data_1VCI # _model_server_result.job_id qZ0Xnp2LQ1KdOhKH_G66eg _model_server_result.datetime_utc '2024-12-06 02:53:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vci # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":374}' # _entry.id 1VCI # _exptl.entry_id 1VCI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VCI _cell.length_a 79.84 _cell.length_b 79.84 _cell.length_c 130.08 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCI _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 79.84 79.84 65.04 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1VCI _atom_sites.fract_transf_matrix[1][1] 0.012525 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012525 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007688 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 374 304 ATP ATP . C 3 HOH A 1 375 1 HOH HOH . C 3 HOH A 2 376 2 HOH HOH . C 3 HOH A 3 377 3 HOH HOH . C 3 HOH A 4 378 4 HOH HOH . C 3 HOH A 5 379 5 HOH HOH . C 3 HOH A 6 380 6 HOH HOH . C 3 HOH A 7 381 7 HOH HOH . C 3 HOH A 8 382 8 HOH HOH . C 3 HOH A 9 383 9 HOH HOH . C 3 HOH A 10 384 10 HOH HOH . C 3 HOH A 11 385 11 HOH HOH . C 3 HOH A 12 386 12 HOH HOH . C 3 HOH A 13 387 13 HOH HOH . C 3 HOH A 14 388 14 HOH HOH . C 3 HOH A 15 389 15 HOH HOH . C 3 HOH A 16 390 16 HOH HOH . C 3 HOH A 17 391 17 HOH HOH . C 3 HOH A 18 392 18 HOH HOH . C 3 HOH A 19 393 19 HOH HOH . C 3 HOH A 20 394 20 HOH HOH . C 3 HOH A 21 395 21 HOH HOH . C 3 HOH A 22 396 22 HOH HOH . C 3 HOH A 23 397 23 HOH HOH . C 3 HOH A 24 398 24 HOH HOH . C 3 HOH A 25 399 25 HOH HOH . C 3 HOH A 26 400 26 HOH HOH . C 3 HOH A 27 401 27 HOH HOH . C 3 HOH A 28 402 28 HOH HOH . C 3 HOH A 29 403 29 HOH HOH . C 3 HOH A 30 404 30 HOH HOH . C 3 HOH A 31 405 31 HOH HOH . C 3 HOH A 32 406 32 HOH HOH . C 3 HOH A 33 407 33 HOH HOH . C 3 HOH A 34 408 34 HOH HOH . C 3 HOH A 35 409 35 HOH HOH . C 3 HOH A 36 410 36 HOH HOH . C 3 HOH A 37 411 37 HOH HOH . C 3 HOH A 38 412 38 HOH HOH . C 3 HOH A 39 413 39 HOH HOH . C 3 HOH A 40 414 40 HOH HOH . C 3 HOH A 41 415 41 HOH HOH . C 3 HOH A 42 416 42 HOH HOH . C 3 HOH A 43 417 43 HOH HOH . C 3 HOH A 44 418 44 HOH HOH . C 3 HOH A 45 419 45 HOH HOH . C 3 HOH A 46 420 46 HOH HOH . C 3 HOH A 47 421 47 HOH HOH . C 3 HOH A 48 422 48 HOH HOH . C 3 HOH A 49 423 49 HOH HOH . C 3 HOH A 50 424 50 HOH HOH . C 3 HOH A 51 425 51 HOH HOH . C 3 HOH A 52 426 52 HOH HOH . C 3 HOH A 53 427 53 HOH HOH . C 3 HOH A 54 428 54 HOH HOH . C 3 HOH A 55 429 55 HOH HOH . C 3 HOH A 56 430 56 HOH HOH . C 3 HOH A 57 431 57 HOH HOH . C 3 HOH A 58 432 58 HOH HOH . C 3 HOH A 59 433 59 HOH HOH . C 3 HOH A 60 434 60 HOH HOH . C 3 HOH A 61 435 61 HOH HOH . C 3 HOH A 62 436 62 HOH HOH . C 3 HOH A 63 437 63 HOH HOH . C 3 HOH A 64 438 64 HOH HOH . C 3 HOH A 65 439 65 HOH HOH . C 3 HOH A 66 440 66 HOH HOH . C 3 HOH A 67 441 67 HOH HOH . C 3 HOH A 68 442 68 HOH HOH . C 3 HOH A 69 443 69 HOH HOH . C 3 HOH A 70 444 70 HOH HOH . C 3 HOH A 71 445 71 HOH HOH . C 3 HOH A 72 446 72 HOH HOH . C 3 HOH A 73 447 73 HOH HOH . C 3 HOH A 74 448 74 HOH HOH . C 3 HOH A 75 449 75 HOH HOH . C 3 HOH A 76 450 76 HOH HOH . C 3 HOH A 77 451 77 HOH HOH . C 3 HOH A 78 452 78 HOH HOH . C 3 HOH A 79 453 79 HOH HOH . C 3 HOH A 80 454 80 HOH HOH . C 3 HOH A 81 455 81 HOH HOH . C 3 HOH A 82 456 82 HOH HOH . C 3 HOH A 83 457 83 HOH HOH . C 3 HOH A 84 458 84 HOH HOH . C 3 HOH A 85 459 85 HOH HOH . C 3 HOH A 86 460 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . B 2 29.288 49.746 19.348 1 87.76 ? PG ATP 374 A 1 HETATM 2 O O1G ATP . . . B 2 28.131 49.405 18.463 1 87.23 ? O1G ATP 374 A 1 HETATM 3 O O2G ATP . . . B 2 29.217 51.203 19.849 1 91.88 ? O2G ATP 374 A 1 HETATM 4 O O3G ATP . . . B 2 29.292 48.762 20.531 1 87.16 ? O3G ATP 374 A 1 HETATM 5 P PB ATP . . . B 2 31.027 48.165 17.733 1 90.8 ? PB ATP 374 A 1 HETATM 6 O O1B ATP . . . B 2 32.351 48.177 17.076 1 93.07 ? O1B ATP 374 A 1 HETATM 7 O O2B ATP . . . B 2 29.866 47.288 17.319 1 92.29 ? O2B ATP 374 A 1 HETATM 8 O O3B ATP . . . B 2 30.681 49.502 18.54 1 90.92 ? O3B ATP 374 A 1 HETATM 9 P PA ATP . . . B 2 29.462 49.178 15.432 1 72.14 ? PA ATP 374 A 1 HETATM 10 O O1A ATP . . . B 2 28.352 50.099 15.726 1 67.35 ? O1A ATP 374 A 1 HETATM 11 O O2A ATP . . . B 2 29.799 48.606 14.082 1 68.43 ? O2A ATP 374 A 1 HETATM 12 O O3A ATP . . . B 2 30.639 49.2 16.531 1 83.39 ? O3A ATP 374 A 1 HETATM 13 O O5' ATP . . . B 2 30.273 50.463 14.889 1 71.1 ? O5' ATP 374 A 1 HETATM 14 C C5' ATP . . . B 2 30.208 51.754 15.479 1 79.05 ? C5' ATP 374 A 1 HETATM 15 C C4' ATP . . . B 2 30.702 52.758 14.455 1 79.09 ? C4' ATP 374 A 1 HETATM 16 O O4' ATP . . . B 2 29.635 53.126 13.623 1 77.05 ? O4' ATP 374 A 1 HETATM 17 C C3' ATP . . . B 2 31.219 53.991 15.131 1 79.5 ? C3' ATP 374 A 1 HETATM 18 O O3' ATP . . . B 2 32.455 54.319 14.498 1 82.2 ? O3' ATP 374 A 1 HETATM 19 C C2' ATP . . . B 2 30.1 55.023 14.948 1 81.39 ? C2' ATP 374 A 1 HETATM 20 O O2' ATP . . . B 2 30.448 56.373 14.867 1 84.62 ? O2' ATP 374 A 1 HETATM 21 C C1' ATP . . . B 2 29.398 54.537 13.697 1 80.97 ? C1' ATP 374 A 1 HETATM 22 N N9 ATP . . . B 2 27.902 54.621 13.612 1 81.07 ? N9 ATP 374 A 1 HETATM 23 C C8 ATP . . . B 2 27.029 53.592 13.909 1 79.1 ? C8 ATP 374 A 1 HETATM 24 N N7 ATP . . . B 2 25.807 54.046 13.719 1 78.94 ? N7 ATP 374 A 1 HETATM 25 C C5 ATP . . . B 2 25.813 55.345 13.305 1 80.94 ? C5 ATP 374 A 1 HETATM 26 C C6 ATP . . . B 2 24.864 56.333 12.956 1 81.2 ? C6 ATP 374 A 1 HETATM 27 N N6 ATP . . . B 2 23.55 56.184 12.951 1 77.43 ? N6 ATP 374 A 1 HETATM 28 N N1 ATP . . . B 2 25.304 57.6 12.569 1 81.01 ? N1 ATP 374 A 1 HETATM 29 C C2 ATP . . . B 2 26.646 57.914 12.517 1 77.26 ? C2 ATP 374 A 1 HETATM 30 N N3 ATP . . . B 2 27.591 56.964 12.853 1 77.04 ? N3 ATP 374 A 1 HETATM 31 C C4 ATP . . . B 2 27.175 55.708 13.238 1 80.48 ? C4 ATP 374 A 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #