data_1VCR # _model_server_result.job_id 9HTdg3cYT75Z6IdqA3Uzwg _model_server_result.datetime_utc '2024-11-24 16:54:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vcr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":262}' # _entry.id 1VCR # _exptl.entry_id 1VCR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 907.472 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL B' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VCR _cell.length_a 360.646 _cell.length_b 360.646 _cell.length_c 360.646 _cell.Z_PDB 240 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCR _symmetry.cell_setting ? _symmetry.Int_Tables_number 196 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'F 2 3' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 K N N ? 3 L N N ? 3 M N N # _chem_comp.formula 'C55 H70 Mg N4 O6 2' _chem_comp.formula_weight 907.472 _chem_comp.id CHL _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL B' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag MG NA CHL sing 70 n n MG NB CHL sing 71 n n MG NC CHL sing 72 n n MG ND CHL sing 73 n n CHA C1A CHL sing 74 n n CHA C4D CHL doub 75 n n CHA CBD CHL sing 76 n n CHB C4A CHL doub 77 n n CHB C1B CHL sing 78 n n CHC C4B CHL sing 79 n n CHC C1C CHL doub 80 n n CHD C4C CHL sing 81 n n CHD C1D CHL doub 82 n n NA C1A CHL doub 83 n n NA C4A CHL sing 84 n n C1A C2A CHL sing 85 n n C2A C3A CHL sing 86 n n C2A CAA CHL sing 87 n n C3A C4A CHL sing 88 n n C3A CMA CHL sing 89 n n CAA CBA CHL sing 90 n n CBA CGA CHL sing 91 n n CGA O1A CHL doub 92 n n CGA O2A CHL sing 93 n n O2A C1 CHL sing 94 n n NB C1B CHL sing 95 n y NB C4B CHL sing 96 n y C1B C2B CHL doub 97 n y C2B C3B CHL sing 98 n y C2B CMB CHL sing 99 n n C3B C4B CHL doub 100 n y C3B CAB CHL sing 101 n n CAB CBB CHL doub 102 n n NC C1C CHL sing 103 n n NC C4C CHL doub 104 n n C1C C2C CHL sing 105 n n C2C C3C CHL doub 106 n n C2C CMC CHL sing 107 n n C3C C4C CHL sing 108 n n C3C CAC CHL sing 109 n n CMC OMC CHL doub 110 n n CAC CBC CHL sing 111 n n ND C1D CHL sing 112 n n ND C4D CHL sing 113 n n C1D C2D CHL sing 114 n n C2D C3D CHL doub 115 n n C2D CMD CHL sing 116 n n C3D C4D CHL sing 117 n n C3D CAD CHL sing 118 n n CAD OBD CHL doub 119 n n CAD CBD CHL sing 120 n n CBD CGD CHL sing 121 n n CGD O1D CHL doub 122 n n CGD O2D CHL sing 123 n n O2D CED CHL sing 124 n n C1 C2 CHL sing 125 n n C2 C3 CHL doub 126 e n C3 C4 CHL sing 127 n n C3 C5 CHL sing 128 n n C5 C6 CHL sing 129 n n C6 C7 CHL sing 130 n n C7 C8 CHL sing 131 n n C8 C9 CHL sing 132 n n C8 C10 CHL sing 133 n n C10 C11 CHL sing 134 n n C11 C12 CHL sing 135 n n C12 C13 CHL sing 136 n n C13 C14 CHL sing 137 n n C13 C15 CHL sing 138 n n C15 C16 CHL sing 139 n n C16 C17 CHL sing 140 n n C17 C18 CHL sing 141 n n C18 C19 CHL sing 142 n n C18 C20 CHL sing 143 n n CHB H1 CHL sing 144 n n CHC H2 CHL sing 145 n n CHD H3 CHL sing 146 n n CMA H4 CHL sing 147 n n CMA H5 CHL sing 148 n n CMA H6 CHL sing 149 n n CAA H7 CHL sing 150 n n CAA H8 CHL sing 151 n n CBA H9 CHL sing 152 n n CBA H10 CHL sing 153 n n CMB H11 CHL sing 154 n n CMB H12 CHL sing 155 n n CMB H13 CHL sing 156 n n CAB H14 CHL sing 157 n n CBB H15 CHL sing 158 n n CBB H16 CHL sing 159 n n CMC H17 CHL sing 160 n n CAC H18 CHL sing 161 n n CAC H19 CHL sing 162 n n CBC H20 CHL sing 163 n n CBC H21 CHL sing 164 n n CBC H22 CHL sing 165 n n CMD H23 CHL sing 166 n n CMD H24 CHL sing 167 n n CMD H25 CHL sing 168 n n CBD H26 CHL sing 169 n n CED H27 CHL sing 170 n n CED H28 CHL sing 171 n n CED H29 CHL sing 172 n n C1 H30 CHL sing 173 n n C1 H31 CHL sing 174 n n C2 H32 CHL sing 175 n n C4 H33 CHL sing 176 n n C4 H34 CHL sing 177 n n C4 H35 CHL sing 178 n n C5 H36 CHL sing 179 n n C5 H37 CHL sing 180 n n C6 H38 CHL sing 181 n n C6 H39 CHL sing 182 n n C7 H40 CHL sing 183 n n C7 H41 CHL sing 184 n n C8 H42 CHL sing 185 n n C9 H43 CHL sing 186 n n C9 H44 CHL sing 187 n n C9 H45 CHL sing 188 n n C10 H46 CHL sing 189 n n C10 H47 CHL sing 190 n n C11 H48 CHL sing 191 n n C11 H49 CHL sing 192 n n C12 H50 CHL sing 193 n n C12 H51 CHL sing 194 n n C13 H52 CHL sing 195 n n C14 H53 CHL sing 196 n n C14 H54 CHL sing 197 n n C14 H55 CHL sing 198 n n C15 H56 CHL sing 199 n n C16 H57 CHL sing 200 n n C17 H58 CHL sing 201 n n C17 H59 CHL sing 202 n n C18 H60 CHL sing 203 n n C19 H61 CHL sing 204 n n C19 H62 CHL sing 205 n n C19 H63 CHL sing 206 n n C20 H64 CHL sing 207 n n C20 H65 CHL sing 208 n n C20 H66 CHL sing 209 n n C2A H67 CHL sing 210 n n C3A H68 CHL sing 211 n n C15 H69 CHL sing 212 n n C16 H70 CHL sing 213 n n # _atom_sites.entry_id 1VCR _atom_sites.fract_transf_matrix[1][1] 0.002773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.002773 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002773 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 CLA A 1 251 251 CLA CLA . C 2 CLA A 1 252 252 CLA CLA . D 2 CLA A 1 253 253 CLA CLA . E 2 CLA A 1 254 254 CLA CLA . F 2 CLA A 1 255 255 CLA CLA . G 2 CLA A 1 256 256 CLA CLA . H 2 CLA A 1 257 257 CLA CLA . I 3 CHL A 1 261 261 CHL CLB . J 3 CHL A 1 262 262 CHL CLB . K 3 CHL A 1 263 263 CHL CLB . L 3 CHL A 1 265 265 CHL CLB . M 3 CHL A 1 266 266 CHL CLB . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CHL . . . J 3 107.174 30.196 40.093 1 296.52 ? MG CHL 262 A 1 HETATM 2 C CHA CHL . . . J 3 105.954 31.816 43.035 1 296.52 ? CHA CHL 262 A 1 HETATM 3 C CHB CHL . . . J 3 110.052 31.853 40.56 1 296.52 ? CHB CHL 262 A 1 HETATM 4 C CHC CHL . . . J 3 108.419 28.359 37.632 1 296.52 ? CHC CHL 262 A 1 HETATM 5 C CHD CHL . . . J 3 104.231 28.247 40.118 1 296.52 ? CHD CHL 262 A 1 HETATM 6 N NA CHL . . . J 3 107.915 31.616 41.589 1 296.52 ? NA CHL 262 A 1 HETATM 7 C C1A CHL . . . J 3 107.235 32.194 42.697 1 296.52 ? C1A CHL 262 A 1 HETATM 8 C C2A CHL . . . J 3 108.079 33.242 43.442 1 296.52 ? C2A CHL 262 A 1 HETATM 9 C C3A CHL . . . J 3 109.423 33.231 42.617 1 296.52 ? C3A CHL 262 A 1 HETATM 10 C C4A CHL . . . J 3 109.12 32.189 41.533 1 296.52 ? C4A CHL 262 A 1 HETATM 11 N NB CHL . . . J 3 108.942 30.113 39.238 1 296.52 ? NB CHL 262 A 1 HETATM 12 C C1B CHL . . . J 3 109.997 30.939 39.504 1 296.52 ? C1B CHL 262 A 1 HETATM 13 C C2B CHL . . . J 3 111.062 30.677 38.538 1 296.52 ? C2B CHL 262 A 1 HETATM 14 C C3B CHL . . . J 3 110.616 29.686 37.713 1 296.52 ? C3B CHL 262 A 1 HETATM 15 C C4B CHL . . . J 3 109.245 29.326 38.174 1 296.52 ? C4B CHL 262 A 1 HETATM 16 N NC CHL . . . J 3 106.452 28.572 39.064 1 296.52 ? NC CHL 262 A 1 HETATM 17 C C1C CHL . . . J 3 107.118 27.976 38.025 1 296.52 ? C1C CHL 262 A 1 HETATM 18 C C2C CHL . . . J 3 106.345 26.888 37.352 1 295.59 ? C2C CHL 262 A 1 HETATM 19 C C3C CHL . . . J 3 105.065 26.835 38.199 1 296.22 ? C3C CHL 262 A 1 HETATM 20 C C4C CHL . . . J 3 105.212 27.934 39.197 1 296.52 ? C4C CHL 262 A 1 HETATM 21 N ND CHL . . . J 3 105.415 30.018 41.303 1 296.52 ? ND CHL 262 A 1 HETATM 22 C C1D CHL . . . J 3 104.282 29.246 41.133 1 296.52 ? C1D CHL 262 A 1 HETATM 23 C C2D CHL . . . J 3 103.302 29.565 42.077 1 296.52 ? C2D CHL 262 A 1 HETATM 24 C C3D CHL . . . J 3 103.92 30.582 42.852 1 296.52 ? C3D CHL 262 A 1 HETATM 25 C C4D CHL . . . J 3 105.198 30.825 42.354 1 296.52 ? C4D CHL 262 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 765 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 25 #