data_1VGO
#
_model_server_result.job_id            ZOPfkOjDrGJ1iGps6JU_yQ 
_model_server_result.datetime_utc      '2024-11-02 05:23:35' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vgo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":260}' 
#
_entry.id    1VGO 
#
_exptl.entry_id    1VGO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              284.436 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            RETINAL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VGO 
_cell.length_a            122.88 
_cell.length_b            139.48 
_cell.length_c            108.1 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VGO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        20 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 M N N 
? 4 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A NZ LYS 221 A LYS 221 1_555 M C15 RET . A RET 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? 
covale ? covale2 B NZ LYS 221 B LYS 221 1_555 S C15 RET . B RET 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? 
#
_chem_comp.formula           'C20 H28 O' 
_chem_comp.formula_weight    284.436 
_chem_comp.id                RET 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              RETINAL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 RET sing 294 n n 
C1 C6 RET sing 295 n n 
C1 C16 RET sing 296 n n 
C1 C17 RET sing 297 n n 
C2 C3 RET sing 298 n n 
C2 H21 RET sing 299 n n 
C2 H22 RET sing 300 n n 
C3 C4 RET sing 301 n n 
C3 H31 RET sing 302 n n 
C3 H32 RET sing 303 n n 
C4 C5 RET sing 304 n n 
C4 H41 RET sing 305 n n 
C4 H42 RET sing 306 n n 
C5 C6 RET doub 307 n n 
C5 C18 RET sing 308 n n 
C6 C7 RET sing 309 n n 
C7 C8 RET doub 310 e n 
C7 H7 RET sing 311 n n 
C8 C9 RET sing 312 n n 
C8 H8 RET sing 313 n n 
C9 C10 RET doub 314 e n 
C9 C19 RET sing 315 n n 
C10 C11 RET sing 316 n n 
C10 H10 RET sing 317 n n 
C11 C12 RET doub 318 e n 
C11 H11 RET sing 319 n n 
C12 C13 RET sing 320 n n 
C12 H12 RET sing 321 n n 
C13 C14 RET doub 322 e n 
C13 C20 RET sing 323 n n 
C14 C15 RET sing 324 n n 
C14 H14 RET sing 325 n n 
C15 O1 RET doub 326 n n 
C15 H15 RET sing 327 n n 
C16 H161 RET sing 328 n n 
C16 H162 RET sing 329 n n 
C16 H163 RET sing 330 n n 
C17 H171 RET sing 331 n n 
C17 H172 RET sing 332 n n 
C17 H173 RET sing 333 n n 
C18 H181 RET sing 334 n n 
C18 H182 RET sing 335 n n 
C18 H183 RET sing 336 n n 
C19 H191 RET sing 337 n n 
C19 H192 RET sing 338 n n 
C19 H193 RET sing 339 n n 
C20 H201 RET sing 340 n n 
C20 H202 RET sing 341 n n 
C20 H203 RET sing 342 n n 
#
_atom_sites.entry_id                     1VGO 
_atom_sites.fract_transf_matrix[1][1]    0.008138 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.007169 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009251 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 BNG A 1 301 301 BNG BNG . 
D 2 BNG A 1 302 302 BNG BNG . 
E 2 BNG A 1 303 303 BNG BNG . 
F 2 BNG A 1 304 304 BNG BNG . 
G 2 BNG A 1 305 305 BNG BNG . 
H 2 BNG A 1 306 306 BNG BNG . 
I 2 BNG A 1 307 307 BNG BNG . 
J 2 BNG A 1 308 308 BNG BNG . 
K 2 BNG A 1 309 309 BNG BNG . 
L 3 SO4 A 1 400 400 SO4 SO4 . 
M 4 RET A 1 260 260 RET RET . 
N 2 BNG B 1 310 310 BNG BNG . 
O 2 BNG B 1 311 311 BNG BNG . 
P 2 BNG B 1 312 312 BNG BNG . 
Q 3 SO4 B 1 401 401 SO4 SO4 . 
R 3 SO4 B 1 402 402 SO4 SO4 . 
S 4 RET B 1 261 261 RET RET . 
T 5 HOH A 1 501 501 HOH HOH . 
T 5 HOH A 2 502 502 HOH HOH . 
T 5 HOH A 3 503 503 HOH HOH . 
T 5 HOH A 4 504 504 HOH HOH . 
T 5 HOH A 5 505 505 HOH HOH . 
T 5 HOH A 6 506 506 HOH HOH . 
T 5 HOH A 7 507 507 HOH HOH . 
T 5 HOH A 8 508 508 HOH HOH . 
T 5 HOH A 9 509 509 HOH HOH . 
T 5 HOH A 10 510 510 HOH HOH . 
T 5 HOH A 11 511 511 HOH HOH . 
T 5 HOH A 12 512 512 HOH HOH . 
T 5 HOH A 13 513 513 HOH HOH . 
T 5 HOH A 14 701 701 HOH HOH . 
T 5 HOH A 15 702 702 HOH HOH . 
T 5 HOH A 16 705 705 HOH HOH . 
U 5 HOH B 1 601 601 HOH HOH . 
U 5 HOH B 2 602 602 HOH HOH . 
U 5 HOH B 3 603 603 HOH HOH . 
U 5 HOH B 4 605 605 HOH HOH . 
U 5 HOH B 5 606 606 HOH HOH . 
U 5 HOH B 6 607 607 HOH HOH . 
U 5 HOH B 7 608 608 HOH HOH . 
U 5 HOH B 8 700 700 HOH HOH . 
U 5 HOH B 9 703 703 HOH HOH . 
U 5 HOH B 10 704 704 HOH HOH . 
U 5 HOH B 11 706 706 HOH HOH . 
U 5 HOH B 12 707 707 HOH HOH . 
U 5 HOH B 13 708 708 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 RET . . . M 4 15.682 11.907 59.369 1 43.16 ? C1 RET 260 A 1 
HETATM 2 C C2 RET . . . M 4 15.878 10.838 60.545 1 44.01 ? C2 RET 260 A 1 
HETATM 3 C C3 RET . . . M 4 17.239 10.326 60.719 1 44.38 ? C3 RET 260 A 1 
HETATM 4 C C4 RET . . . M 4 17.742 9.667 59.44 1 43.96 ? C4 RET 260 A 1 
HETATM 5 C C5 RET . . . M 4 17.702 10.583 58.224 1 44.44 ? C5 RET 260 A 1 
HETATM 6 C C6 RET . . . M 4 16.757 11.671 58.113 1 41.65 ? C6 RET 260 A 1 
HETATM 7 C C7 RET . . . M 4 16.778 12.574 56.842 1 40.46 ? C7 RET 260 A 1 
HETATM 8 C C8 RET . . . M 4 15.923 13.58 56.655 1 39.85 ? C8 RET 260 A 1 
HETATM 9 C C9 RET . . . M 4 15.989 14.46 55.505 1 41.14 ? C9 RET 260 A 1 
HETATM 10 C C10 RET . . . M 4 15.029 15.425 55.477 1 44.89 ? C10 RET 260 A 1 
HETATM 11 C C11 RET . . . M 4 14.881 16.429 54.471 1 45.07 ? C11 RET 260 A 1 
HETATM 12 C C12 RET . . . M 4 13.914 17.295 54.67 1 44.43 ? C12 RET 260 A 1 
HETATM 13 C C13 RET . . . M 4 13.579 18.383 53.75 1 46.55 ? C13 RET 260 A 1 
HETATM 14 C C14 RET . . . M 4 12.524 19.15 54.142 1 44.98 ? C14 RET 260 A 1 
HETATM 15 C C15 RET . . . M 4 11.889 20.181 53.383 1 44.37 ? C15 RET 260 A 1 
HETATM 16 C C16 RET . . . M 4 14.218 11.759 58.895 1 39.15 ? C16 RET 260 A 1 
HETATM 17 C C17 RET . . . M 4 15.905 13.244 60.097 1 39.8 ? C17 RET 260 A 1 
HETATM 18 C C18 RET . . . M 4 18.718 10.29 57.123 1 41.61 ? C18 RET 260 A 1 
HETATM 19 C C19 RET . . . M 4 17.057 14.336 54.408 1 40.75 ? C19 RET 260 A 1 
HETATM 20 C C20 RET . . . M 4 14.349 18.614 52.44 1 46.76 ? C20 RET 260 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    6 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           20 
#