data_1VCR # _model_server_result.job_id cRd7oku5Ukq2QZyKiUl3nA _model_server_result.datetime_utc '2024-11-24 16:53:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":255}' # _entry.id 1VCR # _exptl.entry_id 1VCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 893.489 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VCR _cell.length_a 360.646 _cell.length_b 360.646 _cell.length_c 360.646 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA CLA sing 214 n n MG NB CLA sing 215 n n MG NC CLA sing 216 n n MG ND CLA sing 217 n n CHA C1A CLA sing 218 n n CHA C4D CLA doub 219 n n CHA CBD CLA sing 220 n n CHB C4A CLA doub 221 n n CHB C1B CLA sing 222 n n CHB HHB CLA sing 223 n n CHC C4B CLA sing 224 n n CHC C1C CLA doub 225 n n CHC HHC CLA sing 226 n n CHD C4C CLA sing 227 n n CHD C1D CLA doub 228 n n CHD HHD CLA sing 229 n n NA C1A CLA doub 230 n n NA C4A CLA sing 231 n n C1A C2A CLA sing 232 n n C2A C3A CLA sing 233 n n C2A CAA CLA sing 234 n n C2A H2A CLA sing 235 n n C3A C4A CLA sing 236 n n C3A CMA CLA sing 237 n n C3A H3A CLA sing 238 n n CMA HMA1 CLA sing 239 n n CMA HMA2 CLA sing 240 n n CMA HMA3 CLA sing 241 n n CAA CBA CLA sing 242 n n CAA HAA1 CLA sing 243 n n CAA HAA2 CLA sing 244 n n CBA CGA CLA sing 245 n n CBA HBA1 CLA sing 246 n n CBA HBA2 CLA sing 247 n n CGA O1A CLA doub 248 n n CGA O2A CLA sing 249 n n O2A C1 CLA sing 250 n n NB C1B CLA sing 251 n y NB C4B CLA sing 252 n y C1B C2B CLA doub 253 n y C2B C3B CLA sing 254 n y C2B CMB CLA sing 255 n n C3B C4B CLA doub 256 n y C3B CAB CLA sing 257 n n CMB HMB1 CLA sing 258 n n CMB HMB2 CLA sing 259 n n CMB HMB3 CLA sing 260 n n CAB CBB CLA doub 261 n n CAB HAB CLA sing 262 n n CBB HBB1 CLA sing 263 n n CBB HBB2 CLA sing 264 n n NC C1C CLA sing 265 n n NC C4C CLA doub 266 n n C1C C2C CLA sing 267 n n C2C C3C CLA doub 268 n n C2C CMC CLA sing 269 n n C3C C4C CLA sing 270 n n C3C CAC CLA sing 271 n n CMC HMC1 CLA sing 272 n n CMC HMC2 CLA sing 273 n n CMC HMC3 CLA sing 274 n n CAC CBC CLA sing 275 n n CAC HAC1 CLA sing 276 n n CAC HAC2 CLA sing 277 n n CBC HBC1 CLA sing 278 n n CBC HBC2 CLA sing 279 n n CBC HBC3 CLA sing 280 n n ND C1D CLA sing 281 n n ND C4D CLA sing 282 n n C1D C2D CLA sing 283 n n C2D C3D CLA doub 284 n n C2D CMD CLA sing 285 n n C3D C4D CLA sing 286 n n C3D CAD CLA sing 287 n n CMD HMD1 CLA sing 288 n n CMD HMD2 CLA sing 289 n n CMD HMD3 CLA sing 290 n n CAD OBD CLA doub 291 n n CAD CBD CLA sing 292 n n CBD CGD CLA sing 293 n n CBD HBD CLA sing 294 n n CGD O1D CLA doub 295 n n CGD O2D CLA sing 296 n n O2D CED CLA sing 297 n n CED HED1 CLA sing 298 n n CED HED2 CLA sing 299 n n CED HED3 CLA sing 300 n n C1 C2 CLA sing 301 n n C1 H11 CLA sing 302 n n C1 H12 CLA sing 303 n n C2 C3 CLA doub 304 e n C2 H2 CLA sing 305 n n C3 C4 CLA sing 306 n n C3 C5 CLA sing 307 n n C4 H41 CLA sing 308 n n C4 H42 CLA sing 309 n n C4 H43 CLA sing 310 n n C5 C6 CLA sing 311 n n C5 H51 CLA sing 312 n n C5 H52 CLA sing 313 n n C6 C7 CLA sing 314 n n C6 H61 CLA sing 315 n n C6 H62 CLA sing 316 n n C7 C8 CLA sing 317 n n C7 H71 CLA sing 318 n n C7 H72 CLA sing 319 n n C8 C9 CLA sing 320 n n C8 C10 CLA sing 321 n n C8 H8 CLA sing 322 n n C9 H91 CLA sing 323 n n C9 H92 CLA sing 324 n n C9 H93 CLA sing 325 n n C10 C11 CLA sing 326 n n C10 H101 CLA sing 327 n n C10 H102 CLA sing 328 n n C11 C12 CLA sing 329 n n C11 H111 CLA sing 330 n n C11 H112 CLA sing 331 n n C12 C13 CLA sing 332 n n C12 H121 CLA sing 333 n n C12 H122 CLA sing 334 n n C13 C14 CLA sing 335 n n C13 C15 CLA sing 336 n n C13 H13 CLA sing 337 n n C14 H141 CLA sing 338 n n C14 H142 CLA sing 339 n n C14 H143 CLA sing 340 n n C15 C16 CLA sing 341 n n C15 H151 CLA sing 342 n n C15 H152 CLA sing 343 n n C16 C17 CLA sing 344 n n C16 H161 CLA sing 345 n n C16 H162 CLA sing 346 n n C17 C18 CLA sing 347 n n C17 H171 CLA sing 348 n n C17 H172 CLA sing 349 n n C18 C19 CLA sing 350 n n C18 C20 CLA sing 351 n n C18 H18 CLA sing 352 n n C19 H191 CLA sing 353 n n C19 H192 CLA sing 354 n n C19 H193 CLA sing 355 n n C20 H201 CLA sing 356 n n C20 H202 CLA sing 357 n n C20 H203 CLA sing 358 n n # _atom_sites.entry_id 1VCR _atom_sites.fract_transf_matrix[1][1] 0.002773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLA A 1 251 251 CLA CLA . C 2 CLA A 1 252 252 CLA CLA . D 2 CLA A 1 253 253 CLA CLA . E 2 CLA A 1 254 254 CLA CLA . F 2 CLA A 1 255 255 CLA CLA . G 2 CLA A 1 256 256 CLA CLA . H 2 CLA A 1 257 257 CLA CLA . I 3 CHL A 1 261 261 CHL CLB . J 3 CHL A 1 262 262 CHL CLB . K 3 CHL A 1 263 263 CHL CLB . L 3 CHL A 1 265 265 CHL CLB . M 3 CHL A 1 266 266 CHL CLB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . F 2 105.95 5.816 30.968 1 296.52 ? MG CLA 255 A 1 HETATM 2 C CHA CLA . . . F 2 103.197 7.91 30.068 1 296.52 ? CHA CLA 255 A 1 HETATM 3 C CHB CLA . . . F 2 105.151 6.404 34.17 1 296.52 ? CHB CLA 255 A 1 HETATM 4 C CHC CLA . . . F 2 108.753 4.24 31.766 1 296.52 ? CHC CLA 255 A 1 HETATM 5 C CHD CLA . . . F 2 106.837 5.757 27.551 1 296.52 ? CHD CLA 255 A 1 HETATM 6 N NA CLA . . . F 2 104.411 7 31.985 1 296.52 ? NA CLA 255 A 1 HETATM 7 C C1A CLA . . . F 2 103.338 7.752 31.429 1 296.52 ? C1A CLA 255 A 1 HETATM 8 C C2A CLA . . . F 2 102.404 8.348 32.496 1 296.52 ? C2A CLA 255 A 1 HETATM 9 C C3A CLA . . . F 2 103.071 7.848 33.835 1 296.52 ? C3A CLA 255 A 1 HETATM 10 C C4A CLA . . . F 2 104.265 7.041 33.311 1 296.52 ? C4A CLA 255 A 1 HETATM 11 N NB CLA . . . F 2 106.814 5.394 32.681 1 296.52 ? NB CLA 255 A 1 HETATM 12 C C1B CLA . . . F 2 106.294 5.64 33.92 1 296.52 ? C1B CLA 255 A 1 HETATM 13 C C2B CLA . . . F 2 107.149 5.018 34.928 1 296.52 ? C2B CLA 255 A 1 HETATM 14 C C3B CLA . . . F 2 108.174 4.413 34.262 1 296.52 ? C3B CLA 255 A 1 HETATM 15 C C4B CLA . . . F 2 107.95 4.663 32.809 1 296.52 ? C4B CLA 255 A 1 HETATM 16 N NC CLA . . . F 2 107.531 5.13 29.849 1 296.52 ? NC CLA 255 A 1 HETATM 17 C C1C CLA . . . F 2 108.594 4.447 30.379 1 296.26 ? C1C CLA 255 A 1 HETATM 18 C C2C CLA . . . F 2 109.562 3.944 29.358 1 296.19 ? C2C CLA 255 A 1 HETATM 19 C C3C CLA . . . F 2 108.965 4.495 28.054 1 296.29 ? C3C CLA 255 A 1 HETATM 20 C C4C CLA . . . F 2 107.699 5.173 28.459 1 296.52 ? C4C CLA 255 A 1 HETATM 21 N ND CLA . . . F 2 105.21 6.645 29.135 1 296.52 ? ND CLA 255 A 1 HETATM 22 C C1D CLA . . . F 2 105.628 6.458 27.832 1 296.52 ? C1D CLA 255 A 1 HETATM 23 C C2D CLA . . . F 2 104.753 7.062 26.925 1 296.52 ? C2D CLA 255 A 1 HETATM 24 C C3D CLA . . . F 2 103.77 7.649 27.766 1 296.52 ? C3D CLA 255 A 1 HETATM 25 C C4D CLA . . . F 2 104.085 7.376 29.096 1 296.52 ? C4D CLA 255 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 721 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #