data_1VFD # _model_server_result.job_id zeFQVk4bTs8_ldA8Sy1TPw _model_server_result.datetime_utc '2024-11-18 09:42:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vfd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":400}' # _entry.id 1VFD # _exptl.entry_id 1VFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 55.845 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FE (III) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VFD _cell.length_a 98.1 _cell.length_b 78.9 _cell.length_c 113.6 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 A CYS 9 1_555 A SG CYS 45 A CYS 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 19 A CYS 19 1_555 A SG CYS 36 A CYS 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf3 A SG CYS 115 A CYS 115 1_555 A SG CYS 198 A CYS 198 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? disulf ? disulf4 A SG CYS 157 A CYS 157 1_555 A SG CYS 173 A CYS 173 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 A SG CYS 170 A CYS 170 1_555 A SG CYS 181 A CYS 181 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? disulf ? disulf6 A SG CYS 231 A CYS 231 1_555 A SG CYS 245 A CYS 245 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc1 A OD1 ASP 60 A ASP 60 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.916 ? metalc ? metalc2 A OH TYR 92 A TYR 92 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.806 ? metalc ? metalc3 A OH TYR 192 A TYR 192 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? metalc ? metalc4 A NE2 HIS 253 A HIS 253 1_555 B FE FE . A FE 400 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.964 ? metalc ? metalc5 B FE FE . A FE 400 1_555 C O1 CO3 . A CO3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc6 B FE FE . A FE 400 1_555 C O2 CO3 . A CO3 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.228 ? # _chem_comp.formula 'Fe 3' _chem_comp.formula_weight 55.845 _chem_comp.id FE _chem_comp.mon_nstd_flag . _chem_comp.name 'FE (III) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VFD _atom_sites.fract_transf_matrix[1][1] 0.010194 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012674 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE A 1 400 400 FE FE . C 3 CO3 A 1 401 401 CO3 CO3 . D 4 HOH A 1 500 500 HOH HOH . D 4 HOH A 2 501 501 HOH HOH . D 4 HOH A 3 502 502 HOH HOH . D 4 HOH A 4 504 504 HOH HOH . D 4 HOH A 5 505 505 HOH HOH . D 4 HOH A 6 506 506 HOH HOH . D 4 HOH A 7 507 507 HOH HOH . D 4 HOH A 8 508 508 HOH HOH . D 4 HOH A 9 509 509 HOH HOH . D 4 HOH A 10 510 510 HOH HOH . D 4 HOH A 11 511 511 HOH HOH . D 4 HOH A 12 512 512 HOH HOH . D 4 HOH A 13 513 513 HOH HOH . D 4 HOH A 14 514 514 HOH HOH . D 4 HOH A 15 515 515 HOH HOH . D 4 HOH A 16 516 516 HOH HOH . D 4 HOH A 17 517 517 HOH HOH . D 4 HOH A 18 518 518 HOH HOH . D 4 HOH A 19 519 519 HOH HOH . D 4 HOH A 20 520 520 HOH HOH . D 4 HOH A 21 521 521 HOH HOH . D 4 HOH A 22 522 522 HOH HOH . D 4 HOH A 23 523 523 HOH HOH . D 4 HOH A 24 524 524 HOH HOH . D 4 HOH A 25 525 525 HOH HOH . D 4 HOH A 26 526 526 HOH HOH . D 4 HOH A 27 527 527 HOH HOH . D 4 HOH A 28 528 528 HOH HOH . D 4 HOH A 29 529 529 HOH HOH . D 4 HOH A 30 530 530 HOH HOH . D 4 HOH A 31 531 531 HOH HOH . D 4 HOH A 32 532 532 HOH HOH . D 4 HOH A 33 533 533 HOH HOH . D 4 HOH A 34 534 534 HOH HOH . D 4 HOH A 35 535 535 HOH HOH . D 4 HOH A 36 536 536 HOH HOH . D 4 HOH A 37 537 537 HOH HOH . D 4 HOH A 38 538 538 HOH HOH . D 4 HOH A 39 539 539 HOH HOH . D 4 HOH A 40 540 540 HOH HOH . D 4 HOH A 41 541 541 HOH HOH . D 4 HOH A 42 542 542 HOH HOH . D 4 HOH A 43 543 543 HOH HOH . D 4 HOH A 44 544 544 HOH HOH . D 4 HOH A 45 545 545 HOH HOH . D 4 HOH A 46 548 548 HOH HOH . D 4 HOH A 47 549 549 HOH HOH . D 4 HOH A 48 550 550 HOH HOH . D 4 HOH A 49 551 551 HOH HOH . D 4 HOH A 50 552 552 HOH HOH . D 4 HOH A 51 553 553 HOH HOH . D 4 HOH A 52 554 554 HOH HOH . D 4 HOH A 53 555 555 HOH HOH . D 4 HOH A 54 556 556 HOH HOH . D 4 HOH A 55 557 557 HOH HOH . D 4 HOH A 56 558 558 HOH HOH . D 4 HOH A 57 559 559 HOH HOH . D 4 HOH A 58 560 560 HOH HOH . D 4 HOH A 59 561 561 HOH HOH . D 4 HOH A 60 562 562 HOH HOH . D 4 HOH A 61 563 563 HOH HOH . D 4 HOH A 62 564 564 HOH HOH . D 4 HOH A 63 565 565 HOH HOH . D 4 HOH A 64 567 567 HOH HOH . D 4 HOH A 65 570 570 HOH HOH . D 4 HOH A 66 571 571 HOH HOH . D 4 HOH A 67 574 574 HOH HOH . D 4 HOH A 68 575 575 HOH HOH . D 4 HOH A 69 576 576 HOH HOH . D 4 HOH A 70 578 578 HOH HOH . D 4 HOH A 71 579 579 HOH HOH . D 4 HOH A 72 580 580 HOH HOH . D 4 HOH A 73 581 581 HOH HOH . D 4 HOH A 74 582 582 HOH HOH . D 4 HOH A 75 583 583 HOH HOH . D 4 HOH A 76 584 584 HOH HOH . D 4 HOH A 77 585 585 HOH HOH . D 4 HOH A 78 586 586 HOH HOH . D 4 HOH A 79 587 587 HOH HOH . D 4 HOH A 80 588 588 HOH HOH . D 4 HOH A 81 590 590 HOH HOH . D 4 HOH A 82 591 591 HOH HOH . D 4 HOH A 83 592 592 HOH HOH . D 4 HOH A 84 593 593 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol FE _atom_site.label_atom_id FE _atom_site.label_comp_id FE _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id B _atom_site.label_entity_id 2 _atom_site.Cartn_x -28.854 _atom_site.Cartn_y 67.769 _atom_site.Cartn_z 20.183 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.84 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id FE _atom_site.auth_comp_id FE _atom_site.auth_seq_id 400 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #