data_1VCU # _model_server_result.job_id p-TaQG0vl9R_0CzuhRtN4A _model_server_result.datetime_utc '2024-12-21 12:22:05' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vcu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":382}' # _entry.id 1VCU # _exptl.entry_id 1VCU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90.64 _cell.angle_gamma 90 _cell.entry_id 1VCU _cell.length_a 157.65 _cell.length_b 74 _cell.length_c 77.19 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCU _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 120 n n N1 C6 EPE sing 121 n n N1 C9 EPE sing 122 n n C2 C3 EPE sing 123 n n C2 H21 EPE sing 124 n n C2 H22 EPE sing 125 n n C3 N4 EPE sing 126 n n C3 H31 EPE sing 127 n n C3 H32 EPE sing 128 n n N4 C5 EPE sing 129 n n N4 C7 EPE sing 130 n n C5 C6 EPE sing 131 n n C5 H51 EPE sing 132 n n C5 H52 EPE sing 133 n n C6 H61 EPE sing 134 n n C6 H62 EPE sing 135 n n C7 C8 EPE sing 136 n n C7 H71 EPE sing 137 n n C7 H72 EPE sing 138 n n C8 O8 EPE sing 139 n n C8 H81 EPE sing 140 n n C8 H82 EPE sing 141 n n O8 HO8 EPE sing 142 n n C9 C10 EPE sing 143 n n C9 H91 EPE sing 144 n n C9 H92 EPE sing 145 n n C10 S EPE sing 146 n n C10 H101 EPE sing 147 n n C10 H102 EPE sing 148 n n S O1S EPE doub 149 n n S O2S EPE doub 150 n n S O3S EPE sing 151 n n O3S HOS3 EPE sing 152 n n # _atom_sites.entry_id 1VCU _atom_sites.fract_transf_matrix[1][1] 0.006343 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.000071 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013514 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 DAN A 1 381 1 DAN DAN . D 3 EPE A 1 382 3 EPE EPE . E 3 EPE A 1 383 5 EPE EPE . F 2 DAN B 1 381 2 DAN DAN . G 3 EPE B 1 382 4 EPE EPE . H 3 EPE B 1 383 6 EPE EPE . I 4 HOH A 1 384 7 HOH TIP . I 4 HOH A 2 385 8 HOH TIP . I 4 HOH A 3 386 9 HOH TIP . I 4 HOH A 4 387 10 HOH TIP . I 4 HOH A 5 388 11 HOH TIP . I 4 HOH A 6 389 12 HOH TIP . I 4 HOH A 7 390 13 HOH TIP . I 4 HOH A 8 391 14 HOH TIP . I 4 HOH A 9 392 15 HOH TIP . I 4 HOH A 10 393 16 HOH TIP . I 4 HOH A 11 394 17 HOH TIP . I 4 HOH A 12 395 18 HOH TIP . I 4 HOH A 13 396 19 HOH TIP . I 4 HOH A 14 397 20 HOH TIP . I 4 HOH A 15 398 22 HOH TIP . I 4 HOH A 16 399 23 HOH TIP . I 4 HOH A 17 400 25 HOH TIP . I 4 HOH A 18 401 26 HOH TIP . I 4 HOH A 19 402 28 HOH TIP . I 4 HOH A 20 403 29 HOH TIP . I 4 HOH A 21 404 30 HOH TIP . I 4 HOH A 22 405 31 HOH TIP . I 4 HOH A 23 406 32 HOH TIP . I 4 HOH A 24 407 33 HOH TIP . I 4 HOH A 25 408 34 HOH TIP . I 4 HOH A 26 409 35 HOH TIP . I 4 HOH A 27 410 36 HOH TIP . I 4 HOH A 28 411 37 HOH TIP . I 4 HOH A 29 412 38 HOH TIP . I 4 HOH A 30 413 39 HOH TIP . I 4 HOH A 31 414 40 HOH TIP . I 4 HOH A 32 415 42 HOH TIP . I 4 HOH A 33 416 43 HOH TIP . I 4 HOH A 34 417 44 HOH TIP . I 4 HOH A 35 418 45 HOH TIP . I 4 HOH A 36 419 46 HOH TIP . I 4 HOH A 37 420 47 HOH TIP . I 4 HOH A 38 421 50 HOH TIP . I 4 HOH A 39 422 51 HOH TIP . I 4 HOH A 40 423 52 HOH TIP . I 4 HOH A 41 424 53 HOH TIP . I 4 HOH A 42 425 54 HOH TIP . I 4 HOH A 43 426 55 HOH TIP . I 4 HOH A 44 427 56 HOH TIP . I 4 HOH A 45 428 57 HOH TIP . I 4 HOH A 46 429 58 HOH TIP . I 4 HOH A 47 430 59 HOH TIP . I 4 HOH A 48 431 60 HOH TIP . I 4 HOH A 49 432 61 HOH TIP . I 4 HOH A 50 433 62 HOH TIP . I 4 HOH A 51 434 63 HOH TIP . I 4 HOH A 52 435 64 HOH TIP . I 4 HOH A 53 436 65 HOH TIP . I 4 HOH A 54 437 66 HOH TIP . I 4 HOH A 55 438 67 HOH TIP . I 4 HOH A 56 439 68 HOH TIP . I 4 HOH A 57 440 69 HOH TIP . I 4 HOH A 58 441 70 HOH TIP . I 4 HOH A 59 442 71 HOH TIP . I 4 HOH A 60 443 72 HOH TIP . I 4 HOH A 61 444 73 HOH TIP . I 4 HOH A 62 445 75 HOH TIP . I 4 HOH A 63 446 76 HOH TIP . I 4 HOH A 64 447 77 HOH TIP . I 4 HOH A 65 448 109 HOH TIP . I 4 HOH A 66 449 132 HOH TIP . I 4 HOH A 67 450 133 HOH TIP . I 4 HOH A 68 451 134 HOH TIP . I 4 HOH A 69 452 135 HOH TIP . I 4 HOH A 70 453 136 HOH TIP . I 4 HOH A 71 454 137 HOH TIP . J 4 HOH B 1 384 21 HOH TIP . J 4 HOH B 2 385 24 HOH TIP . J 4 HOH B 3 386 27 HOH TIP . J 4 HOH B 4 387 41 HOH TIP . J 4 HOH B 5 388 48 HOH TIP . J 4 HOH B 6 389 49 HOH TIP . J 4 HOH B 7 390 74 HOH TIP . J 4 HOH B 8 391 78 HOH TIP . J 4 HOH B 9 392 79 HOH TIP . J 4 HOH B 10 393 80 HOH TIP . J 4 HOH B 11 394 81 HOH TIP . J 4 HOH B 12 395 82 HOH TIP . J 4 HOH B 13 396 83 HOH TIP . J 4 HOH B 14 397 84 HOH TIP . J 4 HOH B 15 398 85 HOH TIP . J 4 HOH B 16 399 86 HOH TIP . J 4 HOH B 17 400 87 HOH TIP . J 4 HOH B 18 401 88 HOH TIP . J 4 HOH B 19 402 89 HOH TIP . J 4 HOH B 20 403 90 HOH TIP . J 4 HOH B 21 404 91 HOH TIP . J 4 HOH B 22 405 92 HOH TIP . J 4 HOH B 23 406 93 HOH TIP . J 4 HOH B 24 407 94 HOH TIP . J 4 HOH B 25 408 95 HOH TIP . J 4 HOH B 26 409 96 HOH TIP . J 4 HOH B 27 410 97 HOH TIP . J 4 HOH B 28 411 98 HOH TIP . J 4 HOH B 29 412 99 HOH TIP . J 4 HOH B 30 413 100 HOH TIP . J 4 HOH B 31 414 101 HOH TIP . J 4 HOH B 32 415 102 HOH TIP . J 4 HOH B 33 416 103 HOH TIP . J 4 HOH B 34 417 104 HOH TIP . J 4 HOH B 35 418 105 HOH TIP . J 4 HOH B 36 419 106 HOH TIP . J 4 HOH B 37 420 107 HOH TIP . J 4 HOH B 38 421 108 HOH TIP . J 4 HOH B 39 422 110 HOH TIP . J 4 HOH B 40 423 111 HOH TIP . J 4 HOH B 41 424 112 HOH TIP . J 4 HOH B 42 425 113 HOH TIP . J 4 HOH B 43 426 114 HOH TIP . J 4 HOH B 44 427 115 HOH TIP . J 4 HOH B 45 428 116 HOH TIP . J 4 HOH B 46 429 117 HOH TIP . J 4 HOH B 47 430 118 HOH TIP . J 4 HOH B 48 431 119 HOH TIP . J 4 HOH B 49 432 120 HOH TIP . J 4 HOH B 50 433 121 HOH TIP . J 4 HOH B 51 434 122 HOH TIP . J 4 HOH B 52 435 123 HOH TIP . J 4 HOH B 53 436 124 HOH TIP . J 4 HOH B 54 437 125 HOH TIP . J 4 HOH B 55 438 126 HOH TIP . J 4 HOH B 56 439 127 HOH TIP . J 4 HOH B 57 440 128 HOH TIP . J 4 HOH B 58 441 129 HOH TIP . J 4 HOH B 59 442 130 HOH TIP . J 4 HOH B 60 443 131 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . G 3 84.774 12.023 21.041 1 11.86 ? N1 EPE 382 B 1 HETATM 2 C C2 EPE . . . G 3 83.38 12.386 20.607 1 12.77 ? C2 EPE 382 B 1 HETATM 3 C C3 EPE . . . G 3 83.174 13.891 20.832 1 10.4 ? C3 EPE 382 B 1 HETATM 4 N N4 EPE . . . G 3 83.391 14.28 22.279 1 10.6 ? N4 EPE 382 B 1 HETATM 5 C C5 EPE . . . G 3 84.779 13.882 22.716 1 10.16 ? C5 EPE 382 B 1 HETATM 6 C C6 EPE . . . G 3 85.092 12.42 22.438 1 11.29 ? C6 EPE 382 B 1 HETATM 7 C C7 EPE . . . G 3 83.194 15.802 22.463 1 10.35 ? C7 EPE 382 B 1 HETATM 8 C C8 EPE . . . G 3 81.762 16.256 22.069 1 10.07 ? C8 EPE 382 B 1 HETATM 9 O O8 EPE . . . G 3 81.687 16.688 20.724 1 5.95 ? O8 EPE 382 B 1 HETATM 10 C C9 EPE . . . G 3 85.067 10.58 20.851 1 13.81 ? C9 EPE 382 B 1 HETATM 11 C C10 EPE . . . G 3 84.756 10.002 19.491 1 14.55 ? C10 EPE 382 B 1 HETATM 12 S S EPE . . . G 3 85.236 8.248 19.544 1 18.33 ? S EPE 382 B 1 HETATM 13 O O1S EPE . . . G 3 84.91 7.621 18.276 1 18.86 ? O1S EPE 382 B 1 HETATM 14 O O2S EPE . . . G 3 84.667 7.685 20.764 1 14.01 ? O2S EPE 382 B 1 HETATM 15 O O3S EPE . . . G 3 86.903 8.249 19.526 1 13.73 ? O3S EPE 382 B 1 # _model_server_stats.io_time_ms 6 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 251 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 15 #