data_1VDR
#
_model_server_result.job_id            ETDwY2Rh29E4JIw_u1pEbQ 
_model_server_result.datetime_utc      '2025-02-28 13:19:32' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vdr 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":163}' 
#
_entry.id    1VDR 
#
_exptl.entry_id    1VDR 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              94.971 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHATE ION' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          95.8 
_cell.angle_gamma         90 
_cell.entry_id            1VDR 
_cell.length_a            70.87 
_cell.length_b            59.45 
_cell.length_c            78.15 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VDR 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
#
_chem_comp.formula           'O4 P -3' 
_chem_comp.formula_weight    94.971 
_chem_comp.id                PO4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
P O1 PO4 doub 247 n n 
P O2 PO4 sing 248 n n 
P O3 PO4 sing 249 n n 
P O4 PO4 sing 250 n n 
#
_atom_sites.entry_id                     1VDR 
_atom_sites.fract_transf_matrix[1][1]    0.01411 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001433 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016821 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012862 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 163 2 PO4 PO4 . 
D 2 PO4 A 1 164 3 PO4 PO4 . 
E 2 PO4 B 1 163 1 PO4 PO4 . 
F 3 HOH A 1 165 3 HOH HOH . 
F 3 HOH A 2 166 4 HOH HOH . 
F 3 HOH A 3 167 8 HOH HOH . 
F 3 HOH A 4 168 10 HOH HOH . 
F 3 HOH A 5 169 15 HOH HOH . 
F 3 HOH A 6 170 18 HOH HOH . 
F 3 HOH A 7 171 20 HOH HOH . 
F 3 HOH A 8 172 27 HOH HOH . 
F 3 HOH A 9 173 29 HOH HOH . 
F 3 HOH A 10 174 32 HOH HOH . 
F 3 HOH A 11 175 33 HOH HOH . 
F 3 HOH A 12 176 37 HOH HOH . 
F 3 HOH A 13 177 39 HOH HOH . 
F 3 HOH A 14 178 40 HOH HOH . 
F 3 HOH A 15 179 41 HOH HOH . 
F 3 HOH A 16 180 43 HOH HOH . 
F 3 HOH A 17 181 44 HOH HOH . 
F 3 HOH A 18 182 45 HOH HOH . 
F 3 HOH A 19 183 47 HOH HOH . 
F 3 HOH A 20 184 58 HOH HOH . 
F 3 HOH A 21 185 60 HOH HOH . 
F 3 HOH A 22 186 63 HOH HOH . 
F 3 HOH A 23 187 64 HOH HOH . 
F 3 HOH A 24 188 69 HOH HOH . 
F 3 HOH A 25 189 70 HOH HOH . 
F 3 HOH A 26 190 72 HOH HOH . 
F 3 HOH A 27 191 79 HOH HOH . 
F 3 HOH A 28 192 81 HOH HOH . 
F 3 HOH A 29 193 82 HOH HOH . 
G 3 HOH B 1 164 5 HOH HOH . 
G 3 HOH B 2 165 6 HOH HOH . 
G 3 HOH B 3 166 7 HOH HOH . 
G 3 HOH B 4 167 9 HOH HOH . 
G 3 HOH B 5 168 11 HOH HOH . 
G 3 HOH B 6 169 12 HOH HOH . 
G 3 HOH B 7 170 13 HOH HOH . 
G 3 HOH B 8 171 14 HOH HOH . 
G 3 HOH B 9 172 16 HOH HOH . 
G 3 HOH B 10 173 17 HOH HOH . 
G 3 HOH B 11 174 19 HOH HOH . 
G 3 HOH B 12 175 21 HOH HOH . 
G 3 HOH B 13 176 22 HOH HOH . 
G 3 HOH B 14 177 23 HOH HOH . 
G 3 HOH B 15 178 24 HOH HOH . 
G 3 HOH B 16 179 25 HOH HOH . 
G 3 HOH B 17 180 26 HOH HOH . 
G 3 HOH B 18 181 28 HOH HOH . 
G 3 HOH B 19 182 30 HOH HOH . 
G 3 HOH B 20 183 31 HOH HOH . 
G 3 HOH B 21 184 34 HOH HOH . 
G 3 HOH B 22 185 35 HOH HOH . 
G 3 HOH B 23 186 36 HOH HOH . 
G 3 HOH B 24 187 38 HOH HOH . 
G 3 HOH B 25 188 42 HOH HOH . 
G 3 HOH B 26 189 46 HOH HOH . 
G 3 HOH B 27 190 48 HOH HOH . 
G 3 HOH B 28 191 49 HOH HOH . 
G 3 HOH B 29 192 50 HOH HOH . 
G 3 HOH B 30 193 51 HOH HOH . 
G 3 HOH B 31 194 52 HOH HOH . 
G 3 HOH B 32 195 53 HOH HOH . 
G 3 HOH B 33 196 54 HOH HOH . 
G 3 HOH B 34 197 55 HOH HOH . 
G 3 HOH B 35 198 56 HOH HOH . 
G 3 HOH B 36 199 57 HOH HOH . 
G 3 HOH B 37 200 59 HOH HOH . 
G 3 HOH B 38 201 61 HOH HOH . 
G 3 HOH B 39 202 62 HOH HOH . 
G 3 HOH B 40 203 65 HOH HOH . 
G 3 HOH B 41 204 66 HOH HOH . 
G 3 HOH B 42 205 67 HOH HOH . 
G 3 HOH B 43 206 68 HOH HOH . 
G 3 HOH B 44 207 71 HOH HOH . 
G 3 HOH B 45 208 73 HOH HOH . 
G 3 HOH B 46 209 74 HOH HOH . 
G 3 HOH B 47 210 75 HOH HOH . 
G 3 HOH B 48 211 76 HOH HOH . 
G 3 HOH B 49 212 77 HOH HOH . 
G 3 HOH B 50 213 78 HOH HOH . 
G 3 HOH B 51 214 80 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PO4 . . . C 2 21.85 -2.476 11.869 1 31.36 ? P PO4 163 A 1 
HETATM 2 O O1 PO4 . . . C 2 23.334 -2.384 12.151 1 27 ? O1 PO4 163 A 1 
HETATM 3 O O2 PO4 . . . C 2 21.12 -1.448 12.684 1 28.32 ? O2 PO4 163 A 1 
HETATM 4 O O3 PO4 . . . C 2 21.624 -2.224 10.4 1 34.79 ? O3 PO4 163 A 1 
HETATM 5 O O4 PO4 . . . C 2 21.33 -3.842 12.225 1 26.67 ? O4 PO4 163 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           5 
#