data_1VFX # _model_server_result.job_id H_iyoMBrZq40yRVADu9nfw _model_server_result.datetime_utc '2024-12-22 01:58:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vfx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":401}' # _entry.id 1VFX # _exptl.entry_id 1VFX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VFX _cell.length_a 41.934 _cell.length_b 54.649 _cell.length_c 156.784 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VFX _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id OG _struct_conn.ptnr1_label_comp_id SER _struct_conn.ptnr1_label_seq_id 104 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id SER _struct_conn.ptnr1_auth_seq_id 104 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id MG _struct_conn.ptnr2_label_comp_id MG _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id MG _struct_conn.ptnr2_auth_seq_id 501 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 381 n n C C2 TRS sing 382 n n C C3 TRS sing 383 n n C N TRS sing 384 n n C1 O1 TRS sing 385 n n C1 H11 TRS sing 386 n n C1 H12 TRS sing 387 n n C2 O2 TRS sing 388 n n C2 H21 TRS sing 389 n n C2 H22 TRS sing 390 n n C3 O3 TRS sing 391 n n C3 H31 TRS sing 392 n n C3 H32 TRS sing 393 n n N HN1 TRS sing 394 n n N HN2 TRS sing 395 n n N HN3 TRS sing 396 n n O1 HO1 TRS sing 397 n n O2 HO2 TRS sing 398 n n O3 HO3 TRS sing 399 n n # _atom_sites.entry_id 1VFX _atom_sites.fract_transf_matrix[1][1] 0.023847 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006378 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 501 501 MG MG . C 3 AF3 A 1 400 400 AF3 AF3 . D 4 TRS A 1 401 401 TRS TRS . E 4 TRS A 1 402 402 TRS TRS . F 5 ADP A 1 500 500 ADP ADP . G 6 HOH A 1 502 502 HOH HOH . G 6 HOH A 2 503 503 HOH HOH . G 6 HOH A 3 504 504 HOH HOH . G 6 HOH A 4 505 505 HOH HOH . G 6 HOH A 5 506 506 HOH HOH . G 6 HOH A 6 507 507 HOH HOH . G 6 HOH A 7 508 508 HOH HOH . G 6 HOH A 8 509 509 HOH HOH . G 6 HOH A 9 510 510 HOH HOH . G 6 HOH A 10 511 511 HOH HOH . G 6 HOH A 11 512 512 HOH HOH . G 6 HOH A 12 513 513 HOH HOH . G 6 HOH A 13 514 514 HOH HOH . G 6 HOH A 14 515 515 HOH HOH . G 6 HOH A 15 516 516 HOH HOH . G 6 HOH A 16 517 517 HOH HOH . G 6 HOH A 17 518 518 HOH HOH . G 6 HOH A 18 519 519 HOH HOH . G 6 HOH A 19 520 520 HOH HOH . G 6 HOH A 20 521 521 HOH HOH . G 6 HOH A 21 522 522 HOH HOH . G 6 HOH A 22 523 523 HOH HOH . G 6 HOH A 23 524 524 HOH HOH . G 6 HOH A 24 525 525 HOH HOH . G 6 HOH A 25 526 526 HOH HOH . G 6 HOH A 26 527 527 HOH HOH . G 6 HOH A 27 528 528 HOH HOH . G 6 HOH A 28 529 529 HOH HOH . G 6 HOH A 29 530 530 HOH HOH . G 6 HOH A 30 531 531 HOH HOH . G 6 HOH A 31 532 532 HOH HOH . G 6 HOH A 32 533 533 HOH HOH . G 6 HOH A 33 534 534 HOH HOH . G 6 HOH A 34 535 535 HOH HOH . G 6 HOH A 35 536 536 HOH HOH . G 6 HOH A 36 537 537 HOH HOH . G 6 HOH A 37 538 538 HOH HOH . G 6 HOH A 38 539 539 HOH HOH . G 6 HOH A 39 540 540 HOH HOH . G 6 HOH A 40 541 541 HOH HOH . G 6 HOH A 41 542 542 HOH HOH . G 6 HOH A 42 543 543 HOH HOH . G 6 HOH A 43 544 544 HOH HOH . G 6 HOH A 44 545 545 HOH HOH . G 6 HOH A 45 546 546 HOH HOH . G 6 HOH A 46 547 547 HOH HOH . G 6 HOH A 47 548 548 HOH HOH . G 6 HOH A 48 549 549 HOH HOH . G 6 HOH A 49 550 550 HOH HOH . G 6 HOH A 50 551 551 HOH HOH . G 6 HOH A 51 552 552 HOH HOH . G 6 HOH A 52 553 553 HOH HOH . G 6 HOH A 53 554 554 HOH HOH . G 6 HOH A 54 555 555 HOH HOH . G 6 HOH A 55 556 556 HOH HOH . G 6 HOH A 56 557 557 HOH HOH . G 6 HOH A 57 558 558 HOH HOH . G 6 HOH A 58 559 559 HOH HOH . G 6 HOH A 59 560 560 HOH HOH . G 6 HOH A 60 561 561 HOH HOH . G 6 HOH A 61 562 562 HOH HOH . G 6 HOH A 62 563 563 HOH HOH . G 6 HOH A 63 564 564 HOH HOH . G 6 HOH A 64 565 565 HOH HOH . G 6 HOH A 65 566 566 HOH HOH . G 6 HOH A 66 567 567 HOH HOH . G 6 HOH A 67 568 568 HOH HOH . G 6 HOH A 68 569 569 HOH HOH . G 6 HOH A 69 570 570 HOH HOH . G 6 HOH A 70 571 571 HOH HOH . G 6 HOH A 71 572 572 HOH HOH . G 6 HOH A 72 573 573 HOH HOH . G 6 HOH A 73 574 574 HOH HOH . G 6 HOH A 74 575 575 HOH HOH . G 6 HOH A 75 576 576 HOH HOH . G 6 HOH A 76 577 577 HOH HOH . G 6 HOH A 77 578 578 HOH HOH . G 6 HOH A 78 579 579 HOH HOH . G 6 HOH A 79 580 580 HOH HOH . G 6 HOH A 80 581 581 HOH HOH . G 6 HOH A 81 582 582 HOH HOH . G 6 HOH A 82 583 583 HOH HOH . G 6 HOH A 83 584 584 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . D 4 -13.461 25.343 -1.402 1 87.41 ? C TRS 401 A 1 HETATM 2 C C1 TRS . . . D 4 -12.079 25.865 -1.716 1 84.82 ? C1 TRS 401 A 1 HETATM 3 C C2 TRS . . . D 4 -13.898 24.643 -0.115 1 87.39 ? C2 TRS 401 A 1 HETATM 4 C C3 TRS . . . D 4 -14.415 26.053 -2.348 1 87.3 ? C3 TRS 401 A 1 HETATM 5 N N TRS . . . D 4 -13.715 26.388 -0.382 1 87.53 ? N TRS 401 A 1 HETATM 6 O O1 TRS . . . D 4 -11.63 25.446 -3.08 1 79.52 ? O1 TRS 401 A 1 HETATM 7 O O2 TRS . . . D 4 -12.753 24.038 0.588 1 87.38 ? O2 TRS 401 A 1 HETATM 8 O O3 TRS . . . D 4 -14.499 25.364 -3.603 1 87.11 ? O3 TRS 401 A 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 360 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #