data_1VF2
#
_model_server_result.job_id            g_xXbrV7PDeRJ4mUE7muMA 
_model_server_result.datetime_utc      '2025-02-27 23:28:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vf2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":3468}' 
#
_entry.id    1VF2 
#
_exptl.entry_id    1VF2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              392.491 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-HEXYLGLUTATHIONE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VF2 
_cell.length_a            101.316 
_cell.length_b            115.346 
_cell.length_c            95.145 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VF2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 143 A HIS 143 6_555 D ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? 
metalc ? metalc2 B OD2 ASP 173 B ASP 1173 1_555 D ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? 
metalc ? metalc3 G O HOH . B HOH 5001 1_555 D ZN ZN . B ZN 6000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.761 ? 
#
_chem_comp.formula           'C16 H30 N3 O6 S 1' 
_chem_comp.formula_weight    392.491 
_chem_comp.id                GTX 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              S-HEXYLGLUTATHIONE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 CA1 GTX sing 129 n n 
N1 HN11 GTX sing 130 n n 
N1 HN12 GTX sing 131 n n 
N1 HN13 GTX sing 132 n n 
CA1 C1 GTX sing 133 n n 
CA1 CB1 GTX sing 134 n n 
CA1 HA1 GTX sing 135 n n 
C1 O11 GTX doub 136 n n 
C1 O12 GTX sing 137 n n 
O12 HO2 GTX sing 138 n n 
CB1 CG1 GTX sing 139 n n 
CB1 HB11 GTX sing 140 n n 
CB1 HB12 GTX sing 141 n n 
CG1 CD1 GTX sing 142 n n 
CG1 HG11 GTX sing 143 n n 
CG1 HG12 GTX sing 144 n n 
CD1 OE1 GTX doub 145 n n 
CD1 N2 GTX sing 146 n n 
N2 CA2 GTX sing 147 n n 
N2 HN2 GTX sing 148 n n 
CA2 C2 GTX sing 149 n n 
CA2 CB2 GTX sing 150 n n 
CA2 HA2 GTX sing 151 n n 
C2 O2 GTX doub 152 n n 
C2 N3 GTX sing 153 n n 
CB2 SG2 GTX sing 154 n n 
CB2 HB21 GTX sing 155 n n 
CB2 HB22 GTX sing 156 n n 
SG2 C1S GTX sing 157 n n 
C1S C2S GTX sing 158 n n 
C1S HS11 GTX sing 159 n n 
C1S HS12 GTX sing 160 n n 
C2S C3S GTX sing 161 n n 
C2S HS21 GTX sing 162 n n 
C2S HS22 GTX sing 163 n n 
C3S C4S GTX sing 164 n n 
C3S HS31 GTX sing 165 n n 
C3S HS32 GTX sing 166 n n 
C4S C5S GTX sing 167 n n 
C4S HS41 GTX sing 168 n n 
C4S HS42 GTX sing 169 n n 
C5S C6S GTX sing 170 n n 
C5S HS51 GTX sing 171 n n 
C5S HS52 GTX sing 172 n n 
C6S HS61 GTX sing 173 n n 
C6S HS62 GTX sing 174 n n 
C6S HS63 GTX sing 175 n n 
N3 CA3 GTX sing 176 n n 
N3 HN3 GTX sing 177 n n 
CA3 C3 GTX sing 178 n n 
CA3 HA31 GTX sing 179 n n 
CA3 HA32 GTX sing 180 n n 
C3 O31 GTX doub 181 n n 
C3 O32 GTX sing 182 n n 
O32 HO3 GTX sing 183 n n 
#
_atom_sites.entry_id                     1VF2 
_atom_sites.fract_transf_matrix[1][1]    0.00987 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.00867 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.01051 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GTX A 1 2457 2457 GTX GTX . 
D 3 ZN B 1 6000 6000 ZN ZN2 . 
E 2 GTX B 1 3468 3468 GTX GTX . 
F 4 HOH A 1 5002 5002 HOH TIP . 
F 4 HOH A 2 5004 5004 HOH TIP . 
F 4 HOH A 3 5005 5005 HOH TIP . 
F 4 HOH A 4 5008 5008 HOH TIP . 
F 4 HOH A 5 5014 5014 HOH TIP . 
F 4 HOH A 6 5018 5018 HOH TIP . 
F 4 HOH A 7 5022 5022 HOH TIP . 
F 4 HOH A 8 5023 5023 HOH TIP . 
F 4 HOH A 9 5026 5026 HOH TIP . 
F 4 HOH A 10 5031 5031 HOH TIP . 
F 4 HOH A 11 5032 5032 HOH TIP . 
F 4 HOH A 12 5033 5033 HOH TIP . 
F 4 HOH A 13 5034 5034 HOH TIP . 
F 4 HOH A 14 5036 5036 HOH TIP . 
F 4 HOH A 15 5040 5040 HOH TIP . 
F 4 HOH A 16 5041 5041 HOH TIP . 
F 4 HOH A 17 5043 5043 HOH TIP . 
F 4 HOH A 18 5046 5046 HOH TIP . 
F 4 HOH A 19 5047 5047 HOH TIP . 
F 4 HOH A 20 5048 5048 HOH TIP . 
F 4 HOH A 21 5054 5054 HOH TIP . 
F 4 HOH A 22 5055 5055 HOH TIP . 
F 4 HOH A 23 5058 5058 HOH TIP . 
F 4 HOH A 24 5060 5060 HOH TIP . 
F 4 HOH A 25 5061 5061 HOH TIP . 
F 4 HOH A 26 5062 5062 HOH TIP . 
F 4 HOH A 27 5064 5064 HOH TIP . 
F 4 HOH A 28 5066 5066 HOH TIP . 
F 4 HOH A 29 5068 5068 HOH TIP . 
F 4 HOH A 30 5069 5069 HOH TIP . 
F 4 HOH A 31 5071 5071 HOH TIP . 
F 4 HOH A 32 5073 5073 HOH TIP . 
F 4 HOH A 33 5074 5074 HOH TIP . 
F 4 HOH A 34 5075 5075 HOH TIP . 
F 4 HOH A 35 5076 5076 HOH TIP . 
F 4 HOH A 36 5077 5077 HOH TIP . 
F 4 HOH A 37 5078 5078 HOH TIP . 
F 4 HOH A 38 5081 5081 HOH TIP . 
F 4 HOH A 39 5082 5082 HOH TIP . 
F 4 HOH A 40 5083 5083 HOH TIP . 
F 4 HOH A 41 5085 5085 HOH TIP . 
F 4 HOH A 42 5087 5087 HOH TIP . 
F 4 HOH A 43 5089 5089 HOH TIP . 
F 4 HOH A 44 5092 5092 HOH TIP . 
F 4 HOH A 45 5093 5093 HOH TIP . 
F 4 HOH A 46 5094 5094 HOH TIP . 
F 4 HOH A 47 5095 5095 HOH TIP . 
F 4 HOH A 48 5097 5097 HOH TIP . 
F 4 HOH A 49 5098 5098 HOH TIP . 
F 4 HOH A 50 5102 5102 HOH TIP . 
F 4 HOH A 51 5104 5104 HOH TIP . 
G 4 HOH B 1 5001 5001 HOH TIP . 
G 4 HOH B 2 5003 5003 HOH TIP . 
G 4 HOH B 3 5006 5006 HOH TIP . 
G 4 HOH B 4 5007 5007 HOH TIP . 
G 4 HOH B 5 5009 5009 HOH TIP . 
G 4 HOH B 6 5010 5010 HOH TIP . 
G 4 HOH B 7 5011 5011 HOH TIP . 
G 4 HOH B 8 5012 5012 HOH TIP . 
G 4 HOH B 9 5013 5013 HOH TIP . 
G 4 HOH B 10 5015 5015 HOH TIP . 
G 4 HOH B 11 5016 5016 HOH TIP . 
G 4 HOH B 12 5017 5017 HOH TIP . 
G 4 HOH B 13 5019 5019 HOH TIP . 
G 4 HOH B 14 5020 5020 HOH TIP . 
G 4 HOH B 15 5021 5021 HOH TIP . 
G 4 HOH B 16 5025 5025 HOH TIP . 
G 4 HOH B 17 5027 5027 HOH TIP . 
G 4 HOH B 18 5029 5029 HOH TIP . 
G 4 HOH B 19 5030 5030 HOH TIP . 
G 4 HOH B 20 5035 5035 HOH TIP . 
G 4 HOH B 21 5037 5037 HOH TIP . 
G 4 HOH B 22 5038 5038 HOH TIP . 
G 4 HOH B 23 5039 5039 HOH TIP . 
G 4 HOH B 24 5042 5042 HOH TIP . 
G 4 HOH B 25 5044 5044 HOH TIP . 
G 4 HOH B 26 5045 5045 HOH TIP . 
G 4 HOH B 27 5049 5049 HOH TIP . 
G 4 HOH B 28 5050 5050 HOH TIP . 
G 4 HOH B 29 5051 5051 HOH TIP . 
G 4 HOH B 30 5052 5052 HOH TIP . 
G 4 HOH B 31 5053 5053 HOH TIP . 
G 4 HOH B 32 5056 5056 HOH TIP . 
G 4 HOH B 33 5057 5057 HOH TIP . 
G 4 HOH B 34 5059 5059 HOH TIP . 
G 4 HOH B 35 5063 5063 HOH TIP . 
G 4 HOH B 36 5065 5065 HOH TIP . 
G 4 HOH B 37 5067 5067 HOH TIP . 
G 4 HOH B 38 5070 5070 HOH TIP . 
G 4 HOH B 39 5072 5072 HOH TIP . 
G 4 HOH B 40 5079 5079 HOH TIP . 
G 4 HOH B 41 5080 5080 HOH TIP . 
G 4 HOH B 42 5084 5084 HOH TIP . 
G 4 HOH B 43 5086 5086 HOH TIP . 
G 4 HOH B 44 5088 5088 HOH TIP . 
G 4 HOH B 45 5090 5090 HOH TIP . 
G 4 HOH B 46 5091 5091 HOH TIP . 
G 4 HOH B 47 5096 5096 HOH TIP . 
G 4 HOH B 48 5099 5099 HOH TIP . 
G 4 HOH B 49 5100 5100 HOH TIP . 
G 4 HOH B 50 5101 5101 HOH TIP . 
G 4 HOH B 51 5103 5103 HOH TIP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 GTX . . . E 2 20.082 19.912 19.664 1 24.96 ? N1 GTX 3468 B 1 
HETATM 2 C CA1 GTX . . . E 2 19.437 20.969 18.963 1 26.48 ? CA1 GTX 3468 B 1 
HETATM 3 C C1 GTX . . . E 2 20.464 22.112 18.917 1 26.97 ? C1 GTX 3468 B 1 
HETATM 4 O O11 GTX . . . E 2 20.402 22.918 17.972 1 25.99 ? O11 GTX 3468 B 1 
HETATM 5 O O12 GTX . . . E 2 21.304 22.201 19.812 1 26.2 ? O12 GTX 3468 B 1 
HETATM 6 C CB1 GTX . . . E 2 18.15 21.356 19.715 1 28.37 ? CB1 GTX 3468 B 1 
HETATM 7 C CG1 GTX . . . E 2 17.338 22.373 18.933 1 31.21 ? CG1 GTX 3468 B 1 
HETATM 8 C CD1 GTX . . . E 2 16.046 22.803 19.571 1 33.63 ? CD1 GTX 3468 B 1 
HETATM 9 O OE1 GTX . . . E 2 15.668 22.35 20.656 1 32.53 ? OE1 GTX 3468 B 1 
HETATM 10 N N2 GTX . . . E 2 15.39 23.681 18.839 1 33.81 ? N2 GTX 3468 B 1 
HETATM 11 C CA2 GTX . . . E 2 14.119 24.24 19.213 1 34.31 ? CA2 GTX 3468 B 1 
HETATM 12 C C2 GTX . . . E 2 13.132 23.843 18.131 1 34.05 ? C2 GTX 3468 B 1 
HETATM 13 O O2 GTX . . . E 2 13.353 24.207 16.97 1 34.62 ? O2 GTX 3468 B 1 
HETATM 14 C CB2 GTX . . . E 2 14.231 25.749 19.298 1 34.97 ? CB2 GTX 3468 B 1 
HETATM 15 S SG2 GTX . . . E 2 15.401 26.366 20.54 1 39.13 ? SG2 GTX 3468 B 1 
HETATM 16 C C1S GTX . . . E 2 13.984 26.791 21.588 1 45.85 ? C1S GTX 3468 B 1 
HETATM 17 C C2S GTX . . . E 2 14.365 27.316 22.966 1 48.64 ? C2S GTX 3468 B 1 
HETATM 18 C C3S GTX . . . E 2 13.96 26.307 24.01 1 50.11 ? C3S GTX 3468 B 1 
HETATM 19 C C4S GTX . . . E 2 13.663 26.97 25.327 1 53.13 ? C4S GTX 3468 B 1 
HETATM 20 C C5S GTX . . . E 2 12.446 26.367 25.986 1 53.56 ? C5S GTX 3468 B 1 
HETATM 21 C C6S GTX . . . E 2 12.846 25.44 27.134 1 54.93 ? C6S GTX 3468 B 1 
HETATM 22 N N3 GTX . . . E 2 12.08 23.104 18.508 1 37.27 ? N3 GTX 3468 B 1 
HETATM 23 C CA3 GTX . . . E 2 11.071 22.663 17.55 1 37.72 ? CA3 GTX 3468 B 1 
HETATM 24 C C3 GTX . . . E 2 10.827 21.165 17.598 1 39.78 ? C3 GTX 3468 B 1 
HETATM 25 O O31 GTX . . . E 2 10.031 20.678 16.801 1 41.7 ? O31 GTX 3468 B 1 
HETATM 26 O O32 GTX . . . E 2 11.423 20.465 18.431 1 40.95 ? O32 GTX 3468 B 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           247 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           26 
#