data_1VE7 # _model_server_result.job_id mTtGNx4rs6afuPAvvKz9iA _model_server_result.datetime_utc '2024-11-16 16:38:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ve7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 1VE7 # _exptl.entry_id 1VE7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 219.089 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-NITROPHENYL PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VE7 _cell.length_a 63.883 _cell.length_b 104.622 _cell.length_c 168.004 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VE7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,F 1 1 B,E,G 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 416 A CYS 416 1_555 A SG CYS 453 A CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? disulf ? disulf2 B SG CYS 416 B CYS 416 1_555 B SG CYS 453 B CYS 453 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? # _chem_comp.formula 'C6 H6 N O6 P' _chem_comp.formula_weight 219.089 _chem_comp.id 4NP _chem_comp.mon_nstd_flag . _chem_comp.name '4-NITROPHENYL PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1 4NP sing 1 n n P O2 4NP doub 2 n n P O3 4NP sing 3 n n P O4 4NP sing 4 n n O1 C1 4NP sing 5 n n O3 HO3 4NP sing 6 n n O4 HO4 4NP sing 7 n n C1 C2 4NP doub 8 n y C1 C6 4NP sing 9 n y C2 C3 4NP sing 10 n y C2 H21 4NP sing 11 n n C3 C4 4NP doub 12 n y C3 H31 4NP sing 13 n n C4 C5 4NP sing 14 n y C4 N 4NP sing 15 n n C5 C6 4NP doub 16 n y C5 H51 4NP sing 17 n n C6 H61 4NP sing 18 n n N O5 4NP sing 19 n n N O6 4NP doub 20 n n # _atom_sites.entry_id 1VE7 _atom_sites.fract_transf_matrix[1][1] 0.015654 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009558 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005952 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 4NP A 1 701 701 4NP PNP . D 3 GOL A 1 751 751 GOL GOL . E 2 4NP B 1 1701 701 4NP PNP . F 4 HOH A 1 752 1 HOH WAT . F 4 HOH A 2 753 5 HOH WAT . F 4 HOH A 3 754 6 HOH WAT . F 4 HOH A 4 755 7 HOH WAT . F 4 HOH A 5 756 9 HOH WAT . F 4 HOH A 6 757 11 HOH WAT . F 4 HOH A 7 758 12 HOH WAT . F 4 HOH A 8 759 13 HOH WAT . F 4 HOH A 9 760 14 HOH WAT . F 4 HOH A 10 761 15 HOH WAT . F 4 HOH A 11 762 16 HOH WAT . F 4 HOH A 12 763 17 HOH WAT . F 4 HOH A 13 764 19 HOH WAT . F 4 HOH A 14 765 20 HOH WAT . F 4 HOH A 15 766 21 HOH WAT . F 4 HOH A 16 767 23 HOH WAT . F 4 HOH A 17 768 24 HOH WAT . F 4 HOH A 18 769 27 HOH WAT . F 4 HOH A 19 770 28 HOH WAT . F 4 HOH A 20 771 30 HOH WAT . F 4 HOH A 21 772 31 HOH WAT . F 4 HOH A 22 773 34 HOH WAT . F 4 HOH A 23 774 37 HOH WAT . F 4 HOH A 24 775 38 HOH WAT . F 4 HOH A 25 776 40 HOH WAT . F 4 HOH A 26 777 43 HOH WAT . F 4 HOH A 27 778 49 HOH WAT . F 4 HOH A 28 779 51 HOH WAT . F 4 HOH A 29 780 53 HOH WAT . F 4 HOH A 30 781 54 HOH WAT . F 4 HOH A 31 782 55 HOH WAT . F 4 HOH A 32 783 56 HOH WAT . F 4 HOH A 33 784 57 HOH WAT . F 4 HOH A 34 785 59 HOH WAT . F 4 HOH A 35 786 61 HOH WAT . F 4 HOH A 36 787 62 HOH WAT . F 4 HOH A 37 788 63 HOH WAT . F 4 HOH A 38 789 65 HOH WAT . F 4 HOH A 39 790 66 HOH WAT . F 4 HOH A 40 791 67 HOH WAT . F 4 HOH A 41 792 68 HOH WAT . F 4 HOH A 42 793 69 HOH WAT . F 4 HOH A 43 794 71 HOH WAT . F 4 HOH A 44 795 73 HOH WAT . F 4 HOH A 45 796 74 HOH WAT . F 4 HOH A 46 797 78 HOH WAT . F 4 HOH A 47 798 80 HOH WAT . F 4 HOH A 48 799 82 HOH WAT . F 4 HOH A 49 800 86 HOH WAT . F 4 HOH A 50 801 88 HOH WAT . F 4 HOH A 51 802 90 HOH WAT . F 4 HOH A 52 803 91 HOH WAT . F 4 HOH A 53 804 93 HOH WAT . F 4 HOH A 54 805 95 HOH WAT . F 4 HOH A 55 806 96 HOH WAT . F 4 HOH A 56 807 97 HOH WAT . F 4 HOH A 57 808 98 HOH WAT . F 4 HOH A 58 809 99 HOH WAT . F 4 HOH A 59 810 102 HOH WAT . F 4 HOH A 60 811 103 HOH WAT . F 4 HOH A 61 812 105 HOH WAT . F 4 HOH A 62 813 108 HOH WAT . F 4 HOH A 63 814 109 HOH WAT . F 4 HOH A 64 815 111 HOH WAT . F 4 HOH A 65 816 112 HOH WAT . F 4 HOH A 66 817 114 HOH WAT . F 4 HOH A 67 818 119 HOH WAT . F 4 HOH A 68 819 120 HOH WAT . F 4 HOH A 69 820 121 HOH WAT . F 4 HOH A 70 821 129 HOH WAT . F 4 HOH A 71 822 134 HOH WAT . F 4 HOH A 72 823 137 HOH WAT . F 4 HOH A 73 824 139 HOH WAT . F 4 HOH A 74 825 140 HOH WAT . F 4 HOH A 75 826 145 HOH WAT . F 4 HOH A 76 827 147 HOH WAT . F 4 HOH A 77 828 151 HOH WAT . F 4 HOH A 78 829 152 HOH WAT . F 4 HOH A 79 830 154 HOH WAT . F 4 HOH A 80 831 156 HOH WAT . F 4 HOH A 81 832 160 HOH WAT . F 4 HOH A 82 833 162 HOH WAT . F 4 HOH A 83 834 163 HOH WAT . F 4 HOH A 84 835 164 HOH WAT . F 4 HOH A 85 836 165 HOH WAT . F 4 HOH A 86 837 166 HOH WAT . F 4 HOH A 87 838 167 HOH WAT . F 4 HOH A 88 839 168 HOH WAT . F 4 HOH A 89 840 170 HOH WAT . F 4 HOH A 90 841 178 HOH WAT . F 4 HOH A 91 842 179 HOH WAT . F 4 HOH A 92 843 180 HOH WAT . F 4 HOH A 93 844 181 HOH WAT . F 4 HOH A 94 845 184 HOH WAT . F 4 HOH A 95 846 187 HOH WAT . F 4 HOH A 96 847 188 HOH WAT . F 4 HOH A 97 848 191 HOH WAT . F 4 HOH A 98 849 194 HOH WAT . F 4 HOH A 99 850 195 HOH WAT . F 4 HOH A 100 851 198 HOH WAT . F 4 HOH A 101 852 200 HOH WAT . F 4 HOH A 102 853 202 HOH WAT . F 4 HOH A 103 854 211 HOH WAT . F 4 HOH A 104 855 214 HOH WAT . F 4 HOH A 105 856 215 HOH WAT . F 4 HOH A 106 857 216 HOH WAT . F 4 HOH A 107 858 220 HOH WAT . G 4 HOH B 1 1702 2 HOH WAT . G 4 HOH B 2 1703 3 HOH WAT . G 4 HOH B 3 1704 4 HOH WAT . G 4 HOH B 4 1705 8 HOH WAT . G 4 HOH B 5 1706 10 HOH WAT . G 4 HOH B 6 1707 18 HOH WAT . G 4 HOH B 7 1708 22 HOH WAT . G 4 HOH B 8 1709 25 HOH WAT . G 4 HOH B 9 1710 26 HOH WAT . G 4 HOH B 10 1711 29 HOH WAT . G 4 HOH B 11 1712 32 HOH WAT . G 4 HOH B 12 1713 33 HOH WAT . G 4 HOH B 13 1714 36 HOH WAT . G 4 HOH B 14 1715 39 HOH WAT . G 4 HOH B 15 1716 42 HOH WAT . G 4 HOH B 16 1717 45 HOH WAT . G 4 HOH B 17 1718 46 HOH WAT . G 4 HOH B 18 1719 47 HOH WAT . G 4 HOH B 19 1720 48 HOH WAT . G 4 HOH B 20 1721 50 HOH WAT . G 4 HOH B 21 1722 52 HOH WAT . G 4 HOH B 22 1723 58 HOH WAT . G 4 HOH B 23 1724 64 HOH WAT . G 4 HOH B 24 1725 70 HOH WAT . G 4 HOH B 25 1726 77 HOH WAT . G 4 HOH B 26 1727 79 HOH WAT . G 4 HOH B 27 1728 81 HOH WAT . G 4 HOH B 28 1729 84 HOH WAT . G 4 HOH B 29 1730 85 HOH WAT . G 4 HOH B 30 1731 87 HOH WAT . G 4 HOH B 31 1732 89 HOH WAT . G 4 HOH B 32 1733 94 HOH WAT . G 4 HOH B 33 1734 104 HOH WAT . G 4 HOH B 34 1735 106 HOH WAT . G 4 HOH B 35 1736 110 HOH WAT . G 4 HOH B 36 1737 113 HOH WAT . G 4 HOH B 37 1738 115 HOH WAT . G 4 HOH B 38 1739 116 HOH WAT . G 4 HOH B 39 1740 117 HOH WAT . G 4 HOH B 40 1741 118 HOH WAT . G 4 HOH B 41 1742 122 HOH WAT . G 4 HOH B 42 1743 123 HOH WAT . G 4 HOH B 43 1744 124 HOH WAT . G 4 HOH B 44 1745 127 HOH WAT . G 4 HOH B 45 1746 130 HOH WAT . G 4 HOH B 46 1747 131 HOH WAT . G 4 HOH B 47 1748 132 HOH WAT . G 4 HOH B 48 1749 133 HOH WAT . G 4 HOH B 49 1750 135 HOH WAT . G 4 HOH B 50 1751 136 HOH WAT . G 4 HOH B 51 1752 138 HOH WAT . G 4 HOH B 52 1753 142 HOH WAT . G 4 HOH B 53 1754 143 HOH WAT . G 4 HOH B 54 1755 144 HOH WAT . G 4 HOH B 55 1756 146 HOH WAT . G 4 HOH B 56 1757 150 HOH WAT . G 4 HOH B 57 1758 153 HOH WAT . G 4 HOH B 58 1759 157 HOH WAT . G 4 HOH B 59 1760 158 HOH WAT . G 4 HOH B 60 1761 159 HOH WAT . G 4 HOH B 61 1762 161 HOH WAT . G 4 HOH B 62 1763 172 HOH WAT . G 4 HOH B 63 1764 174 HOH WAT . G 4 HOH B 64 1765 175 HOH WAT . G 4 HOH B 65 1766 177 HOH WAT . G 4 HOH B 66 1767 182 HOH WAT . G 4 HOH B 67 1768 183 HOH WAT . G 4 HOH B 68 1769 186 HOH WAT . G 4 HOH B 69 1770 193 HOH WAT . G 4 HOH B 70 1771 196 HOH WAT . G 4 HOH B 71 1772 199 HOH WAT . G 4 HOH B 72 1773 203 HOH WAT . G 4 HOH B 73 1774 205 HOH WAT . G 4 HOH B 74 1775 208 HOH WAT . G 4 HOH B 75 1776 213 HOH WAT . G 4 HOH B 76 1777 217 HOH WAT . G 4 HOH B 77 1778 218 HOH WAT . G 4 HOH B 78 1779 219 HOH WAT . G 4 HOH B 79 1780 221 HOH WAT . G 4 HOH B 80 1781 222 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P 4NP . . . C 2 31.904 127.007 24.086 1 74.1 ? P 4NP 701 A 1 HETATM 2 O O1 4NP . . . C 2 31.376 125.779 24.956 1 72.35 ? O1 4NP 701 A 1 HETATM 3 O O2 4NP . . . C 2 30.716 127.57 23.659 1 73.41 ? O2 4NP 701 A 1 HETATM 4 O O3 4NP . . . C 2 32.569 126.52 22.945 1 73.41 ? O3 4NP 701 A 1 HETATM 5 O O4 4NP . . . C 2 32.88 127.972 25.028 1 74.84 ? O4 4NP 701 A 1 HETATM 6 C C1 4NP . . . C 2 30.67 125.866 26.166 1 70.87 ? C1 4NP 701 A 1 HETATM 7 C C2 4NP . . . C 2 29.295 126.178 26.143 1 70.55 ? C2 4NP 701 A 1 HETATM 8 C C3 4NP . . . C 2 28.54 126.284 27.315 1 70.79 ? C3 4NP 701 A 1 HETATM 9 C C4 4NP . . . C 2 29.183 126.087 28.561 1 72.22 ? C4 4NP 701 A 1 HETATM 10 C C5 4NP . . . C 2 30.566 125.764 28.605 1 70.77 ? C5 4NP 701 A 1 HETATM 11 C C6 4NP . . . C 2 31.323 125.66 27.416 1 70.5 ? C6 4NP 701 A 1 HETATM 12 N N 4NP . . . C 2 28.456 126.19 29.774 1 74.1 ? N 4NP 701 A 1 HETATM 13 O O5 4NP . . . C 2 27.291 126.466 29.712 1 75.63 ? O5 4NP 701 A 1 HETATM 14 O O6 4NP . . . C 2 28.971 126.028 30.756 1 74.72 ? O6 4NP 701 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 55 _model_server_stats.query_time_ms 332 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 14 #