data_1VEB
#
_model_server_result.job_id            nU46jQLpxyM2UdfU-4OrwA 
_model_server_result.datetime_utc      '2025-01-18 06:34:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1veb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":351}' 
#
_entry.id    1VEB 
#
_exptl.entry_id    1VEB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              493.527 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (3R,4R)-N-{4-[4-(2-FLUORO-6-HYDROXY-3-METHOXY-BENZOYL)-BENZYLOXY]-AZEPAN-3-YL}-ISONICOTINAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VEB 
_cell.length_a            74.881 
_cell.length_b            76.51 
_cell.length_c            80.094 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VEB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C SEP 10 A SEP 10 1_555 A N GLU 11 A GLU 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale2 A C TRP 196 A TRP 196 1_555 A N TPO 197 A TPO 197 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale3 A C TPO 197 A TPO 197 1_555 A N LEU 198 A LEU 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? 
covale ? covale4 A C VAL 337 A VAL 337 1_555 A N SEP 338 A SEP 338 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? 
covale ? covale5 A C SEP 338 A SEP 338 1_555 A N ILE 339 A ILE 339 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
#
_chem_comp.formula           'C27 H28 F N3 O5' 
_chem_comp.formula_weight    493.527 
_chem_comp.id                I05 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (3R,4R)-N-{4-[4-(2-FLUORO-6-HYDROXY-3-METHOXY-BENZOYL)-BENZYLOXY]-AZEPAN-3-YL}-ISONICOTINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
F96 C76 I05 sing 150 n n 
C76 C75 I05 doub 151 n y 
C76 C71 I05 sing 152 n y 
C75 O95 I05 sing 153 n n 
C75 C74 I05 sing 154 n y 
O95 C97 I05 sing 155 n n 
C97 H971 I05 sing 156 n n 
C97 H972 I05 sing 157 n n 
C97 H973 I05 sing 158 n n 
C74 C73 I05 doub 159 n y 
C74 H74 I05 sing 160 n n 
C73 C72 I05 sing 161 n y 
C73 H73 I05 sing 162 n n 
C72 O92 I05 sing 163 n n 
C72 C71 I05 doub 164 n y 
O92 H92 I05 sing 165 n n 
C71 C61 I05 sing 166 n n 
C61 O62 I05 doub 167 n n 
C61 C54 I05 sing 168 n n 
C54 C55 I05 sing 169 n y 
C54 C53 I05 doub 170 n y 
C55 C56 I05 doub 171 n y 
C55 H55 I05 sing 172 n n 
C56 C51 I05 sing 173 n y 
C56 H56 I05 sing 174 n n 
C53 C52 I05 sing 175 n y 
C53 H53 I05 sing 176 n n 
C52 C51 I05 doub 177 n y 
C52 H52 I05 sing 178 n n 
C51 C42 I05 sing 179 n n 
C42 O41 I05 sing 180 n n 
C42 H421 I05 sing 181 n n 
C42 H422 I05 sing 182 n n 
O41 C37 I05 sing 183 n n 
C37 C36 I05 sing 184 n n 
C37 C31 I05 sing 185 n n 
C37 H37 I05 sing 186 n n 
C36 C35 I05 sing 187 n n 
C36 H361 I05 sing 188 n n 
C36 H362 I05 sing 189 n n 
C35 C34 I05 sing 190 n n 
C35 H351 I05 sing 191 n n 
C35 H352 I05 sing 192 n n 
C34 N33 I05 sing 193 n n 
C34 H341 I05 sing 194 n n 
C34 H342 I05 sing 195 n n 
N33 C32 I05 sing 196 n n 
N33 H33 I05 sing 197 n n 
C32 C31 I05 sing 198 n n 
C32 H321 I05 sing 199 n n 
C32 H322 I05 sing 200 n n 
C31 N23 I05 sing 201 n n 
C31 H31 I05 sing 202 n n 
N23 C21 I05 sing 203 n n 
N23 H23 I05 sing 204 n n 
C21 O22 I05 doub 205 n n 
C21 C14 I05 sing 206 n n 
C14 C13 I05 sing 207 n y 
C14 C15 I05 doub 208 n y 
C13 C12 I05 doub 209 n y 
C13 H13 I05 sing 210 n n 
C12 N11 I05 sing 211 n y 
C12 H12 I05 sing 212 n n 
N11 C16 I05 doub 213 n y 
C16 C15 I05 sing 214 n y 
C16 H16 I05 sing 215 n n 
C15 H15 I05 sing 216 n n 
#
_atom_sites.entry_id                     1VEB 
_atom_sites.fract_transf_matrix[1][1]    0.013354 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01307 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012485 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          C 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           I05 
_pdbx_nonpoly_scheme.pdb_strand_id    A 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      351 
_pdbx_nonpoly_scheme.auth_seq_num     351 
_pdbx_nonpoly_scheme.pdb_mon_id       I05 
_pdbx_nonpoly_scheme.auth_mon_id      I05 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 F F96 I05 . . . C 3 16.824 11.977 -3.302 1 35.01 ? F96 I05 351 A 1 
HETATM 2 C C76 I05 . . . C 3 15.853 11.729 -4.169 1 30.54 ? C76 I05 351 A 1 
HETATM 3 C C75 I05 . . . C 3 16.15 11.057 -5.314 1 30.55 ? C75 I05 351 A 1 
HETATM 4 O O95 I05 . . . C 3 17.469 10.71 -5.462 1 32.12 ? O95 I05 351 A 1 
HETATM 5 C C97 I05 . . . C 3 18.056 10.645 -6.756 1 33.76 ? C97 I05 351 A 1 
HETATM 6 C C74 I05 . . . C 3 15.136 10.791 -6.23 1 28.92 ? C74 I05 351 A 1 
HETATM 7 C C73 I05 . . . C 3 13.839 11.211 -5.947 1 28.92 ? C73 I05 351 A 1 
HETATM 8 C C72 I05 . . . C 3 13.557 11.893 -4.748 1 30.1 ? C72 I05 351 A 1 
HETATM 9 O O92 I05 . . . C 3 12.311 12.292 -4.47 1 30.12 ? O92 I05 351 A 1 
HETATM 10 C C71 I05 . . . C 3 14.596 12.143 -3.854 1 29.45 ? C71 I05 351 A 1 
HETATM 11 C C61 I05 . . . C 3 14.543 12.89 -2.559 1 27.41 ? C61 I05 351 A 1 
HETATM 12 O O62 I05 . . . C 3 15.252 13.879 -2.484 1 25.15 ? O62 I05 351 A 1 
HETATM 13 C C54 I05 . . . C 3 13.803 12.501 -1.347 1 27.57 ? C54 I05 351 A 1 
HETATM 14 C C55 I05 . . . C 3 13.501 11.189 -1.102 1 29.75 ? C55 I05 351 A 1 
HETATM 15 C C56 I05 . . . C 3 12.831 10.832 0.081 1 31.63 ? C56 I05 351 A 1 
HETATM 16 C C53 I05 . . . C 3 13.468 13.467 -0.418 1 28.84 ? C53 I05 351 A 1 
HETATM 17 C C52 I05 . . . C 3 12.801 13.111 0.752 1 30.17 ? C52 I05 351 A 1 
HETATM 18 C C51 I05 . . . C 3 12.468 11.782 1.027 1 30.65 ? C51 I05 351 A 1 
HETATM 19 C C42 I05 . . . C 3 11.744 11.402 2.316 1 30.52 ? C42 I05 351 A 1 
HETATM 20 O O41 I05 . . . C 3 11.154 10.124 2.215 1 31.38 ? O41 I05 351 A 1 
HETATM 21 C C37 I05 . . . C 3 10.481 9.631 3.364 1 32.39 ? C37 I05 351 A 1 
HETATM 22 C C36 I05 . . . C 3 11.512 9.152 4.361 1 32.3 ? C36 I05 351 A 1 
HETATM 23 C C35 I05 . . . C 3 12.682 8.387 3.77 1 31.98 ? C35 I05 351 A 1 
HETATM 24 C C34 I05 . . . C 3 12.373 6.923 3.602 1 32.38 ? C34 I05 351 A 1 
HETATM 25 N N33 I05 . . . C 3 11.248 6.747 2.722 1 32.58 ? N33 I05 351 A 1 
HETATM 26 C C32 I05 . . . C 3 9.962 7.079 3.288 1 34.04 ? C32 I05 351 A 1 
HETATM 27 C C31 I05 . . . C 3 9.522 8.509 2.942 1 34.61 ? C31 I05 351 A 1 
HETATM 28 N N23 I05 . . . C 3 8.178 8.721 3.478 1 35.93 ? N23 I05 351 A 1 
HETATM 29 C C21 I05 . . . C 3 7.159 8.987 2.659 1 37.07 ? C21 I05 351 A 1 
HETATM 30 O O22 I05 . . . C 3 7.367 9.161 1.462 1 38.76 ? O22 I05 351 A 1 
HETATM 31 C C14 I05 . . . C 3 5.74 9.083 3.18 1 37.88 ? C14 I05 351 A 1 
HETATM 32 C C13 I05 . . . C 3 4.672 9.263 2.301 1 36.96 ? C13 I05 351 A 1 
HETATM 33 C C12 I05 . . . C 3 3.377 9.333 2.779 1 34.83 ? C12 I05 351 A 1 
HETATM 34 N N11 I05 . . . C 3 3.144 9.217 4.074 1 35.14 ? N11 I05 351 A 1 
HETATM 35 C C16 I05 . . . C 3 4.12 9.044 4.954 1 36.96 ? C16 I05 351 A 1 
HETATM 36 C C15 I05 . . . C 3 5.444 8.978 4.536 1 38.24 ? C15 I05 351 A 1 
#
_model_server_stats.io_time_ms              47 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           380 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           36 
#