data_1VGF # _model_server_result.job_id uOhVm6D3-sT2n33knU526Q _model_server_result.datetime_utc '2025-03-05 01:13:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vgf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":3007}' # _entry.id 1VGF # _exptl.entry_id 1VGF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 59.044 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ACETATE ION' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VGF _cell.length_a 56.31 _cell.length_b 56.31 _cell.length_c 264.919 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VGF _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,J 1 1 B,F,G,H,I,K 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N ? 2 I N N # _chem_comp.formula 'C2 H3 O2 -1' _chem_comp.formula_weight 59.044 _chem_comp.id ACT _chem_comp.mon_nstd_flag . _chem_comp.name 'ACETATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O ACT doub 1 n n C OXT ACT sing 2 n n C CH3 ACT sing 3 n n CH3 H1 ACT sing 4 n n CH3 H2 ACT sing 5 n n CH3 H3 ACT sing 6 n n # _atom_sites.entry_id 1VGF _atom_sites.fract_transf_matrix[1][1] 0.017759 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017759 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.003775 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ACT A 1 3003 3003 ACT ACY . D 2 ACT A 1 3004 3004 ACT ACY . E 2 ACT A 1 3006 3006 ACT ACY . F 2 ACT B 1 3001 3001 ACT ACY . G 2 ACT B 1 3002 3002 ACT ACY . H 2 ACT B 1 3005 3005 ACT ACY . I 2 ACT B 1 3007 3007 ACT ACY . J 3 HOH A 1 3007 2 HOH TIP . J 3 HOH A 2 3008 4 HOH TIP . J 3 HOH A 3 3009 8 HOH TIP . J 3 HOH A 4 3010 14 HOH TIP . J 3 HOH A 5 3011 15 HOH TIP . J 3 HOH A 6 3012 21 HOH TIP . J 3 HOH A 7 3013 22 HOH TIP . J 3 HOH A 8 3014 23 HOH TIP . J 3 HOH A 9 3015 28 HOH TIP . J 3 HOH A 10 3016 29 HOH TIP . J 3 HOH A 11 3017 30 HOH TIP . J 3 HOH A 12 3018 31 HOH TIP . J 3 HOH A 13 3019 32 HOH TIP . J 3 HOH A 14 3020 34 HOH TIP . K 3 HOH B 1 1 1 HOH TIP . K 3 HOH B 2 3 3 HOH TIP . K 3 HOH B 3 5 5 HOH TIP . K 3 HOH B 4 6 6 HOH TIP . K 3 HOH B 5 7 7 HOH TIP . K 3 HOH B 6 9 9 HOH TIP . K 3 HOH B 7 10 10 HOH TIP . K 3 HOH B 8 11 11 HOH TIP . K 3 HOH B 9 12 12 HOH TIP . K 3 HOH B 10 13 13 HOH TIP . K 3 HOH B 11 16 16 HOH TIP . K 3 HOH B 12 17 17 HOH TIP . K 3 HOH B 13 18 18 HOH TIP . K 3 HOH B 14 19 19 HOH TIP . K 3 HOH B 15 20 20 HOH TIP . K 3 HOH B 16 24 24 HOH TIP . K 3 HOH B 17 25 25 HOH TIP . K 3 HOH B 18 26 26 HOH TIP . K 3 HOH B 19 27 27 HOH TIP . K 3 HOH B 20 33 33 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C ACT . . . I 2 18.836 58.602 53.594 1 64.16 ? C ACT 3007 B 1 HETATM 2 O O ACT . . . I 2 18.272 58.612 52.426 1 65.24 ? O ACT 3007 B 1 HETATM 3 O OXT ACT . . . I 2 18.261 58.711 54.731 1 65.65 ? OXT ACT 3007 B 1 HETATM 4 C CH3 ACT . . . I 2 20.346 58.442 53.531 1 63.56 ? CH3 ACT 3007 B 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 585 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 4 #