . J 4 HOH B 18 3020 30 HOH TIP . J 4 HOH B 19 3021 40 HOH TIP . J 4 HOH B 20 3022 41 HOH TIP . J 4 HOH B 21 3023 43 HOH TIP . J 4 HOH B 22 3024 44 HOH TIP . J 4 HOH B 23 3025 45 HOH TIP . J 4 HOH B 24 3026 46 HOH TIP . J 4 HOH B 25 3027 47 HOH TIP . J 4 HOH B 26 3028 48 HOH TIP . J 4 HOH B 27 3029 49 HOH TIP . J 4 HOH B 28 3030 52 HOH TIP . J 4 HOH B 29 3031 53 HOH TIP . J 4 HOH B 30 3032 56 HOH TIP . J 4 HOH B 31 3033 57 HOH TIP . J 4 HOH B 32 3034 59 HOH TIP . J 4 HOH B 33 3035 62 HOH TIP . J 4 HOH B 34 3036 63 HOH TIP . J 4 HOH B 35 3037 64 HOH TIP . J 4 HOH B 36 3038 66 HOH TIP . J 4 HOH B 37 3039 68 HOH TIP . J 4 HOH B 38 3040 69 HOH TIP . J 4 HOH B 39 3041 70 HOH TIP . J 4 HOH B 40 3042 71 HOH TIP . J 4 HOH B 41 3043 74 HOH TIP . J 4 HOH B 42 3044 75 HOH TIP . J 4 HOH B 43 3045 79 HOH TIP . J 4 HOH B 44 3046 80 HOH TIP . J 4 HOH B 45 3047 83 HOH TIP . J 4 HOH B 46 3048 84 HOH TIP . J 4 HOH B 47 3049 86 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . G 2 29.193 156.608 220.453 1 72 ? S SO4 2002 B 1 HETATM 2 O O1 SO4 . . . G 2 28.14 155.543 220.525 1 70.85 ? O1 SO4 2002 B 1 HETATM 3 O O2 SO4 . . . G 2 29.116 157.47 221.678 1 73.6 ? O2 SO4 2002 B 1 HETATM 4 O O3 SO4 . . . G 2 30.547 155.966 220.378 1 74.05 ? O3 SO4 2002 B 1 HETATM 5 O O4 SO4 . . . G 2 28.972 157.453 219.233 1 67.66 ? O4 SO4 2002 B 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 5 #