data_1VEA # _model_server_result.job_id 2YxPVEZI4QwNsPo_f25Z8g _model_server_result.datetime_utc '2025-09-04 19:14:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vea # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1001}' # _entry.id 1VEA # _exptl.entry_id 1VEA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 280.324 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-NAPHTHYL)HISTIDINAMIDE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VEA _cell.length_a 95.41 _cell.length_b 95.41 _cell.length_c 95.41 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VEA _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_445 z-1/2,-x-1/2,-y 0 0 1 -1 0 0 0 -1 0 -47.705 -47.705 0 3 'crystal symmetry operation' 12_455 -y-1/2,-z,x+1/2 0 -1 0 0 0 -1 1 0 0 -47.705 0 47.705 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C16 H16 N4 O' _chem_comp.formula_weight 280.324 _chem_comp.id HBN _chem_comp.mon_nstd_flag n _chem_comp.name N-(2-NAPHTHYL)HISTIDINAMIDE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms 'L-HISTIDINE BETA NAPHTHYLAMIDE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 HBN doub 129 n y C1 C8A HBN sing 130 n y C1 H1 HBN sing 131 n n C2 C3 HBN sing 132 n y C2 HC2 HBN sing 133 n n C3 C4 HBN doub 134 n y C3 H3 HBN sing 135 n n C4 C4A HBN sing 136 n y C4 H4 HBN sing 137 n n C4A C8A HBN sing 138 n y C4A C5 HBN doub 139 n y C8A C8 HBN doub 140 n y C8 C7 HBN sing 141 n y C8 H8 HBN sing 142 n n C7 C6 HBN doub 143 n y C7 N1 HBN sing 144 n n C6 C5 HBN sing 145 n y C6 H6 HBN sing 146 n n C5 H5 HBN sing 147 n n N1 C HBN sing 148 n n N1 HN1 HBN sing 149 n n N CA HBN sing 150 n n N H HBN sing 151 n n N H2 HBN sing 152 n n CA C HBN sing 153 n n CA CB HBN sing 154 n n CA HA HBN sing 155 n n C O HBN doub 156 n n CB CG HBN sing 157 n n CB HB2 HBN sing 158 n n CB HB3 HBN sing 159 n n CG ND1 HBN sing 160 n y CG CD2 HBN doub 161 n y ND1 CE1 HBN sing 162 n y ND1 HD1 HBN sing 163 n n CD2 NE2 HBN sing 164 n y CD2 HD2 HBN sing 165 n n CE1 NE2 HBN doub 166 n y CE1 HE1 HBN sing 167 n n # _atom_sites.entry_id 1VEA _atom_sites.fract_transf_matrix[1][1] 0.010481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HBN B 1 1001 1001 HBN HBN . D 3 HOH A 1 149 3 HOH HOH . D 3 HOH A 2 150 4 HOH HOH . D 3 HOH A 3 151 5 HOH HOH . D 3 HOH A 4 152 6 HOH HOH . D 3 HOH A 5 153 7 HOH HOH . D 3 HOH A 6 154 9 HOH HOH . D 3 HOH A 7 155 10 HOH HOH . D 3 HOH A 8 156 12 HOH HOH . D 3 HOH A 9 157 13 HOH HOH . D 3 HOH A 10 158 15 HOH HOH . D 3 HOH A 11 159 17 HOH HOH . D 3 HOH A 12 160 18 HOH HOH . D 3 HOH A 13 161 19 HOH HOH . D 3 HOH A 14 162 20 HOH HOH . D 3 HOH A 15 163 21 HOH HOH . D 3 HOH A 16 164 24 HOH HOH . D 3 HOH A 17 165 25 HOH HOH . D 3 HOH A 18 166 26 HOH HOH . D 3 HOH A 19 167 27 HOH HOH . D 3 HOH A 20 168 28 HOH HOH . D 3 HOH A 21 169 30 HOH HOH . D 3 HOH A 22 170 34 HOH HOH . D 3 HOH A 23 171 35 HOH HOH . D 3 HOH A 24 172 36 HOH HOH . D 3 HOH A 25 173 39 HOH HOH . D 3 HOH A 26 174 40 HOH HOH . D 3 HOH A 27 175 46 HOH HOH . D 3 HOH A 28 176 49 HOH HOH . D 3 HOH A 29 177 53 HOH HOH . D 3 HOH A 30 178 55 HOH HOH . D 3 HOH A 31 179 56 HOH HOH . D 3 HOH A 32 180 57 HOH HOH . D 3 HOH A 33 181 62 HOH HOH . D 3 HOH A 34 182 64 HOH HOH . D 3 HOH A 35 183 65 HOH HOH . D 3 HOH A 36 184 67 HOH HOH . D 3 HOH A 37 185 69 HOH HOH . D 3 HOH A 38 186 72 HOH HOH . D 3 HOH A 39 187 83 HOH HOH . E 3 HOH B 1 1002 1 HOH HOH . E 3 HOH B 2 1003 2 HOH HOH . E 3 HOH B 3 1004 8 HOH HOH . E 3 HOH B 4 1005 14 HOH HOH . E 3 HOH B 5 1006 16 HOH HOH . E 3 HOH B 6 1007 22 HOH HOH . E 3 HOH B 7 1008 23 HOH HOH . E 3 HOH B 8 1009 29 HOH HOH . E 3 HOH B 9 1010 31 HOH HOH . E 3 HOH B 10 1011 32 HOH HOH . E 3 HOH B 11 1012 37 HOH HOH . E 3 HOH B 12 1013 38 HOH HOH . E 3 HOH B 13 1014 41 HOH HOH . E 3 HOH B 14 1015 42 HOH HOH . E 3 HOH B 15 1016 43 HOH HOH . E 3 HOH B 16 1017 44 HOH HOH . E 3 HOH B 17 1018 45 HOH HOH . E 3 HOH B 18 1019 47 HOH HOH . E 3 HOH B 19 1020 48 HOH HOH . E 3 HOH B 20 1021 50 HOH HOH . E 3 HOH B 21 1022 51 HOH HOH . E 3 HOH B 22 1023 52 HOH HOH . E 3 HOH B 23 1024 54 HOH HOH . E 3 HOH B 24 1025 58 HOH HOH . E 3 HOH B 25 1026 59 HOH HOH . E 3 HOH B 26 1027 60 HOH HOH . E 3 HOH B 27 1028 61 HOH HOH . E 3 HOH B 28 1029 63 HOH HOH . E 3 HOH B 29 1030 66 HOH HOH . E 3 HOH B 30 1031 68 HOH HOH . E 3 HOH B 31 1032 70 HOH HOH . E 3 HOH B 32 1033 71 HOH HOH . E 3 HOH B 33 1034 73 HOH HOH . E 3 HOH B 34 1035 74 HOH HOH . E 3 HOH B 35 1036 75 HOH HOH . E 3 HOH B 36 1037 76 HOH HOH . E 3 HOH B 37 1038 77 HOH HOH . E 3 HOH B 38 1039 78 HOH HOH . E 3 HOH B 39 1040 79 HOH HOH . E 3 HOH B 40 1041 80 HOH HOH . E 3 HOH B 41 1042 81 HOH HOH . E 3 HOH B 42 1043 82 HOH HOH . E 3 HOH B 43 1044 84 HOH HOH . E 3 HOH B 44 1045 85 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 HBN . . . C 2 47.576 -104.154 85.841 0.5 73.45 ? C1 HBN 1001 B 1 HETATM 2 C C2 HBN . . . C 2 48.727 -103.337 85.821 0.5 73.81 ? C2 HBN 1001 B 1 HETATM 3 C C3 HBN . . . C 2 49.069 -102.549 86.954 0.5 74.39 ? C3 HBN 1001 B 1 HETATM 4 C C4 HBN . . . C 2 48.26 -102.568 88.127 0.5 74.38 ? C4 HBN 1001 B 1 HETATM 5 C C4A HBN . . . C 2 47.096 -103.381 88.177 0.5 73.53 ? C4A HBN 1001 B 1 HETATM 6 C C8A HBN . . . C 2 46.752 -104.193 86.996 0.5 73.32 ? C8A HBN 1001 B 1 HETATM 7 C C8 HBN . . . C 2 45.615 -104.993 87.038 0.5 73.45 ? C8 HBN 1001 B 1 HETATM 8 C C7 HBN . . . C 2 44.772 -105.054 88.183 0.5 73.47 ? C7 HBN 1001 B 1 HETATM 9 C C6 HBN . . . C 2 45.093 -104.269 89.334 0.5 72.87 ? C6 HBN 1001 B 1 HETATM 10 C C5 HBN . . . C 2 46.25 -103.434 89.332 0.5 73.8 ? C5 HBN 1001 B 1 HETATM 11 N N1 HBN . . . C 2 43.741 -105.813 88.169 0.5 74.56 ? N1 HBN 1001 B 1 HETATM 12 N N HBN . . . C 2 40.701 -107.819 89.132 0.5 72.65 ? N HBN 1001 B 1 HETATM 13 C CA HBN . . . C 2 41.884 -107.42 88.392 0.5 74.34 ? CA HBN 1001 B 1 HETATM 14 C C HBN . . . C 2 43.092 -106.767 89.046 0.5 74.11 ? C HBN 1001 B 1 HETATM 15 O O HBN . . . C 2 43.462 -107.092 90.156 0.5 74.8 ? O HBN 1001 B 1 HETATM 16 C CB HBN . . . C 2 42.038 -107.609 87.073 0.5 74.81 ? CB HBN 1001 B 1 HETATM 17 C CG HBN . . . C 2 41.244 -108.199 85.955 0.5 75.42 ? CG HBN 1001 B 1 HETATM 18 N ND1 HBN . . . C 2 41.672 -108.077 84.649 0.5 76.44 ? ND1 HBN 1001 B 1 HETATM 19 C CD2 HBN . . . C 2 40.06 -108.918 86.051 0.5 75.56 ? CD2 HBN 1001 B 1 HETATM 20 C CE1 HBN . . . C 2 40.673 -108.76 84.042 0.5 76.03 ? CE1 HBN 1001 B 1 HETATM 21 N NE2 HBN . . . C 2 39.659 -109.301 84.786 0.5 76.46 ? NE2 HBN 1001 B 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 323 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #