data_1VHB
#
_model_server_result.job_id            ikGbEK6sN_SbCy6_j9pxHw 
_model_server_result.datetime_utc      '2024-10-14 04:26:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vhb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":150}' 
#
_entry.id    1VHB 
#
_exptl.entry_id    1VHB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              616.487 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PROTOPORPHYRIN IX CONTAINING FE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.17 
_cell.angle_gamma         90 
_cell.entry_id            1VHB 
_cell.length_a            63.32 
_cell.length_b            41.42 
_cell.length_c            62.94 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VHB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 85 A HIS 85 1_555 C FE HEM . A HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 B NE2 HIS 85 B HIS 85 1_555 D FE HEM . B HEM 150 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
#
_chem_comp.formula           'C34 H32 Fe N4 O4' 
_chem_comp.formula_weight    616.487 
_chem_comp.id                HEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PROTOPORPHYRIN IX CONTAINING FE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     HEME 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CHA C1A HEM sing 129 n n 
CHA C4D HEM doub 130 n n 
CHA HHA HEM sing 131 n n 
CHB C4A HEM sing 132 n n 
CHB C1B HEM doub 133 n n 
CHB HHB HEM sing 134 n n 
CHC C4B HEM sing 135 n n 
CHC C1C HEM doub 136 n n 
CHC HHC HEM sing 137 n n 
CHD C4C HEM doub 138 n n 
CHD C1D HEM sing 139 n n 
CHD HHD HEM sing 140 n n 
C1A C2A HEM doub 141 n y 
C1A NA HEM sing 142 n y 
C2A C3A HEM sing 143 n y 
C2A CAA HEM sing 144 n n 
C3A C4A HEM doub 145 n y 
C3A CMA HEM sing 146 n n 
C4A NA HEM sing 147 n y 
CMA HMA HEM sing 148 n n 
CMA HMAA HEM sing 149 n n 
CMA HMAB HEM sing 150 n n 
CAA CBA HEM sing 151 n n 
CAA HAA HEM sing 152 n n 
CAA HAAA HEM sing 153 n n 
CBA CGA HEM sing 154 n n 
CBA HBA HEM sing 155 n n 
CBA HBAA HEM sing 156 n n 
CGA O1A HEM doub 157 n n 
CGA O2A HEM sing 158 n n 
C1B C2B HEM sing 159 n n 
C1B NB HEM sing 160 n n 
C2B C3B HEM doub 161 n n 
C2B CMB HEM sing 162 n n 
C3B C4B HEM sing 163 n n 
C3B CAB HEM sing 164 n n 
C4B NB HEM doub 165 n n 
CMB HMB HEM sing 166 n n 
CMB HMBA HEM sing 167 n n 
CMB HMBB HEM sing 168 n n 
CAB CBB HEM doub 169 n n 
CAB HAB HEM sing 170 n n 
CBB HBB HEM sing 171 n n 
CBB HBBA HEM sing 172 n n 
C1C C2C HEM sing 173 n y 
C1C NC HEM sing 174 n y 
C2C C3C HEM doub 175 n y 
C2C CMC HEM sing 176 n n 
C3C C4C HEM sing 177 n y 
C3C CAC HEM sing 178 n n 
C4C NC HEM sing 179 n y 
CMC HMC HEM sing 180 n n 
CMC HMCA HEM sing 181 n n 
CMC HMCB HEM sing 182 n n 
CAC CBC HEM doub 183 n n 
CAC HAC HEM sing 184 n n 
CBC HBC HEM sing 185 n n 
CBC HBCA HEM sing 186 n n 
C1D C2D HEM sing 187 n n 
C1D ND HEM doub 188 n n 
C2D C3D HEM doub 189 n n 
C2D CMD HEM sing 190 n n 
C3D C4D HEM sing 191 n n 
C3D CAD HEM sing 192 n n 
C4D ND HEM sing 193 n n 
CMD HMD HEM sing 194 n n 
CMD HMDA HEM sing 195 n n 
CMD HMDB HEM sing 196 n n 
CAD CBD HEM sing 197 n n 
CAD HAD HEM sing 198 n n 
CAD HADA HEM sing 199 n n 
CBD CGD HEM sing 200 n n 
CBD HBD HEM sing 201 n n 
CBD HBDA HEM sing 202 n n 
CGD O1D HEM doub 203 n n 
CGD O2D HEM sing 204 n n 
O2A H2A HEM sing 205 n n 
O2D H2D HEM sing 206 n n 
FE NA HEM sing 207 n n 
FE NB HEM sing 208 n n 
FE NC HEM sing 209 n n 
FE ND HEM sing 210 n n 
#
_atom_sites.entry_id                     1VHB 
_atom_sites.fract_transf_matrix[1][1]    0.015793 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004579 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.024143 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.016543 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 HEM A 1 150 150 HEM HEM . 
D 2 HEM B 1 150 150 HEM HEM . 
E 3 HOH A 1 151 1 HOH HOH . 
E 3 HOH A 2 152 3 HOH HOH . 
E 3 HOH A 3 153 4 HOH HOH . 
E 3 HOH A 4 154 8 HOH HOH . 
E 3 HOH A 5 155 9 HOH HOH . 
E 3 HOH A 6 156 15 HOH HOH . 
E 3 HOH A 7 157 16 HOH HOH . 
E 3 HOH A 8 158 17 HOH HOH . 
E 3 HOH A 9 159 18 HOH HOH . 
E 3 HOH A 10 160 21 HOH HOH . 
E 3 HOH A 11 161 22 HOH HOH . 
E 3 HOH A 12 162 24 HOH HOH . 
E 3 HOH A 13 163 28 HOH HOH . 
E 3 HOH A 14 164 30 HOH HOH . 
E 3 HOH A 15 165 32 HOH HOH . 
E 3 HOH A 16 166 34 HOH HOH . 
E 3 HOH A 17 167 36 HOH HOH . 
E 3 HOH A 18 168 38 HOH HOH . 
E 3 HOH A 19 169 39 HOH HOH . 
E 3 HOH A 20 170 41 HOH HOH . 
E 3 HOH A 21 171 45 HOH HOH . 
E 3 HOH A 22 172 48 HOH HOH . 
E 3 HOH A 23 173 49 HOH HOH . 
E 3 HOH A 24 174 50 HOH HOH . 
E 3 HOH A 25 175 54 HOH HOH . 
E 3 HOH A 26 176 57 HOH HOH . 
E 3 HOH A 27 177 59 HOH HOH . 
E 3 HOH A 28 178 60 HOH HOH . 
E 3 HOH A 29 179 61 HOH HOH . 
E 3 HOH A 30 180 63 HOH HOH . 
E 3 HOH A 31 181 69 HOH HOH . 
E 3 HOH A 32 182 72 HOH HOH . 
E 3 HOH A 33 183 73 HOH HOH . 
E 3 HOH A 34 184 76 HOH HOH . 
E 3 HOH A 35 185 78 HOH HOH . 
E 3 HOH A 36 186 79 HOH HOH . 
E 3 HOH A 37 187 80 HOH HOH . 
E 3 HOH A 38 188 89 HOH HOH . 
E 3 HOH A 39 189 90 HOH HOH . 
E 3 HOH A 40 190 91 HOH HOH . 
E 3 HOH A 41 191 92 HOH HOH . 
E 3 HOH A 42 192 94 HOH HOH . 
E 3 HOH A 43 193 95 HOH HOH . 
E 3 HOH A 44 194 96 HOH HOH . 
E 3 HOH A 45 195 97 HOH HOH . 
E 3 HOH A 46 196 101 HOH HOH . 
E 3 HOH A 47 197 103 HOH HOH . 
E 3 HOH A 48 198 105 HOH HOH . 
E 3 HOH A 49 199 106 HOH HOH . 
E 3 HOH A 50 200 108 HOH HOH . 
E 3 HOH A 51 201 109 HOH HOH . 
E 3 HOH A 52 202 111 HOH HOH . 
E 3 HOH A 53 203 113 HOH HOH . 
E 3 HOH A 54 204 115 HOH HOH . 
E 3 HOH A 55 205 116 HOH HOH . 
E 3 HOH A 56 206 119 HOH HOH . 
E 3 HOH A 57 207 121 HOH HOH . 
E 3 HOH A 58 208 123 HOH HOH . 
F 3 HOH B 1 151 2 HOH HOH . 
F 3 HOH B 2 152 5 HOH HOH . 
F 3 HOH B 3 153 6 HOH HOH . 
F 3 HOH B 4 154 7 HOH HOH . 
F 3 HOH B 5 155 10 HOH HOH . 
F 3 HOH B 6 156 11 HOH HOH . 
F 3 HOH B 7 157 12 HOH HOH . 
F 3 HOH B 8 158 13 HOH HOH . 
F 3 HOH B 9 159 14 HOH HOH . 
F 3 HOH B 10 160 19 HOH HOH . 
F 3 HOH B 11 161 20 HOH HOH . 
F 3 HOH B 12 162 23 HOH HOH . 
F 3 HOH B 13 163 25 HOH HOH . 
F 3 HOH B 14 164 26 HOH HOH . 
F 3 HOH B 15 165 27 HOH HOH . 
F 3 HOH B 16 166 29 HOH HOH . 
F 3 HOH B 17 167 31 HOH HOH . 
F 3 HOH B 18 168 33 HOH HOH . 
F 3 HOH B 19 169 35 HOH HOH . 
F 3 HOH B 20 170 37 HOH HOH . 
F 3 HOH B 21 171 40 HOH HOH . 
F 3 HOH B 22 172 42 HOH HOH . 
F 3 HOH B 23 173 44 HOH HOH . 
F 3 HOH B 24 174 46 HOH HOH . 
F 3 HOH B 25 175 51 HOH HOH . 
F 3 HOH B 26 176 52 HOH HOH . 
F 3 HOH B 27 177 53 HOH HOH . 
F 3 HOH B 28 178 55 HOH HOH . 
F 3 HOH B 29 179 56 HOH HOH . 
F 3 HOH B 30 180 58 HOH HOH . 
F 3 HOH B 31 181 62 HOH HOH . 
F 3 HOH B 32 182 64 HOH HOH . 
F 3 HOH B 33 183 65 HOH HOH . 
F 3 HOH B 34 184 66 HOH HOH . 
F 3 HOH B 35 185 67 HOH HOH . 
F 3 HOH B 36 186 68 HOH HOH . 
F 3 HOH B 37 187 70 HOH HOH . 
F 3 HOH B 38 188 71 HOH HOH . 
F 3 HOH B 39 189 75 HOH HOH . 
F 3 HOH B 40 190 77 HOH HOH . 
F 3 HOH B 41 191 81 HOH HOH . 
F 3 HOH B 42 192 82 HOH HOH . 
F 3 HOH B 43 193 83 HOH HOH . 
F 3 HOH B 44 194 84 HOH HOH . 
F 3 HOH B 45 195 85 HOH HOH . 
F 3 HOH B 46 196 86 HOH HOH . 
F 3 HOH B 47 197 87 HOH HOH . 
F 3 HOH B 48 198 93 HOH HOH . 
F 3 HOH B 49 199 98 HOH HOH . 
F 3 HOH B 50 200 99 HOH HOH . 
F 3 HOH B 51 201 100 HOH HOH . 
F 3 HOH B 52 202 102 HOH HOH . 
F 3 HOH B 53 203 104 HOH HOH . 
F 3 HOH B 54 204 107 HOH HOH . 
F 3 HOH B 55 205 110 HOH HOH . 
F 3 HOH B 56 206 112 HOH HOH . 
F 3 HOH B 57 207 114 HOH HOH . 
F 3 HOH B 58 208 117 HOH HOH . 
F 3 HOH B 59 209 118 HOH HOH . 
F 3 HOH B 60 210 120 HOH HOH . 
F 3 HOH B 61 211 122 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CHA HEM . . . C 2 46.027 9.692 58.779 1 16.59 ? CHA HEM 150 A 1 
HETATM 2 C CHB HEM . . . C 2 41.496 11.218 59.561 1 12.52 ? CHB HEM 150 A 1 
HETATM 3 C CHC HEM . . . C 2 40.178 6.784 60.821 1 17.44 ? CHC HEM 150 A 1 
HETATM 4 C CHD HEM . . . C 2 44.821 5.472 60.881 1 14.67 ? CHD HEM 150 A 1 
HETATM 5 C C1A HEM . . . C 2 44.931 10.515 58.936 1 16.59 ? C1A HEM 150 A 1 
HETATM 6 C C2A HEM . . . C 2 44.871 11.935 58.693 1 18.87 ? C2A HEM 150 A 1 
HETATM 7 C C3A HEM . . . C 2 43.647 12.384 58.957 1 20.03 ? C3A HEM 150 A 1 
HETATM 8 C C4A HEM . . . C 2 42.852 11.228 59.314 1 12.37 ? C4A HEM 150 A 1 
HETATM 9 C CMA HEM . . . C 2 43.074 13.809 58.765 1 17.17 ? CMA HEM 150 A 1 
HETATM 10 C CAA HEM . . . C 2 46.124 12.687 58.219 1 21.89 ? CAA HEM 150 A 1 
HETATM 11 C CBA HEM . . . C 2 46.193 12.894 56.684 1 34.33 ? CBA HEM 150 A 1 
HETATM 12 C CGA HEM . . . C 2 47.327 13.749 56.162 1 37.01 ? CGA HEM 150 A 1 
HETATM 13 O O1A HEM . . . C 2 47.353 14.978 56.493 1 28.33 ? O1A HEM 150 A 1 
HETATM 14 O O2A HEM . . . C 2 48.116 13.143 55.388 1 51.87 ? O2A HEM 150 A 1 
HETATM 15 C C1B HEM . . . C 2 40.727 10.101 59.818 1 15.09 ? C1B HEM 150 A 1 
HETATM 16 C C2B HEM . . . C 2 39.304 10.111 60.052 1 18.54 ? C2B HEM 150 A 1 
HETATM 17 C C3B HEM . . . C 2 38.953 8.873 60.418 1 13.42 ? C3B HEM 150 A 1 
HETATM 18 C C4B HEM . . . C 2 40.162 8.102 60.436 1 16.32 ? C4B HEM 150 A 1 
HETATM 19 C CMB HEM . . . C 2 38.404 11.36 59.918 1 16.06 ? CMB HEM 150 A 1 
HETATM 20 C CAB HEM . . . C 2 37.573 8.303 60.819 1 17 ? CAB HEM 150 A 1 
HETATM 21 C CBB HEM . . . C 2 36.521 8.6 60.057 1 28.1 ? CBB HEM 150 A 1 
HETATM 22 C C1C HEM . . . C 2 41.349 6.082 60.993 1 14.21 ? C1C HEM 150 A 1 
HETATM 23 C C2C HEM . . . C 2 41.412 4.699 61.478 1 16.78 ? C2C HEM 150 A 1 
HETATM 24 C C3C HEM . . . C 2 42.683 4.304 61.529 1 19.01 ? C3C HEM 150 A 1 
HETATM 25 C C4C HEM . . . C 2 43.447 5.45 61.025 1 14.1 ? C4C HEM 150 A 1 
HETATM 26 C CMC HEM . . . C 2 40.133 3.912 61.789 1 11.76 ? CMC HEM 150 A 1 
HETATM 27 C CAC HEM . . . C 2 43.243 2.91 61.956 1 16.98 ? CAC HEM 150 A 1 
HETATM 28 C CBC HEM . . . C 2 44.232 2.807 62.85 1 23.31 ? CBC HEM 150 A 1 
HETATM 29 C C1D HEM . . . C 2 45.517 6.507 60.293 1 20.57 ? C1D HEM 150 A 1 
HETATM 30 C C2D HEM . . . C 2 46.929 6.438 60.005 1 16.53 ? C2D HEM 150 A 1 
HETATM 31 C C3D HEM . . . C 2 47.254 7.58 59.421 1 21.79 ? C3D HEM 150 A 1 
HETATM 32 C C4D HEM . . . C 2 46.065 8.401 59.278 1 18.98 ? C4D HEM 150 A 1 
HETATM 33 C CMD HEM . . . C 2 47.84 5.21 60.243 1 21.87 ? CMD HEM 150 A 1 
HETATM 34 C CAD HEM . . . C 2 48.644 7.987 58.894 1 24.19 ? CAD HEM 150 A 1 
HETATM 35 C CBD HEM . . . C 2 48.943 7.853 57.387 1 100 ? CBD HEM 150 A 1 
HETATM 36 C CGD HEM . . . C 2 50.36 8.118 56.942 1 100 ? CGD HEM 150 A 1 
HETATM 37 O O1D HEM . . . C 2 50.763 9.315 57.023 1 86.94 ? O1D HEM 150 A 1 
HETATM 38 O O2D HEM . . . C 2 50.99 7.133 56.457 1 88.69 ? O2D HEM 150 A 1 
HETATM 39 N NA HEM . . . C 2 43.676 10.124 59.326 1 14.6 ? NA HEM 150 A 1 
HETATM 40 N NB HEM . . . C 2 41.278 8.839 60.071 1 16.55 ? NB HEM 150 A 1 
HETATM 41 N NC HEM . . . C 2 42.611 6.538 60.732 1 19.02 ? NC HEM 150 A 1 
HETATM 42 N ND HEM . . . C 2 44.98 7.703 59.794 1 17.99 ? ND HEM 150 A 1 
HETATM 43 FE FE HEM . . . C 2 43.093 8.208 59.696 1 16.52 ? FE HEM 150 A 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           6 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           43 
#