data_1VGI # _model_server_result.job_id mZbw-x49MMpAcqK_DQsWfQ _model_server_result.datetime_utc '2024-11-23 08:53:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vgi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":302}' # _entry.id 1VGI # _exptl.entry_id 1VGI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 46.025 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'FORMIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VGI _cell.length_a 65.1 _cell.length_b 65.1 _cell.length_c 120.5 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VGI _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 25 A HIS 25 1_555 B FE HEM . A HEM 300 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc2 B FE HEM . A HEM 300 1_555 E O HOH . A HOH 369 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? # _chem_comp.formula 'C H2 O2' _chem_comp.formula_weight 46.025 _chem_comp.id FMT _chem_comp.mon_nstd_flag . _chem_comp.name 'FORMIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O1 FMT doub 70 n n C O2 FMT sing 71 n n C H FMT sing 72 n n O2 HO2 FMT sing 73 n n # _atom_sites.entry_id 1VGI _atom_sites.fract_transf_matrix[1][1] 0.015361 _atom_sites.fract_transf_matrix[1][2] 0.008869 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017737 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008299 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HEM A 1 300 300 HEM HEM . C 3 XE A 1 301 2 XE XE . D 4 FMT A 1 302 1 FMT FMT . E 5 HOH A 1 303 1 HOH WAT . E 5 HOH A 2 304 2 HOH WAT . E 5 HOH A 3 305 3 HOH WAT . E 5 HOH A 4 306 4 HOH WAT . E 5 HOH A 5 307 5 HOH WAT . E 5 HOH A 6 308 6 HOH WAT . E 5 HOH A 7 309 7 HOH WAT . E 5 HOH A 8 310 8 HOH WAT . E 5 HOH A 9 311 9 HOH WAT . E 5 HOH A 10 312 10 HOH WAT . E 5 HOH A 11 313 12 HOH WAT . E 5 HOH A 12 314 13 HOH WAT . E 5 HOH A 13 315 14 HOH WAT . E 5 HOH A 14 316 15 HOH WAT . E 5 HOH A 15 317 16 HOH WAT . E 5 HOH A 16 318 17 HOH WAT . E 5 HOH A 17 319 18 HOH WAT . E 5 HOH A 18 320 19 HOH WAT . E 5 HOH A 19 321 20 HOH WAT . E 5 HOH A 20 322 21 HOH WAT . E 5 HOH A 21 323 22 HOH WAT . E 5 HOH A 22 324 23 HOH WAT . E 5 HOH A 23 325 24 HOH WAT . E 5 HOH A 24 326 25 HOH WAT . E 5 HOH A 25 327 26 HOH WAT . E 5 HOH A 26 328 27 HOH WAT . E 5 HOH A 27 329 28 HOH WAT . E 5 HOH A 28 330 29 HOH WAT . E 5 HOH A 29 331 30 HOH WAT . E 5 HOH A 30 332 31 HOH WAT . E 5 HOH A 31 333 32 HOH WAT . E 5 HOH A 32 334 33 HOH WAT . E 5 HOH A 33 335 34 HOH WAT . E 5 HOH A 34 336 35 HOH WAT . E 5 HOH A 35 337 36 HOH WAT . E 5 HOH A 36 338 37 HOH WAT . E 5 HOH A 37 339 38 HOH WAT . E 5 HOH A 38 340 39 HOH WAT . E 5 HOH A 39 341 40 HOH WAT . E 5 HOH A 40 342 41 HOH WAT . E 5 HOH A 41 343 42 HOH WAT . E 5 HOH A 42 344 43 HOH WAT . E 5 HOH A 43 345 44 HOH WAT . E 5 HOH A 44 346 45 HOH WAT . E 5 HOH A 45 347 46 HOH WAT . E 5 HOH A 46 348 47 HOH WAT . E 5 HOH A 47 349 48 HOH WAT . E 5 HOH A 48 350 49 HOH WAT . E 5 HOH A 49 351 50 HOH WAT . E 5 HOH A 50 352 51 HOH WAT . E 5 HOH A 51 353 52 HOH WAT . E 5 HOH A 52 354 53 HOH WAT . E 5 HOH A 53 355 54 HOH WAT . E 5 HOH A 54 356 55 HOH WAT . E 5 HOH A 55 357 56 HOH WAT . E 5 HOH A 56 358 57 HOH WAT . E 5 HOH A 57 359 58 HOH WAT . E 5 HOH A 58 360 59 HOH WAT . E 5 HOH A 59 361 60 HOH WAT . E 5 HOH A 60 362 61 HOH WAT . E 5 HOH A 61 363 62 HOH WAT . E 5 HOH A 62 364 63 HOH WAT . E 5 HOH A 63 365 64 HOH WAT . E 5 HOH A 64 366 65 HOH WAT . E 5 HOH A 65 367 66 HOH WAT . E 5 HOH A 66 368 67 HOH WAT . E 5 HOH A 67 369 68 HOH WAT . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C FMT . . . D 4 -88.378 -22.741 -78.03 1 46.18 ? C FMT 302 A 1 HETATM 2 O O1 FMT . . . D 4 -88.252 -21.346 -77.448 1 44.58 ? O1 FMT 302 A 1 HETATM 3 O O2 FMT . . . D 4 -88.448 -22.722 -79.574 1 44.72 ? O2 FMT 302 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 24 _model_server_stats.query_time_ms 472 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 3 #