data_1VCZ
#
_model_server_result.job_id            fl5n2uWuFKBgD1UfPqqhyQ 
_model_server_result.datetime_utc      '2025-02-27 08:31:28' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vcz 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":295}' 
#
_entry.id    1VCZ 
#
_exptl.entry_id    1VCZ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              363.221 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "GUANOSINE-5'-MONOPHOSPHATE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VCZ 
_cell.length_a            37.28 
_cell.length_b            69.547 
_cell.length_c            73.969 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VCZ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 22 A CYS 18 1_555 A SG CYS 28 A CYS 24 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf2 A SG CYS 29 A CYS 25 1_555 A SG CYS 85 A CYS 81 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf3 A SG CYS 58 A CYS 54 1_555 A SG CYS 104 A CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
disulf ? disulf4 A SG CYS 163 A CYS 159 1_555 A SG CYS 199 A CYS 195 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf5 A SG CYS 179 A CYS 175 1_555 A SG CYS 190 A CYS 186 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? 
#
_chem_comp.formula           'C10 H14 N5 O8 P' 
_chem_comp.formula_weight    363.221 
_chem_comp.id                5GP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "GUANOSINE-5'-MONOPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1P 5GP doub 1 n n 
P O2P 5GP sing 2 n n 
P O3P 5GP sing 3 n n 
P O5' 5GP sing 4 n n 
O2P HOP2 5GP sing 5 n n 
O3P HOP3 5GP sing 6 n n 
O5' C5' 5GP sing 7 n n 
C5' C4' 5GP sing 8 n n 
C5' "H5'1" 5GP sing 9 n n 
C5' "H5'2" 5GP sing 10 n n 
C4' O4' 5GP sing 11 n n 
C4' C3' 5GP sing 12 n n 
C4' H4' 5GP sing 13 n n 
O4' C1' 5GP sing 14 n n 
C3' O3' 5GP sing 15 n n 
C3' C2' 5GP sing 16 n n 
C3' H3' 5GP sing 17 n n 
O3' HO3' 5GP sing 18 n n 
C2' O2' 5GP sing 19 n n 
C2' C1' 5GP sing 20 n n 
C2' H2' 5GP sing 21 n n 
O2' HO2' 5GP sing 22 n n 
C1' N9 5GP sing 23 n n 
C1' H1' 5GP sing 24 n n 
N9 C8 5GP sing 25 n y 
N9 C4 5GP sing 26 n y 
C8 N7 5GP doub 27 n y 
C8 H8 5GP sing 28 n n 
N7 C5 5GP sing 29 n y 
C5 C6 5GP sing 30 n n 
C5 C4 5GP doub 31 n y 
C6 O6 5GP doub 32 n n 
C6 N1 5GP sing 33 n n 
N1 C2 5GP sing 34 n n 
N1 HN1 5GP sing 35 n n 
C2 N2 5GP sing 36 n n 
C2 N3 5GP doub 37 n n 
N2 HN21 5GP sing 38 n n 
N2 HN22 5GP sing 39 n n 
N3 C4 5GP sing 40 n n 
#
_atom_sites.entry_id                     1VCZ 
_atom_sites.fract_transf_matrix[1][1]    0.026824 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014379 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.013519 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 5GP A 1 295 295 5GP 5GP . 
C 2 5GP A 1 296 296 5GP 5GP . 
D 3 HOH A 1 297 1 HOH TIP . 
D 3 HOH A 2 298 2 HOH TIP . 
D 3 HOH A 3 299 3 HOH TIP . 
D 3 HOH A 4 300 4 HOH TIP . 
D 3 HOH A 5 301 5 HOH TIP . 
D 3 HOH A 6 302 6 HOH TIP . 
D 3 HOH A 7 303 7 HOH TIP . 
D 3 HOH A 8 304 10 HOH TIP . 
D 3 HOH A 9 305 11 HOH TIP . 
D 3 HOH A 10 306 13 HOH TIP . 
D 3 HOH A 11 307 14 HOH TIP . 
D 3 HOH A 12 308 15 HOH TIP . 
D 3 HOH A 13 309 16 HOH TIP . 
D 3 HOH A 14 310 17 HOH TIP . 
D 3 HOH A 15 311 18 HOH TIP . 
D 3 HOH A 16 312 19 HOH TIP . 
D 3 HOH A 17 313 20 HOH TIP . 
D 3 HOH A 18 314 22 HOH TIP . 
D 3 HOH A 19 315 23 HOH TIP . 
D 3 HOH A 20 316 24 HOH TIP . 
D 3 HOH A 21 317 25 HOH TIP . 
D 3 HOH A 22 318 26 HOH TIP . 
D 3 HOH A 23 319 27 HOH TIP . 
D 3 HOH A 24 320 29 HOH TIP . 
D 3 HOH A 25 321 30 HOH TIP . 
D 3 HOH A 26 322 31 HOH TIP . 
D 3 HOH A 27 323 32 HOH TIP . 
D 3 HOH A 28 324 33 HOH TIP . 
D 3 HOH A 29 325 34 HOH TIP . 
D 3 HOH A 30 326 35 HOH TIP . 
D 3 HOH A 31 327 36 HOH TIP . 
D 3 HOH A 32 328 37 HOH TIP . 
D 3 HOH A 33 329 38 HOH TIP . 
D 3 HOH A 34 330 39 HOH TIP . 
D 3 HOH A 35 331 40 HOH TIP . 
D 3 HOH A 36 332 41 HOH TIP . 
D 3 HOH A 37 333 42 HOH TIP . 
D 3 HOH A 38 334 43 HOH TIP . 
D 3 HOH A 39 335 44 HOH TIP . 
D 3 HOH A 40 336 45 HOH TIP . 
D 3 HOH A 41 337 46 HOH TIP . 
D 3 HOH A 42 338 47 HOH TIP . 
D 3 HOH A 43 339 48 HOH TIP . 
D 3 HOH A 44 340 49 HOH TIP . 
D 3 HOH A 45 341 50 HOH TIP . 
D 3 HOH A 46 342 51 HOH TIP . 
D 3 HOH A 47 343 52 HOH TIP . 
D 3 HOH A 48 344 53 HOH TIP . 
D 3 HOH A 49 345 54 HOH TIP . 
D 3 HOH A 50 346 55 HOH TIP . 
D 3 HOH A 51 347 56 HOH TIP . 
D 3 HOH A 52 348 57 HOH TIP . 
D 3 HOH A 53 349 58 HOH TIP . 
D 3 HOH A 54 350 59 HOH TIP . 
D 3 HOH A 55 351 61 HOH TIP . 
D 3 HOH A 56 352 62 HOH TIP . 
D 3 HOH A 57 353 63 HOH TIP . 
D 3 HOH A 58 354 64 HOH TIP . 
D 3 HOH A 59 355 65 HOH TIP . 
D 3 HOH A 60 356 66 HOH TIP . 
D 3 HOH A 61 357 68 HOH TIP . 
D 3 HOH A 62 358 69 HOH TIP . 
D 3 HOH A 63 359 70 HOH TIP . 
D 3 HOH A 64 360 71 HOH TIP . 
D 3 HOH A 65 361 72 HOH TIP . 
D 3 HOH A 66 362 73 HOH TIP . 
D 3 HOH A 67 363 74 HOH TIP . 
D 3 HOH A 68 364 75 HOH TIP . 
D 3 HOH A 69 365 76 HOH TIP . 
D 3 HOH A 70 366 77 HOH TIP . 
D 3 HOH A 71 367 78 HOH TIP . 
D 3 HOH A 72 368 79 HOH TIP . 
D 3 HOH A 73 369 80 HOH TIP . 
D 3 HOH A 74 370 81 HOH TIP . 
D 3 HOH A 75 371 83 HOH TIP . 
D 3 HOH A 76 372 84 HOH TIP . 
D 3 HOH A 77 373 85 HOH TIP . 
D 3 HOH A 78 374 86 HOH TIP . 
D 3 HOH A 79 375 87 HOH TIP . 
D 3 HOH A 80 376 88 HOH TIP . 
D 3 HOH A 81 377 89 HOH TIP . 
D 3 HOH A 82 378 90 HOH TIP . 
D 3 HOH A 83 379 91 HOH TIP . 
D 3 HOH A 84 380 92 HOH TIP . 
D 3 HOH A 85 381 93 HOH TIP . 
D 3 HOH A 86 382 94 HOH TIP . 
D 3 HOH A 87 383 95 HOH TIP . 
D 3 HOH A 88 384 96 HOH TIP . 
D 3 HOH A 89 385 98 HOH TIP . 
D 3 HOH A 90 386 99 HOH TIP . 
D 3 HOH A 91 387 100 HOH TIP . 
D 3 HOH A 92 388 101 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P 5GP . . . B 2 -24.472 33.888 -61.057 1 79.99 ? P 5GP 295 A 1 
HETATM 2 O O1P 5GP . . . B 2 -23.461 33.704 -62.128 1 75.06 ? O1P 5GP 295 A 1 
HETATM 3 O O2P 5GP . . . B 2 -23.989 34.805 -59.936 1 75.33 ? O2P 5GP 295 A 1 
HETATM 4 O O3P 5GP . . . B 2 -25.837 34.414 -61.649 1 77.29 ? O3P 5GP 295 A 1 
HETATM 5 O O5' 5GP . . . B 2 -24.868 32.471 -60.351 1 71.59 ? O5' 5GP 295 A 1 
HETATM 6 C C5' 5GP . . . B 2 -25.771 32.423 -59.216 1 60.46 ? C5' 5GP 295 A 1 
HETATM 7 C C4' 5GP . . . B 2 -25.878 31.037 -58.582 1 47.66 ? C4' 5GP 295 A 1 
HETATM 8 O O4' 5GP . . . B 2 -25.606 31.258 -57.135 1 45 ? O4' 5GP 295 A 1 
HETATM 9 C C3' 5GP . . . B 2 -27.232 30.339 -58.59 1 43.84 ? C3' 5GP 295 A 1 
HETATM 10 O O3' 5GP . . . B 2 -27.451 29.524 -59.721 1 31.64 ? O3' 5GP 295 A 1 
HETATM 11 C C2' 5GP . . . B 2 -27.233 29.529 -57.296 1 40.41 ? C2' 5GP 295 A 1 
HETATM 12 O O2' 5GP . . . B 2 -26.541 28.279 -57.402 1 36.46 ? O2' 5GP 295 A 1 
HETATM 13 C C1' 5GP . . . B 2 -26.555 30.473 -56.35 1 41.18 ? C1' 5GP 295 A 1 
HETATM 14 N N9 5GP . . . B 2 -27.434 31.378 -55.591 1 35.03 ? N9 5GP 295 A 1 
HETATM 15 C C8 5GP . . . B 2 -27.787 32.688 -55.857 1 36.81 ? C8 5GP 295 A 1 
HETATM 16 N N7 5GP . . . B 2 -28.815 33.137 -55.188 1 39.47 ? N7 5GP 295 A 1 
HETATM 17 C C5 5GP . . . B 2 -29.114 32.047 -54.331 1 32.51 ? C5 5GP 295 A 1 
HETATM 18 C C6 5GP . . . B 2 -30.089 31.994 -53.292 1 30.19 ? C6 5GP 295 A 1 
HETATM 19 O O6 5GP . . . B 2 -30.853 32.88 -52.94 1 33.22 ? O6 5GP 295 A 1 
HETATM 20 N N1 5GP . . . B 2 -30.096 30.727 -52.64 1 25.7 ? N1 5GP 295 A 1 
HETATM 21 C C2 5GP . . . B 2 -29.258 29.66 -52.979 1 22.75 ? C2 5GP 295 A 1 
HETATM 22 N N2 5GP . . . B 2 -29.414 28.584 -52.186 1 20.19 ? N2 5GP 295 A 1 
HETATM 23 N N3 5GP . . . B 2 -28.353 29.686 -53.991 1 27.18 ? N3 5GP 295 A 1 
HETATM 24 C C4 5GP . . . B 2 -28.31 30.947 -54.598 1 32.16 ? C4 5GP 295 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           321 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           24 
#