data_1VC2 # _model_server_result.job_id T46tVn7GwZrOoHzImICHIQ _model_server_result.datetime_utc '2025-02-05 15:03:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vc2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":336}' # _entry.id 1VC2 # _exptl.entry_id 1VC2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 663.425 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VC2 _cell.length_a 94.221 _cell.length_b 94.221 _cell.length_c 146.078 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VC2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_655 -x+1,-y,z -1 0 0 0 -1 0 0 0 1 94.221 0 0 3 'crystal symmetry operation' 8_554 x-y,-y,-z-1 1 0 0 0 -1 0 0 0 -1 0 0 -146.078 4 'crystal symmetry operation' 11_654 -x+y+1,y,-z-1 -1 0 0 0 1 0 0 0 -1 94.221 0 -146.078 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 237 n n PA O2A NAD sing 238 n n PA O5B NAD sing 239 n n PA O3 NAD sing 240 n n O2A HOA2 NAD sing 241 n n O5B C5B NAD sing 242 n n C5B C4B NAD sing 243 n n C5B H51A NAD sing 244 n n C5B H52A NAD sing 245 n n C4B O4B NAD sing 246 n n C4B C3B NAD sing 247 n n C4B H4B NAD sing 248 n n O4B C1B NAD sing 249 n n C3B O3B NAD sing 250 n n C3B C2B NAD sing 251 n n C3B H3B NAD sing 252 n n O3B HO3A NAD sing 253 n n C2B O2B NAD sing 254 n n C2B C1B NAD sing 255 n n C2B H2B NAD sing 256 n n O2B HO2A NAD sing 257 n n C1B N9A NAD sing 258 n n C1B H1B NAD sing 259 n n N9A C8A NAD sing 260 n y N9A C4A NAD sing 261 n y C8A N7A NAD doub 262 n y C8A H8A NAD sing 263 n n N7A C5A NAD sing 264 n y C5A C6A NAD sing 265 n y C5A C4A NAD doub 266 n y C6A N6A NAD sing 267 n n C6A N1A NAD doub 268 n y N6A H61A NAD sing 269 n n N6A H62A NAD sing 270 n n N1A C2A NAD sing 271 n y C2A N3A NAD doub 272 n y C2A H2A NAD sing 273 n n N3A C4A NAD sing 274 n y O3 PN NAD sing 275 n n PN O1N NAD doub 276 n n PN O2N NAD sing 277 n n PN O5D NAD sing 278 n n O5D C5D NAD sing 279 n n C5D C4D NAD sing 280 n n C5D H51N NAD sing 281 n n C5D H52N NAD sing 282 n n C4D O4D NAD sing 283 n n C4D C3D NAD sing 284 n n C4D H4D NAD sing 285 n n O4D C1D NAD sing 286 n n C3D O3D NAD sing 287 n n C3D C2D NAD sing 288 n n C3D H3D NAD sing 289 n n O3D HO3N NAD sing 290 n n C2D O2D NAD sing 291 n n C2D C1D NAD sing 292 n n C2D H2D NAD sing 293 n n O2D HO2N NAD sing 294 n n C1D N1N NAD sing 295 n n C1D H1D NAD sing 296 n n N1N C2N NAD sing 297 n y N1N C6N NAD doub 298 n y C2N C3N NAD doub 299 n y C2N H2N NAD sing 300 n n C3N C7N NAD sing 301 n n C3N C4N NAD sing 302 n y C7N O7N NAD doub 303 n n C7N N7N NAD sing 304 n n N7N H71N NAD sing 305 n n N7N H72N NAD sing 306 n n C4N C5N NAD doub 307 n y C4N H4N NAD sing 308 n n C5N C6N NAD sing 309 n y C5N H5N NAD sing 310 n n C6N H6N NAD sing 311 n n # _atom_sites.entry_id 1VC2 _atom_sites.fract_transf_matrix[1][1] 0.010613 _atom_sites.fract_transf_matrix[1][2] 0.006128 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012255 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006846 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAD A 1 336 336 NAD NAD . C 3 HOH A 1 501 501 HOH TIP . C 3 HOH A 2 502 502 HOH TIP . C 3 HOH A 3 503 503 HOH TIP . C 3 HOH A 4 504 504 HOH TIP . C 3 HOH A 5 505 505 HOH TIP . C 3 HOH A 6 506 506 HOH TIP . C 3 HOH A 7 507 507 HOH TIP . C 3 HOH A 8 508 508 HOH TIP . C 3 HOH A 9 509 509 HOH TIP . C 3 HOH A 10 510 510 HOH TIP . C 3 HOH A 11 511 511 HOH TIP . C 3 HOH A 12 512 512 HOH TIP . C 3 HOH A 13 513 513 HOH TIP . C 3 HOH A 14 514 514 HOH TIP . C 3 HOH A 15 515 515 HOH TIP . C 3 HOH A 16 516 516 HOH TIP . C 3 HOH A 17 517 517 HOH TIP . C 3 HOH A 18 518 518 HOH TIP . C 3 HOH A 19 519 519 HOH TIP . C 3 HOH A 20 520 520 HOH TIP . C 3 HOH A 21 521 521 HOH TIP . C 3 HOH A 22 522 522 HOH TIP . C 3 HOH A 23 523 523 HOH TIP . C 3 HOH A 24 524 524 HOH TIP . C 3 HOH A 25 525 525 HOH TIP . C 3 HOH A 26 526 526 HOH TIP . C 3 HOH A 27 527 527 HOH TIP . C 3 HOH A 28 528 528 HOH TIP . C 3 HOH A 29 529 529 HOH TIP . C 3 HOH A 30 530 530 HOH TIP . C 3 HOH A 31 531 531 HOH TIP . C 3 HOH A 32 532 532 HOH TIP . C 3 HOH A 33 533 533 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . B 2 38.426 -4.463 -54.924 1 61.88 ? PA NAD 336 A 1 HETATM 2 O O1A NAD . . . B 2 37.556 -3.624 -55.736 1 62.64 ? O1A NAD 336 A 1 HETATM 3 O O2A NAD . . . B 2 39.77 -3.886 -54.771 1 62.1 ? O2A NAD 336 A 1 HETATM 4 O O5B NAD . . . B 2 37.941 -4.668 -53.418 1 64.76 ? O5B NAD 336 A 1 HETATM 5 C C5B NAD . . . B 2 36.548 -4.573 -53.027 1 64.83 ? C5B NAD 336 A 1 HETATM 6 C C4B NAD . . . B 2 36.369 -3.511 -51.958 1 65.58 ? C4B NAD 336 A 1 HETATM 7 O O4B NAD . . . B 2 36.708 -4.065 -50.65 1 64.26 ? O4B NAD 336 A 1 HETATM 8 C C3B NAD . . . B 2 37.263 -2.242 -52.063 1 65.23 ? C3B NAD 336 A 1 HETATM 9 O O3B NAD . . . B 2 36.496 -1.049 -52.327 1 67.13 ? O3B NAD 336 A 1 HETATM 10 C C2B NAD . . . B 2 37.991 -2.239 -50.719 1 64.41 ? C2B NAD 336 A 1 HETATM 11 O O2B NAD . . . B 2 38.228 -0.888 -50.262 1 63.95 ? O2B NAD 336 A 1 HETATM 12 C C1B NAD . . . B 2 37.005 -2.978 -49.852 1 63.67 ? C1B NAD 336 A 1 HETATM 13 N N9A NAD . . . B 2 37.586 -3.411 -48.569 1 63.13 ? N9A NAD 336 A 1 HETATM 14 C C8A NAD . . . B 2 38.872 -3.844 -48.275 1 63.13 ? C8A NAD 336 A 1 HETATM 15 N N7A NAD . . . B 2 39.066 -4.161 -46.962 1 62.42 ? N7A NAD 336 A 1 HETATM 16 C C5A NAD . . . B 2 37.806 -3.907 -46.391 1 62.28 ? C5A NAD 336 A 1 HETATM 17 C C6A NAD . . . B 2 37.317 -4.037 -45.031 1 60.86 ? C6A NAD 336 A 1 HETATM 18 N N6A NAD . . . B 2 38.077 -4.449 -44.019 1 60.15 ? N6A NAD 336 A 1 HETATM 19 N N1A NAD . . . B 2 35.983 -3.696 -44.806 1 60.9 ? N1A NAD 336 A 1 HETATM 20 C C2A NAD . . . B 2 35.194 -3.263 -45.863 1 60.93 ? C2A NAD 336 A 1 HETATM 21 N N3A NAD . . . B 2 35.549 -3.11 -47.138 1 61.67 ? N3A NAD 336 A 1 HETATM 22 C C4A NAD . . . B 2 36.874 -3.452 -47.358 1 62.97 ? C4A NAD 336 A 1 HETATM 23 O O3 NAD . . . B 2 38.447 -5.906 -55.552 1 63.69 ? O3 NAD 336 A 1 HETATM 24 P PN NAD . . . B 2 37.277 -6.82 -56.186 1 60.05 ? PN NAD 336 A 1 HETATM 25 O O1N NAD . . . B 2 37.666 -7.056 -57.599 1 58.47 ? O1N NAD 336 A 1 HETATM 26 O O2N NAD . . . B 2 36.016 -6.077 -56.05 1 62.64 ? O2N NAD 336 A 1 HETATM 27 O O5D NAD . . . B 2 37.274 -8.246 -55.502 1 61.23 ? O5D NAD 336 A 1 HETATM 28 C C5D NAD . . . B 2 36.727 -8.447 -54.187 1 60.93 ? C5D NAD 336 A 1 HETATM 29 C C4D NAD . . . B 2 36.822 -9.935 -53.875 1 60.94 ? C4D NAD 336 A 1 HETATM 30 O O4D NAD . . . B 2 36.099 -10.645 -54.928 1 60.08 ? O4D NAD 336 A 1 HETATM 31 C C3D NAD . . . B 2 38.232 -10.526 -53.829 1 62.37 ? C3D NAD 336 A 1 HETATM 32 O O3D NAD . . . B 2 38.429 -11.494 -52.786 1 64.68 ? O3D NAD 336 A 1 HETATM 33 C C2D NAD . . . B 2 38.372 -11.118 -55.226 1 62.43 ? C2D NAD 336 A 1 HETATM 34 O O2D NAD . . . B 2 39.391 -12.147 -55.253 1 64.28 ? O2D NAD 336 A 1 HETATM 35 C C1D NAD . . . B 2 36.966 -11.601 -55.482 1 62.57 ? C1D NAD 336 A 1 HETATM 36 N N1N NAD . . . B 2 36.662 -11.829 -56.929 1 64.11 ? N1N NAD 336 A 1 HETATM 37 C C2N NAD . . . B 2 37.122 -10.857 -57.816 1 64.57 ? C2N NAD 336 A 1 HETATM 38 C C3N NAD . . . B 2 36.865 -11.069 -59.168 1 66.27 ? C3N NAD 336 A 1 HETATM 39 C C7N NAD . . . B 2 37.328 -10.067 -60.235 1 66.17 ? C7N NAD 336 A 1 HETATM 40 O O7N NAD . . . B 2 37.094 -10.287 -61.413 1 65.76 ? O7N NAD 336 A 1 HETATM 41 N N7N NAD . . . B 2 37.983 -8.97 -59.866 1 66.99 ? N7N NAD 336 A 1 HETATM 42 C C4N NAD . . . B 2 36.145 -12.249 -59.631 1 65.75 ? C4N NAD 336 A 1 HETATM 43 C C5N NAD . . . B 2 35.735 -13.151 -58.618 1 65.87 ? C5N NAD 336 A 1 HETATM 44 C C6N NAD . . . B 2 35.956 -13.011 -57.27 1 65.39 ? C6N NAD 336 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 44 #