data_1VE9 # _model_server_result.job_id Z2ln7BzZnswmLqCJk95NYw _model_server_result.datetime_utc '2024-11-28 20:14:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1ve9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":352}' # _entry.id 1VE9 # _exptl.entry_id 1VE9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.121 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'BENZOIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VE9 _cell.length_a 110.3 _cell.length_b 92.9 _cell.length_c 71.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VE9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # _chem_comp.formula 'C7 H6 O2' _chem_comp.formula_weight 122.121 _chem_comp.id BEZ _chem_comp.mon_nstd_flag . _chem_comp.name 'BENZOIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 BEZ doub 70 n n C O2 BEZ sing 71 n n C C1 BEZ sing 72 n n O2 HO2 BEZ sing 73 n n C1 C2 BEZ doub 74 n y C1 C6 BEZ sing 75 n y C2 C3 BEZ sing 76 n y C2 H2 BEZ sing 77 n n C3 C4 BEZ doub 78 n y C3 H3 BEZ sing 79 n n C4 C5 BEZ sing 80 n y C4 H4 BEZ sing 81 n n C5 C6 BEZ doub 82 n y C5 H5 BEZ sing 83 n n C6 H6 BEZ sing 84 n n # _atom_sites.entry_id 1VE9 _atom_sites.fract_transf_matrix[1][1] 0.009066 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010764 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013966 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 FAD A 1 351 351 FAD FAD . D 3 BEZ A 1 352 352 BEZ BZA . E 2 FAD B 1 1351 351 FAD FAD . F 3 BEZ B 1 1352 352 BEZ BZA . G 4 HOH A 1 802 802 HOH HOH . G 4 HOH A 2 803 803 HOH HOH . G 4 HOH A 3 806 806 HOH HOH . G 4 HOH A 4 808 808 HOH HOH . G 4 HOH A 5 810 810 HOH HOH . G 4 HOH A 6 811 811 HOH HOH . G 4 HOH A 7 814 814 HOH HOH . G 4 HOH A 8 815 815 HOH HOH . G 4 HOH A 9 817 817 HOH HOH . G 4 HOH A 10 819 819 HOH HOH . G 4 HOH A 11 825 825 HOH HOH . G 4 HOH A 12 826 826 HOH HOH . G 4 HOH A 13 827 827 HOH HOH . G 4 HOH A 14 828 828 HOH HOH . G 4 HOH A 15 832 832 HOH HOH . G 4 HOH A 16 833 833 HOH HOH . G 4 HOH A 17 838 838 HOH HOH . G 4 HOH A 18 841 841 HOH HOH . G 4 HOH A 19 842 842 HOH HOH . G 4 HOH A 20 843 843 HOH HOH . G 4 HOH A 21 844 844 HOH HOH . G 4 HOH A 22 845 845 HOH HOH . G 4 HOH A 23 846 846 HOH HOH . G 4 HOH A 24 847 847 HOH HOH . G 4 HOH A 25 850 850 HOH HOH . G 4 HOH A 26 851 851 HOH HOH . G 4 HOH A 27 852 852 HOH HOH . G 4 HOH A 28 856 856 HOH HOH . G 4 HOH A 29 857 857 HOH HOH . G 4 HOH A 30 858 858 HOH HOH . G 4 HOH A 31 862 862 HOH HOH . G 4 HOH A 32 865 865 HOH HOH . G 4 HOH A 33 869 869 HOH HOH . G 4 HOH A 34 873 873 HOH HOH . G 4 HOH A 35 875 875 HOH HOH . G 4 HOH A 36 877 877 HOH HOH . G 4 HOH A 37 878 878 HOH HOH . G 4 HOH A 38 879 879 HOH HOH . G 4 HOH A 39 880 880 HOH HOH . G 4 HOH A 40 881 881 HOH HOH . G 4 HOH A 41 884 884 HOH HOH . G 4 HOH A 42 888 888 HOH HOH . G 4 HOH A 43 893 893 HOH HOH . G 4 HOH A 44 898 898 HOH HOH . G 4 HOH A 45 899 899 HOH HOH . G 4 HOH A 46 900 900 HOH HOH . G 4 HOH A 47 901 901 HOH HOH . G 4 HOH A 48 903 903 HOH HOH . G 4 HOH A 49 904 904 HOH HOH . G 4 HOH A 50 905 905 HOH HOH . G 4 HOH A 51 910 910 HOH HOH . G 4 HOH A 52 912 912 HOH HOH . G 4 HOH A 53 913 913 HOH HOH . G 4 HOH A 54 914 914 HOH HOH . G 4 HOH A 55 916 916 HOH HOH . G 4 HOH A 56 921 921 HOH HOH . G 4 HOH A 57 922 922 HOH HOH . G 4 HOH A 58 924 924 HOH HOH . G 4 HOH A 59 925 925 HOH HOH . G 4 HOH A 60 928 928 HOH HOH . G 4 HOH A 61 929 929 HOH HOH . G 4 HOH A 62 932 932 HOH HOH . G 4 HOH A 63 933 933 HOH HOH . G 4 HOH A 64 935 935 HOH HOH . G 4 HOH A 65 936 936 HOH HOH . G 4 HOH A 66 937 937 HOH HOH . G 4 HOH A 67 938 938 HOH HOH . G 4 HOH A 68 941 941 HOH HOH . G 4 HOH A 69 943 943 HOH HOH . G 4 HOH A 70 944 944 HOH HOH . G 4 HOH A 71 950 950 HOH HOH . H 4 HOH B 1 801 801 HOH HOH . H 4 HOH B 2 804 804 HOH HOH . H 4 HOH B 3 805 805 HOH HOH . H 4 HOH B 4 807 807 HOH HOH . H 4 HOH B 5 809 809 HOH HOH . H 4 HOH B 6 812 812 HOH HOH . H 4 HOH B 7 813 813 HOH HOH . H 4 HOH B 8 816 816 HOH HOH . H 4 HOH B 9 818 818 HOH HOH . H 4 HOH B 10 820 820 HOH HOH . H 4 HOH B 11 821 821 HOH HOH . H 4 HOH B 12 822 822 HOH HOH . H 4 HOH B 13 823 823 HOH HOH . H 4 HOH B 14 824 824 HOH HOH . H 4 HOH B 15 829 829 HOH HOH . H 4 HOH B 16 830 830 HOH HOH . H 4 HOH B 17 831 831 HOH HOH . H 4 HOH B 18 834 834 HOH HOH . H 4 HOH B 19 835 835 HOH HOH . H 4 HOH B 20 836 836 HOH HOH . H 4 HOH B 21 837 837 HOH HOH . H 4 HOH B 22 839 839 HOH HOH . H 4 HOH B 23 840 840 HOH HOH . H 4 HOH B 24 848 848 HOH HOH . H 4 HOH B 25 849 849 HOH HOH . H 4 HOH B 26 853 853 HOH HOH . H 4 HOH B 27 854 854 HOH HOH . H 4 HOH B 28 855 855 HOH HOH . H 4 HOH B 29 859 859 HOH HOH . H 4 HOH B 30 860 860 HOH HOH . H 4 HOH B 31 861 861 HOH HOH . H 4 HOH B 32 863 863 HOH HOH . H 4 HOH B 33 864 864 HOH HOH . H 4 HOH B 34 866 866 HOH HOH . H 4 HOH B 35 867 867 HOH HOH . H 4 HOH B 36 868 868 HOH HOH . H 4 HOH B 37 870 870 HOH HOH . H 4 HOH B 38 871 871 HOH HOH . H 4 HOH B 39 872 872 HOH HOH . H 4 HOH B 40 874 874 HOH HOH . H 4 HOH B 41 876 876 HOH HOH . H 4 HOH B 42 882 882 HOH HOH . H 4 HOH B 43 883 883 HOH HOH . H 4 HOH B 44 885 885 HOH HOH . H 4 HOH B 45 886 886 HOH HOH . H 4 HOH B 46 887 887 HOH HOH . H 4 HOH B 47 889 889 HOH HOH . H 4 HOH B 48 890 890 HOH HOH . H 4 HOH B 49 891 891 HOH HOH . H 4 HOH B 50 892 892 HOH HOH . H 4 HOH B 51 894 894 HOH HOH . H 4 HOH B 52 895 895 HOH HOH . H 4 HOH B 53 896 896 HOH HOH . H 4 HOH B 54 897 897 HOH HOH . H 4 HOH B 55 902 902 HOH HOH . H 4 HOH B 56 906 906 HOH HOH . H 4 HOH B 57 907 907 HOH HOH . H 4 HOH B 58 908 908 HOH HOH . H 4 HOH B 59 909 909 HOH HOH . H 4 HOH B 60 911 911 HOH HOH . H 4 HOH B 61 915 915 HOH HOH . H 4 HOH B 62 917 917 HOH HOH . H 4 HOH B 63 918 918 HOH HOH . H 4 HOH B 64 919 919 HOH HOH . H 4 HOH B 65 920 920 HOH HOH . H 4 HOH B 66 923 923 HOH HOH . H 4 HOH B 67 926 926 HOH HOH . H 4 HOH B 68 927 927 HOH HOH . H 4 HOH B 69 930 930 HOH HOH . H 4 HOH B 70 931 931 HOH HOH . H 4 HOH B 71 934 934 HOH HOH . H 4 HOH B 72 939 939 HOH HOH . H 4 HOH B 73 940 940 HOH HOH . H 4 HOH B 74 942 942 HOH HOH . H 4 HOH B 75 945 945 HOH HOH . H 4 HOH B 76 946 946 HOH HOH . H 4 HOH B 77 947 947 HOH HOH . H 4 HOH B 78 948 948 HOH HOH . H 4 HOH B 79 949 949 HOH HOH . H 4 HOH B 80 951 951 HOH HOH . H 4 HOH B 81 952 952 HOH HOH . H 4 HOH B 82 953 953 HOH HOH . H 4 HOH B 83 954 954 HOH HOH . H 4 HOH B 84 955 955 HOH HOH . H 4 HOH B 85 956 956 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C BEZ . . . D 3 36.946 75.967 66.443 1 47.65 ? C BEZ 352 A 1 HETATM 2 O O1 BEZ . . . D 3 38.074 75.967 66.998 1 44.93 ? O1 BEZ 352 A 1 HETATM 3 O O2 BEZ . . . D 3 36.427 76.968 65.894 1 46.19 ? O2 BEZ 352 A 1 HETATM 4 C C1 BEZ . . . D 3 36.188 74.709 66.374 1 50.22 ? C1 BEZ 352 A 1 HETATM 5 C C2 BEZ . . . D 3 36.676 73.536 66.984 1 50.95 ? C2 BEZ 352 A 1 HETATM 6 C C3 BEZ . . . D 3 35.932 72.353 66.898 1 52.69 ? C3 BEZ 352 A 1 HETATM 7 C C4 BEZ . . . D 3 34.688 72.322 66.2 1 53.59 ? C4 BEZ 352 A 1 HETATM 8 C C5 BEZ . . . D 3 34.188 73.489 65.585 1 53.12 ? C5 BEZ 352 A 1 HETATM 9 C C6 BEZ . . . D 3 34.917 74.682 65.66 1 51.93 ? C6 BEZ 352 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 290 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 9 #