data_1VCD
#
_model_server_result.job_id            K54t8j73eCblPEl9nn6Clw 
_model_server_result.datetime_utc      '2025-06-23 20:57:24' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vcd 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":2002}' 
#
_entry.id    1VCD 
#
_exptl.entry_id    1VCD 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VCD 
_cell.length_a            49.559 
_cell.length_b            52.324 
_cell.length_c            114.009 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VCD 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,G 1 1 
B,E,F,H 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 F N N 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 97 n n 
C1 C2 GOL sing 98 n n 
C1 H11 GOL sing 99 n n 
C1 H12 GOL sing 100 n n 
O1 HO1 GOL sing 101 n n 
C2 O2 GOL sing 102 n n 
C2 C3 GOL sing 103 n n 
C2 H2 GOL sing 104 n n 
O2 HO2 GOL sing 105 n n 
C3 O3 GOL sing 106 n n 
C3 H31 GOL sing 107 n n 
C3 H32 GOL sing 108 n n 
O3 HO3 GOL sing 109 n n 
#
_atom_sites.entry_id                     1VCD 
_atom_sites.fract_transf_matrix[1][1]    0.020178 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.019112 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008771 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 SO4 A 1 1002 2 SO4 SO4 . 
D 3 GOL A 1 2001 1 GOL GOL . 
E 2 SO4 B 1 1001 1 SO4 SO4 . 
F 3 GOL B 1 2002 2 GOL GOL . 
G 4 HOH A 1 2002 5 HOH TIP . 
G 4 HOH A 2 2003 6 HOH TIP . 
G 4 HOH A 3 2004 7 HOH TIP . 
G 4 HOH A 4 2005 8 HOH TIP . 
G 4 HOH A 5 2006 9 HOH TIP . 
G 4 HOH A 6 2007 11 HOH TIP . 
G 4 HOH A 7 2008 16 HOH TIP . 
G 4 HOH A 8 2009 19 HOH TIP . 
G 4 HOH A 9 2010 20 HOH TIP . 
G 4 HOH A 10 2011 21 HOH TIP . 
G 4 HOH A 11 2012 25 HOH TIP . 
G 4 HOH A 12 2013 28 HOH TIP . 
G 4 HOH A 13 2014 30 HOH TIP . 
G 4 HOH A 14 2015 35 HOH TIP . 
G 4 HOH A 15 2016 39 HOH TIP . 
G 4 HOH A 16 2017 41 HOH TIP . 
G 4 HOH A 17 2018 43 HOH TIP . 
G 4 HOH A 18 2019 48 HOH TIP . 
G 4 HOH A 19 2020 51 HOH TIP . 
G 4 HOH A 20 2021 52 HOH TIP . 
G 4 HOH A 21 2022 54 HOH TIP . 
G 4 HOH A 22 2023 57 HOH TIP . 
G 4 HOH A 23 2024 61 HOH TIP . 
G 4 HOH A 24 2025 64 HOH TIP . 
G 4 HOH A 25 2026 65 HOH TIP . 
G 4 HOH A 26 2027 66 HOH TIP . 
G 4 HOH A 27 2028 67 HOH TIP . 
G 4 HOH A 28 2029 70 HOH TIP . 
G 4 HOH A 29 2030 72 HOH TIP . 
G 4 HOH A 30 2031 74 HOH TIP . 
G 4 HOH A 31 2032 75 HOH TIP . 
G 4 HOH A 32 2033 77 HOH TIP . 
G 4 HOH A 33 2034 80 HOH TIP . 
G 4 HOH A 34 2035 81 HOH TIP . 
G 4 HOH A 35 2036 82 HOH TIP . 
G 4 HOH A 36 2037 83 HOH TIP . 
G 4 HOH A 37 2038 84 HOH TIP . 
G 4 HOH A 38 2039 87 HOH TIP . 
G 4 HOH A 39 2040 89 HOH TIP . 
G 4 HOH A 40 2041 90 HOH TIP . 
G 4 HOH A 41 2042 92 HOH TIP . 
G 4 HOH A 42 2043 94 HOH TIP . 
G 4 HOH A 43 2044 97 HOH TIP . 
G 4 HOH A 44 2045 101 HOH TIP . 
G 4 HOH A 45 2046 103 HOH TIP . 
G 4 HOH A 46 2047 104 HOH TIP . 
G 4 HOH A 47 2048 107 HOH TIP . 
G 4 HOH A 48 2049 108 HOH TIP . 
G 4 HOH A 49 2050 110 HOH TIP . 
G 4 HOH A 50 2051 114 HOH TIP . 
G 4 HOH A 51 2052 115 HOH TIP . 
G 4 HOH A 52 2053 118 HOH TIP . 
G 4 HOH A 53 2054 120 HOH TIP . 
G 4 HOH A 54 2055 121 HOH TIP . 
G 4 HOH A 55 2056 125 HOH TIP . 
G 4 HOH A 56 2057 127 HOH TIP . 
G 4 HOH A 57 2058 129 HOH TIP . 
G 4 HOH A 58 2059 133 HOH TIP . 
G 4 HOH A 59 2060 136 HOH TIP . 
G 4 HOH A 60 2061 137 HOH TIP . 
G 4 HOH A 61 2062 138 HOH TIP . 
G 4 HOH A 62 2063 140 HOH TIP . 
G 4 HOH A 63 2064 143 HOH TIP . 
G 4 HOH A 64 2065 144 HOH TIP . 
G 4 HOH A 65 2066 147 HOH TIP . 
G 4 HOH A 66 2067 148 HOH TIP . 
G 4 HOH A 67 2068 149 HOH TIP . 
G 4 HOH A 68 2069 150 HOH TIP . 
G 4 HOH A 69 2070 153 HOH TIP . 
G 4 HOH A 70 2071 154 HOH TIP . 
G 4 HOH A 71 2072 157 HOH TIP . 
G 4 HOH A 72 2073 158 HOH TIP . 
G 4 HOH A 73 2074 159 HOH TIP . 
G 4 HOH A 74 2075 164 HOH TIP . 
G 4 HOH A 75 2076 170 HOH TIP . 
G 4 HOH A 76 2077 173 HOH TIP . 
G 4 HOH A 77 2078 175 HOH TIP . 
G 4 HOH A 78 2079 176 HOH TIP . 
G 4 HOH A 79 2080 178 HOH TIP . 
G 4 HOH A 80 2081 182 HOH TIP . 
G 4 HOH A 81 2082 184 HOH TIP . 
H 4 HOH B 1 2003 1 HOH TIP . 
H 4 HOH B 2 2004 2 HOH TIP . 
H 4 HOH B 3 2005 3 HOH TIP . 
H 4 HOH B 4 2006 4 HOH TIP . 
H 4 HOH B 5 2007 10 HOH TIP . 
H 4 HOH B 6 2008 12 HOH TIP . 
H 4 HOH B 7 2009 13 HOH TIP . 
H 4 HOH B 8 2010 15 HOH TIP . 
H 4 HOH B 9 2011 17 HOH TIP . 
H 4 HOH B 10 2012 18 HOH TIP . 
H 4 HOH B 11 2013 22 HOH TIP . 
H 4 HOH B 12 2014 23 HOH TIP . 
H 4 HOH B 13 2015 24 HOH TIP . 
H 4 HOH B 14 2016 26 HOH TIP . 
H 4 HOH B 15 2017 29 HOH TIP . 
H 4 HOH B 16 2018 31 HOH TIP . 
H 4 HOH B 17 2019 32 HOH TIP . 
H 4 HOH B 18 2020 33 HOH TIP . 
H 4 HOH B 19 2021 34 HOH TIP . 
H 4 HOH B 20 2022 36 HOH TIP . 
H 4 HOH B 21 2023 37 HOH TIP . 
H 4 HOH B 22 2024 38 HOH TIP . 
H 4 HOH B 23 2025 40 HOH TIP . 
H 4 HOH B 24 2026 42 HOH TIP . 
H 4 HOH B 25 2027 44 HOH TIP . 
H 4 HOH B 26 2028 45 HOH TIP . 
H 4 HOH B 27 2029 46 HOH TIP . 
H 4 HOH B 28 2030 47 HOH TIP . 
H 4 HOH B 29 2031 49 HOH TIP . 
H 4 HOH B 30 2032 50 HOH TIP . 
H 4 HOH B 31 2033 53 HOH TIP . 
H 4 HOH B 32 2034 55 HOH TIP . 
H 4 HOH B 33 2035 56 HOH TIP . 
H 4 HOH B 34 2036 58 HOH TIP . 
H 4 HOH B 35 2037 59 HOH TIP . 
H 4 HOH B 36 2038 60 HOH TIP . 
H 4 HOH B 37 2039 62 HOH TIP . 
H 4 HOH B 38 2040 68 HOH TIP . 
H 4 HOH B 39 2041 69 HOH TIP . 
H 4 HOH B 40 2042 71 HOH TIP . 
H 4 HOH B 41 2043 73 HOH TIP . 
H 4 HOH B 42 2044 76 HOH TIP . 
H 4 HOH B 43 2045 79 HOH TIP . 
H 4 HOH B 44 2046 85 HOH TIP . 
H 4 HOH B 45 2047 86 HOH TIP . 
H 4 HOH B 46 2048 88 HOH TIP . 
H 4 HOH B 47 2049 91 HOH TIP . 
H 4 HOH B 48 2050 93 HOH TIP . 
H 4 HOH B 49 2051 95 HOH TIP . 
H 4 HOH B 50 2052 96 HOH TIP . 
H 4 HOH B 51 2053 98 HOH TIP . 
H 4 HOH B 52 2054 99 HOH TIP . 
H 4 HOH B 53 2055 100 HOH TIP . 
H 4 HOH B 54 2056 102 HOH TIP . 
H 4 HOH B 55 2057 105 HOH TIP . 
H 4 HOH B 56 2058 106 HOH TIP . 
H 4 HOH B 57 2059 109 HOH TIP . 
H 4 HOH B 58 2060 111 HOH TIP . 
H 4 HOH B 59 2061 112 HOH TIP . 
H 4 HOH B 60 2062 113 HOH TIP . 
H 4 HOH B 61 2063 116 HOH TIP . 
H 4 HOH B 62 2064 117 HOH TIP . 
H 4 HOH B 63 2065 119 HOH TIP . 
H 4 HOH B 64 2066 122 HOH TIP . 
H 4 HOH B 65 2067 123 HOH TIP . 
H 4 HOH B 66 2068 124 HOH TIP . 
H 4 HOH B 67 2069 126 HOH TIP . 
H 4 HOH B 68 2070 128 HOH TIP . 
H 4 HOH B 69 2071 130 HOH TIP . 
H 4 HOH B 70 2072 131 HOH TIP . 
H 4 HOH B 71 2073 132 HOH TIP . 
H 4 HOH B 72 2074 134 HOH TIP . 
H 4 HOH B 73 2075 135 HOH TIP . 
H 4 HOH B 74 2076 139 HOH TIP . 
H 4 HOH B 75 2077 141 HOH TIP . 
H 4 HOH B 76 2078 142 HOH TIP . 
H 4 HOH B 77 2079 145 HOH TIP . 
H 4 HOH B 78 2080 146 HOH TIP . 
H 4 HOH B 79 2081 151 HOH TIP . 
H 4 HOH B 80 2082 152 HOH TIP . 
H 4 HOH B 81 2083 155 HOH TIP . 
H 4 HOH B 82 2084 156 HOH TIP . 
H 4 HOH B 83 2085 160 HOH TIP . 
H 4 HOH B 84 2086 161 HOH TIP . 
H 4 HOH B 85 2087 162 HOH TIP . 
H 4 HOH B 86 2088 163 HOH TIP . 
H 4 HOH B 87 2089 165 HOH TIP . 
H 4 HOH B 88 2090 166 HOH TIP . 
H 4 HOH B 89 2091 167 HOH TIP . 
H 4 HOH B 90 2092 168 HOH TIP . 
H 4 HOH B 91 2093 169 HOH TIP . 
H 4 HOH B 92 2094 171 HOH TIP . 
H 4 HOH B 93 2095 172 HOH TIP . 
H 4 HOH B 94 2096 174 HOH TIP . 
H 4 HOH B 95 2097 177 HOH TIP . 
H 4 HOH B 96 2098 179 HOH TIP . 
H 4 HOH B 97 2099 180 HOH TIP . 
H 4 HOH B 98 2100 181 HOH TIP . 
H 4 HOH B 99 2101 183 HOH TIP . 
H 4 HOH B 100 2102 185 HOH TIP . 
H 4 HOH B 101 2103 186 HOH TIP . 
H 4 HOH B 102 2104 187 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . F 3 54.563 25.668 69.498 1 39.33 ? C1 GOL 2002 B 1 
HETATM 2 O O1 GOL . . . F 3 55.4 25.097 70.764 1 32.88 ? O1 GOL 2002 B 1 
HETATM 3 C C2 GOL . . . F 3 53.502 26.595 69.53 1 39.63 ? C2 GOL 2002 B 1 
HETATM 4 O O2 GOL . . . F 3 53.548 27.422 68.475 1 39.95 ? O2 GOL 2002 B 1 
HETATM 5 C C3 GOL . . . F 3 52.799 26.455 70.508 1 41.76 ? C3 GOL 2002 B 1 
HETATM 6 O O3 GOL . . . F 3 52.205 25.933 71.855 1 42.94 ? O3 GOL 2002 B 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           302 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#