data_1VEY # _model_server_result.job_id uaYPBsQWDxwaQbCYDzKhFw _model_server_result.datetime_utc '2024-12-05 04:31:55' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":1716}' # _entry.id 1VEY # _exptl.entry_id 1VEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 238.305 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VEY _cell.length_a 83.311 _cell.length_b 83.311 _cell.length_c 203.916 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? dimeric 2 author_defined_assembly 1 ? dimeric 2 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,G 1 1,2 B,E,F,H 2 1,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z+1/2 0 -1 0 -1 0 0 0 0 -1 83.311 83.311 101.958 3 'crystal symmetry operation' 8_556 -y,-x,-z+3/2 0 -1 0 -1 0 0 0 0 -1 0 0 305.874 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 101 A CYS 101 1_555 C ZN ZN . A ZN 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? metalc ? metalc2 A NE2 HIS 143 A HIS 143 1_555 C ZN ZN . A ZN 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.641 ? metalc ? metalc3 A NE2 HIS 147 A HIS 147 1_555 C ZN ZN . A ZN 1513 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.371 ? metalc ? metalc4 C ZN ZN . A ZN 1513 1_555 G O HOH . A HOH 1717 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.367 ? metalc ? metalc5 B SG CYS 101 B CYS 101 1_555 E ZN ZN . B ZN 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.971 ? metalc ? metalc6 B NE2 HIS 143 B HIS 143 1_555 E ZN ZN . B ZN 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc7 B NE2 HIS 147 B HIS 147 1_555 E ZN ZN . B ZN 2514 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc8 E ZN ZN . B ZN 2514 1_555 H O HOH . B HOH 2718 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.724 ? # _chem_comp.formula 'C8 H18 N2 O4 S' _chem_comp.formula_weight 238.305 _chem_comp.id EPE _chem_comp.mon_nstd_flag . _chem_comp.name '4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEPES # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 EPE sing 83 n n N1 C6 EPE sing 84 n n N1 C9 EPE sing 85 n n C2 C3 EPE sing 86 n n C2 H21 EPE sing 87 n n C2 H22 EPE sing 88 n n C3 N4 EPE sing 89 n n C3 H31 EPE sing 90 n n C3 H32 EPE sing 91 n n N4 C5 EPE sing 92 n n N4 C7 EPE sing 93 n n C5 C6 EPE sing 94 n n C5 H51 EPE sing 95 n n C5 H52 EPE sing 96 n n C6 H61 EPE sing 97 n n C6 H62 EPE sing 98 n n C7 C8 EPE sing 99 n n C7 H71 EPE sing 100 n n C7 H72 EPE sing 101 n n C8 O8 EPE sing 102 n n C8 H81 EPE sing 103 n n C8 H82 EPE sing 104 n n O8 HO8 EPE sing 105 n n C9 C10 EPE sing 106 n n C9 H91 EPE sing 107 n n C9 H92 EPE sing 108 n n C10 S EPE sing 109 n n C10 H101 EPE sing 110 n n C10 H102 EPE sing 111 n n S O1S EPE doub 112 n n S O2S EPE doub 113 n n S O3S EPE sing 114 n n O3S HOS3 EPE sing 115 n n # _atom_sites.entry_id 1VEY _atom_sites.fract_transf_matrix[1][1] 0.012003 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012003 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004904 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1513 1513 ZN ZN2 . D 3 EPE A 1 1716 1716 EPE EPE . E 2 ZN B 1 2514 2514 ZN ZN2 . F 3 EPE B 1 2717 2717 EPE EPE . G 4 HOH A 1 1717 1 HOH HOH . H 4 HOH B 1 2718 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 EPE . . . D 3 18.749 69.733 66.642 1 36.21 ? N1 EPE 1716 A 1 HETATM 2 C C2 EPE . . . D 3 20.092 69.893 65.947 1 37.21 ? C2 EPE 1716 A 1 HETATM 3 C C3 EPE . . . D 3 20.7 71.225 66.364 1 37.08 ? C3 EPE 1716 A 1 HETATM 4 N N4 EPE . . . D 3 19.843 72.339 65.9 1 38.1 ? N4 EPE 1716 A 1 HETATM 5 C C5 EPE . . . D 3 18.477 72.216 66.524 1 37.38 ? C5 EPE 1716 A 1 HETATM 6 C C6 EPE . . . D 3 17.824 70.848 66.186 1 36.72 ? C6 EPE 1716 A 1 HETATM 7 C C7 EPE . . . D 3 20.371 73.689 66.276 1 38.55 ? C7 EPE 1716 A 1 HETATM 8 C C8 EPE . . . D 3 21.759 73.992 65.729 1 41.19 ? C8 EPE 1716 A 1 HETATM 9 O O8 EPE . . . D 3 21.837 75.152 64.906 1 43.49 ? O8 EPE 1716 A 1 HETATM 10 C C9 EPE . . . D 3 18.082 68.426 66.279 1 37.45 ? C9 EPE 1716 A 1 HETATM 11 C C10 EPE . . . D 3 19.039 67.24 66.624 1 39.89 ? C10 EPE 1716 A 1 HETATM 12 S S EPE . . . D 3 18.31 65.654 66.194 1 40.77 ? S EPE 1716 A 1 HETATM 13 O O1S EPE . . . D 3 19.294 64.664 66.564 1 41.48 ? O1S EPE 1716 A 1 HETATM 14 O O2S EPE . . . D 3 18.087 65.67 64.746 1 42.36 ? O2S EPE 1716 A 1 HETATM 15 O O3S EPE . . . D 3 17.091 65.556 66.975 1 40.08 ? O3S EPE 1716 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 358 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 15 #