data_1VGX # _model_server_result.job_id 2LMku1lvXGRsef1QOlXJ0w _model_server_result.datetime_utc '2024-11-27 07:01:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vgx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":167}' # _entry.id 1VGX # _exptl.entry_id 1VGX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 103.19 _cell.angle_beta 90.55 _cell.angle_gamma 114.32 _cell.entry_id 1VGX _cell.length_a 42.22 _cell.length_b 42.86 _cell.length_c 49.354 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VGX _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLY 81 A GLY 81 1_555 A N CSD 82 A CSD 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale2 A C CSD 82 A CSD 82 1_555 A N ARG 83 A ARG 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 B C GLY 81 B GLY 81 1_555 B N CSD 82 B CSD 82 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale4 B C CSD 82 B CSD 82 1_555 B N ARG 83 B ARG 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? metalc ? metalc1 A NE2 HIS 57 A HIS 57 1_555 C ZN ZN . A ZN 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? metalc ? metalc2 A NE2 HIS 61 A HIS 61 1_555 C ZN ZN . A ZN 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc3 A SG CYS 125 A CYS 125 1_555 C ZN ZN . A ZN 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc4 C ZN ZN . A ZN 167 1_555 F O HOH . B HOH 190 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc5 B NE2 HIS 57 B HIS 57 1_555 D ZN ZN . B ZN 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.186 ? metalc ? metalc6 B NE2 HIS 61 B HIS 61 1_555 D ZN ZN . B ZN 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc7 B SG CYS 125 B CYS 125 1_555 D ZN ZN . B ZN 167 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc8 D ZN ZN . B ZN 167 1_555 F O HOH . B HOH 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VGX _atom_sites.fract_transf_matrix[1][1] 0.023685 _atom_sites.fract_transf_matrix[1][2] 0.010704 _atom_sites.fract_transf_matrix[1][3] 0.003055 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.025604 _atom_sites.fract_transf_matrix[2][3] 0.006745 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 167 1 ZN ZN . D 2 ZN B 1 167 2 ZN ZN . E 3 HOH A 1 168 6 HOH HOH . E 3 HOH A 2 169 7 HOH HOH . E 3 HOH A 3 170 9 HOH HOH . E 3 HOH A 4 171 14 HOH HOH . E 3 HOH A 5 172 16 HOH HOH . E 3 HOH A 6 173 19 HOH HOH . E 3 HOH A 7 174 20 HOH HOH . E 3 HOH A 8 175 22 HOH HOH . E 3 HOH A 9 176 24 HOH HOH . E 3 HOH A 10 177 25 HOH HOH . E 3 HOH A 11 178 26 HOH HOH . E 3 HOH A 12 179 30 HOH HOH . E 3 HOH A 13 180 31 HOH HOH . E 3 HOH A 14 181 32 HOH HOH . E 3 HOH A 15 182 34 HOH HOH . E 3 HOH A 16 183 35 HOH HOH . E 3 HOH A 17 184 43 HOH HOH . E 3 HOH A 18 185 45 HOH HOH . E 3 HOH A 19 186 47 HOH HOH . E 3 HOH A 20 187 48 HOH HOH . E 3 HOH A 21 188 51 HOH HOH . E 3 HOH A 22 189 54 HOH HOH . E 3 HOH A 23 190 55 HOH HOH . E 3 HOH A 24 191 58 HOH HOH . E 3 HOH A 25 192 59 HOH HOH . E 3 HOH A 26 193 60 HOH HOH . E 3 HOH A 27 194 61 HOH HOH . E 3 HOH A 28 195 62 HOH HOH . E 3 HOH A 29 196 64 HOH HOH . E 3 HOH A 30 197 65 HOH HOH . E 3 HOH A 31 198 66 HOH HOH . E 3 HOH A 32 199 70 HOH HOH . E 3 HOH A 33 200 76 HOH HOH . E 3 HOH A 34 201 77 HOH HOH . E 3 HOH A 35 202 78 HOH HOH . E 3 HOH A 36 203 80 HOH HOH . E 3 HOH A 37 204 81 HOH HOH . E 3 HOH A 38 205 82 HOH HOH . E 3 HOH A 39 206 84 HOH HOH . E 3 HOH A 40 207 86 HOH HOH . E 3 HOH A 41 208 87 HOH HOH . E 3 HOH A 42 209 88 HOH HOH . E 3 HOH A 43 210 90 HOH HOH . E 3 HOH A 44 211 94 HOH HOH . E 3 HOH A 45 212 95 HOH HOH . E 3 HOH A 46 213 97 HOH HOH . E 3 HOH A 47 214 103 HOH HOH . E 3 HOH A 48 215 104 HOH HOH . E 3 HOH A 49 216 105 HOH HOH . E 3 HOH A 50 217 108 HOH HOH . E 3 HOH A 51 218 110 HOH HOH . E 3 HOH A 52 219 111 HOH HOH . E 3 HOH A 53 220 115 HOH HOH . E 3 HOH A 54 221 116 HOH HOH . E 3 HOH A 55 222 119 HOH HOH . E 3 HOH A 56 223 121 HOH HOH . E 3 HOH A 57 224 122 HOH HOH . E 3 HOH A 58 225 124 HOH HOH . E 3 HOH A 59 226 125 HOH HOH . E 3 HOH A 60 227 127 HOH HOH . E 3 HOH A 61 228 128 HOH HOH . E 3 HOH A 62 229 133 HOH HOH . E 3 HOH A 63 230 135 HOH HOH . E 3 HOH A 64 231 138 HOH HOH . E 3 HOH A 65 232 139 HOH HOH . E 3 HOH A 66 233 140 HOH HOH . E 3 HOH A 67 234 141 HOH HOH . E 3 HOH A 68 235 142 HOH HOH . E 3 HOH A 69 236 143 HOH HOH . E 3 HOH A 70 237 144 HOH HOH . E 3 HOH A 71 238 147 HOH HOH . E 3 HOH A 72 239 148 HOH HOH . E 3 HOH A 73 240 149 HOH HOH . E 3 HOH A 74 241 153 HOH HOH . E 3 HOH A 75 242 154 HOH HOH . E 3 HOH A 76 243 157 HOH HOH . E 3 HOH A 77 244 158 HOH HOH . E 3 HOH A 78 245 159 HOH HOH . E 3 HOH A 79 246 162 HOH HOH . E 3 HOH A 80 247 163 HOH HOH . F 3 HOH B 1 168 3 HOH HOH . F 3 HOH B 2 169 4 HOH HOH . F 3 HOH B 3 170 5 HOH HOH . F 3 HOH B 4 171 8 HOH HOH . F 3 HOH B 5 172 10 HOH HOH . F 3 HOH B 6 173 11 HOH HOH . F 3 HOH B 7 174 12 HOH HOH . F 3 HOH B 8 175 13 HOH HOH . F 3 HOH B 9 176 15 HOH HOH . F 3 HOH B 10 177 17 HOH HOH . F 3 HOH B 11 178 18 HOH HOH . F 3 HOH B 12 179 21 HOH HOH . F 3 HOH B 13 180 23 HOH HOH . F 3 HOH B 14 181 27 HOH HOH . F 3 HOH B 15 182 28 HOH HOH . F 3 HOH B 16 183 29 HOH HOH . F 3 HOH B 17 184 33 HOH HOH . F 3 HOH B 18 185 36 HOH HOH . F 3 HOH B 19 186 37 HOH HOH . F 3 HOH B 20 187 38 HOH HOH . F 3 HOH B 21 188 39 HOH HOH . F 3 HOH B 22 189 40 HOH HOH . F 3 HOH B 23 190 41 HOH HOH . F 3 HOH B 24 191 42 HOH HOH . F 3 HOH B 25 192 44 HOH HOH . F 3 HOH B 26 193 46 HOH HOH . F 3 HOH B 27 194 49 HOH HOH . F 3 HOH B 28 195 50 HOH HOH . F 3 HOH B 29 196 52 HOH HOH . F 3 HOH B 30 197 53 HOH HOH . F 3 HOH B 31 198 56 HOH HOH . F 3 HOH B 32 199 57 HOH HOH . F 3 HOH B 33 200 63 HOH HOH . F 3 HOH B 34 201 67 HOH HOH . F 3 HOH B 35 202 68 HOH HOH . F 3 HOH B 36 203 69 HOH HOH . F 3 HOH B 37 204 71 HOH HOH . F 3 HOH B 38 205 72 HOH HOH . F 3 HOH B 39 206 73 HOH HOH . F 3 HOH B 40 207 74 HOH HOH . F 3 HOH B 41 208 75 HOH HOH . F 3 HOH B 42 209 79 HOH HOH . F 3 HOH B 43 210 83 HOH HOH . F 3 HOH B 44 211 85 HOH HOH . F 3 HOH B 45 212 89 HOH HOH . F 3 HOH B 46 213 91 HOH HOH . F 3 HOH B 47 214 92 HOH HOH . F 3 HOH B 48 215 93 HOH HOH . F 3 HOH B 49 216 96 HOH HOH . F 3 HOH B 50 217 98 HOH HOH . F 3 HOH B 51 218 99 HOH HOH . F 3 HOH B 52 219 100 HOH HOH . F 3 HOH B 53 220 101 HOH HOH . F 3 HOH B 54 221 102 HOH HOH . F 3 HOH B 55 222 106 HOH HOH . F 3 HOH B 56 223 107 HOH HOH . F 3 HOH B 57 224 109 HOH HOH . F 3 HOH B 58 225 112 HOH HOH . F 3 HOH B 59 226 113 HOH HOH . F 3 HOH B 60 227 114 HOH HOH . F 3 HOH B 61 228 117 HOH HOH . F 3 HOH B 62 229 118 HOH HOH . F 3 HOH B 63 230 120 HOH HOH . F 3 HOH B 64 231 123 HOH HOH . F 3 HOH B 65 232 126 HOH HOH . F 3 HOH B 66 233 129 HOH HOH . F 3 HOH B 67 234 130 HOH HOH . F 3 HOH B 68 235 131 HOH HOH . F 3 HOH B 69 236 132 HOH HOH . F 3 HOH B 70 237 134 HOH HOH . F 3 HOH B 71 238 136 HOH HOH . F 3 HOH B 72 239 137 HOH HOH . F 3 HOH B 73 240 145 HOH HOH . F 3 HOH B 74 241 146 HOH HOH . F 3 HOH B 75 242 150 HOH HOH . F 3 HOH B 76 243 151 HOH HOH . F 3 HOH B 77 244 152 HOH HOH . F 3 HOH B 78 245 155 HOH HOH . F 3 HOH B 79 246 156 HOH HOH . F 3 HOH B 80 247 160 HOH HOH . F 3 HOH B 81 248 161 HOH HOH . F 3 HOH B 82 249 164 HOH HOH . F 3 HOH B 83 250 165 HOH HOH . F 3 HOH B 84 251 166 HOH HOH . F 3 HOH B 85 252 167 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 2 _atom_site.Cartn_x 17.102 _atom_site.Cartn_y -23.372 _atom_site.Cartn_z 44.164 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 11.81 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 167 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #