data_1VCY # _model_server_result.job_id u3AZabTOQ64rO9YXLZKCng _model_server_result.datetime_utc '2024-10-19 23:38:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vcy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":1004}' # _entry.id 1VCY # _exptl.entry_id 1VCY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 102.046 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MALONATE ION' _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VCY _cell.length_a 56.107 _cell.length_b 56.107 _cell.length_c 132.427 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VCY _symmetry.cell_setting ? _symmetry.Int_Tables_number 93 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 42 2 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N # _chem_comp.formula 'C3 H2 O4 -2' _chem_comp.formula_weight 102.046 _chem_comp.id MLI _chem_comp.mon_nstd_flag . _chem_comp.name 'MALONATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MLI sing 203 n n C1 C3 MLI sing 204 n n C1 H11 MLI sing 205 n n C1 H12 MLI sing 206 n n C2 O6 MLI doub 207 n n C2 O7 MLI sing 208 n n C3 O8 MLI doub 209 n n C3 O9 MLI sing 210 n n # _atom_sites.entry_id 1VCY _atom_sites.fract_transf_matrix[1][1] 0.017823 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017823 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007551 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MLI A 1 1001 1001 MLI MLA . C 2 MLI A 1 1002 1002 MLI MLA . D 2 MLI A 1 1003 1003 MLI MLA . E 2 MLI A 1 1004 1004 MLI MLA . F 2 MLI A 1 1005 1005 MLI MLA . G 3 HOH A 1 3001 3001 HOH TIP . G 3 HOH A 2 3002 3002 HOH TIP . G 3 HOH A 3 3003 3003 HOH TIP . G 3 HOH A 4 3004 3004 HOH TIP . G 3 HOH A 5 3005 3005 HOH TIP . G 3 HOH A 6 3006 3006 HOH TIP . G 3 HOH A 7 3007 3007 HOH TIP . G 3 HOH A 8 3008 3008 HOH TIP . G 3 HOH A 9 3009 3009 HOH TIP . G 3 HOH A 10 3010 3010 HOH TIP . G 3 HOH A 11 3011 3011 HOH TIP . G 3 HOH A 12 3012 3012 HOH TIP . G 3 HOH A 13 3013 3013 HOH TIP . G 3 HOH A 14 3014 3014 HOH TIP . G 3 HOH A 15 3015 3015 HOH TIP . G 3 HOH A 16 3016 3016 HOH TIP . G 3 HOH A 17 3017 3017 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MLI . . . E 2 41.546 -1.833 12.741 1 104.55 ? C1 MLI 1004 A 1 HETATM 2 C C2 MLI . . . E 2 42.319 -0.525 13.001 1 104.42 ? C2 MLI 1004 A 1 HETATM 3 C C3 MLI . . . E 2 40.772 -2.457 13.905 1 104.84 ? C3 MLI 1004 A 1 HETATM 4 O O6 MLI . . . E 2 43.474 -0.443 13.273 1 103.94 ? O6 MLI 1004 A 1 HETATM 5 O O7 MLI . . . E 2 41.535 0.558 12.886 1 104.31 ? O7 MLI 1004 A 1 HETATM 6 O O8 MLI . . . E 2 41.228 -3.151 14.745 1 105.18 ? O8 MLI 1004 A 1 HETATM 7 O O9 MLI . . . E 2 39.472 -2.13 13.886 1 105.37 ? O9 MLI 1004 A 1 # _model_server_stats.io_time_ms 5 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 246 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 7 #