data_1VGO # _model_server_result.job_id O6g5eFTrWcch2AlPVdJZkA _model_server_result.datetime_utc '2024-11-02 05:35:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vgo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":400}' # _entry.id 1VGO # _exptl.entry_id 1VGO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 96.063 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SULFATE ION' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VGO _cell.length_a 122.88 _cell.length_b 139.48 _cell.length_c 108.1 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VGO _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 L N N ? 3 Q N N ? 3 R N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 221 A LYS 221 1_555 M C15 RET . A RET 260 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale2 B NZ LYS 221 B LYS 221 1_555 S C15 RET . B RET 261 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.356 ? # _chem_comp.formula 'O4 S -2' _chem_comp.formula_weight 96.063 _chem_comp.id SO4 _chem_comp.mon_nstd_flag . _chem_comp.name 'SULFATE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag S O1 SO4 doub 356 n n S O2 SO4 doub 357 n n S O3 SO4 sing 358 n n S O4 SO4 sing 359 n n # _atom_sites.entry_id 1VGO _atom_sites.fract_transf_matrix[1][1] 0.008138 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007169 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009251 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 BNG A 1 301 301 BNG BNG . D 2 BNG A 1 302 302 BNG BNG . E 2 BNG A 1 303 303 BNG BNG . F 2 BNG A 1 304 304 BNG BNG . G 2 BNG A 1 305 305 BNG BNG . H 2 BNG A 1 306 306 BNG BNG . I 2 BNG A 1 307 307 BNG BNG . J 2 BNG A 1 308 308 BNG BNG . K 2 BNG A 1 309 309 BNG BNG . L 3 SO4 A 1 400 400 SO4 SO4 . M 4 RET A 1 260 260 RET RET . N 2 BNG B 1 310 310 BNG BNG . O 2 BNG B 1 311 311 BNG BNG . P 2 BNG B 1 312 312 BNG BNG . Q 3 SO4 B 1 401 401 SO4 SO4 . R 3 SO4 B 1 402 402 SO4 SO4 . S 4 RET B 1 261 261 RET RET . T 5 HOH A 1 501 501 HOH HOH . T 5 HOH A 2 502 502 HOH HOH . T 5 HOH A 3 503 503 HOH HOH . T 5 HOH A 4 504 504 HOH HOH . T 5 HOH A 5 505 505 HOH HOH . T 5 HOH A 6 506 506 HOH HOH . T 5 HOH A 7 507 507 HOH HOH . T 5 HOH A 8 508 508 HOH HOH . T 5 HOH A 9 509 509 HOH HOH . T 5 HOH A 10 510 510 HOH HOH . T 5 HOH A 11 511 511 HOH HOH . T 5 HOH A 12 512 512 HOH HOH . T 5 HOH A 13 513 513 HOH HOH . T 5 HOH A 14 701 701 HOH HOH . T 5 HOH A 15 702 702 HOH HOH . T 5 HOH A 16 705 705 HOH HOH . U 5 HOH B 1 601 601 HOH HOH . U 5 HOH B 2 602 602 HOH HOH . U 5 HOH B 3 603 603 HOH HOH . U 5 HOH B 4 605 605 HOH HOH . U 5 HOH B 5 606 606 HOH HOH . U 5 HOH B 6 607 607 HOH HOH . U 5 HOH B 7 608 608 HOH HOH . U 5 HOH B 8 700 700 HOH HOH . U 5 HOH B 9 703 703 HOH HOH . U 5 HOH B 10 704 704 HOH HOH . U 5 HOH B 11 706 706 HOH HOH . U 5 HOH B 12 707 707 HOH HOH . U 5 HOH B 13 708 708 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 S S SO4 . . . L 3 18.199 21.344 26.953 1 74.01 ? S SO4 400 A 1 HETATM 2 O O1 SO4 . . . L 3 19.144 21.344 28.075 1 75.93 ? O1 SO4 400 A 1 HETATM 3 O O2 SO4 . . . L 3 18.877 21.804 25.73 1 77.39 ? O2 SO4 400 A 1 HETATM 4 O O3 SO4 . . . L 3 17.682 19.988 26.725 1 75.74 ? O3 SO4 400 A 1 HETATM 5 O O4 SO4 . . . L 3 17.083 22.259 27.284 1 75.54 ? O4 SO4 400 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 275 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #