data_1VIZ # _model_server_result.job_id 3_1Rf8xmGzWhQKbvTQbeyw _model_server_result.datetime_utc '2024-11-28 03:57:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1viz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":239}' # _entry.id 1VIZ # _exptl.entry_id 1VIZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VIZ _cell.length_a 86.46 _cell.length_b 86.46 _cell.length_c 54.141 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VIZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 145 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PQS monomeric 1 author_and_software_defined_assembly 1 PQS monomeric 1 author_and_software_defined_assembly 2 PISA dimeric 2 software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D 1 1 B,C,E 2 1 B,C,E 3 1 A,D 3 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_654 -y+1,x-y,z-1/3 -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 86.46 0 -18.047 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O ARG 58 B ARG 56 1_555 C NA NA . B NA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? metalc ? metalc2 B O PHE 60 B PHE 58 1_555 C NA NA . B NA 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc3 C NA NA . B NA 239 1_555 E O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.368 ? metalc ? metalc4 C NA NA . B NA 239 1_555 E O HOH . B HOH 364 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VIZ _atom_sites.fract_transf_matrix[1][1] 0.011566 _atom_sites.fract_transf_matrix[1][2] 0.006678 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013355 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01847 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NA B 1 239 1 NA NA . D 3 HOH A 1 239 2 HOH HOH . D 3 HOH A 2 240 3 HOH HOH . D 3 HOH A 3 241 4 HOH HOH . D 3 HOH A 4 242 6 HOH HOH . D 3 HOH A 5 243 7 HOH HOH . D 3 HOH A 6 244 10 HOH HOH . D 3 HOH A 7 245 11 HOH HOH . D 3 HOH A 8 246 15 HOH HOH . D 3 HOH A 9 247 16 HOH HOH . D 3 HOH A 10 248 17 HOH HOH . D 3 HOH A 11 249 18 HOH HOH . D 3 HOH A 12 250 20 HOH HOH . D 3 HOH A 13 251 21 HOH HOH . D 3 HOH A 14 252 22 HOH HOH . D 3 HOH A 15 253 24 HOH HOH . D 3 HOH A 16 254 25 HOH HOH . D 3 HOH A 17 255 27 HOH HOH . D 3 HOH A 18 256 28 HOH HOH . D 3 HOH A 19 257 33 HOH HOH . D 3 HOH A 20 258 34 HOH HOH . D 3 HOH A 21 259 35 HOH HOH . D 3 HOH A 22 260 36 HOH HOH . D 3 HOH A 23 261 37 HOH HOH . D 3 HOH A 24 262 38 HOH HOH . D 3 HOH A 25 263 41 HOH HOH . D 3 HOH A 26 264 42 HOH HOH . D 3 HOH A 27 265 44 HOH HOH . D 3 HOH A 28 266 46 HOH HOH . D 3 HOH A 29 267 49 HOH HOH . D 3 HOH A 30 268 51 HOH HOH . D 3 HOH A 31 269 52 HOH HOH . D 3 HOH A 32 270 55 HOH HOH . D 3 HOH A 33 271 57 HOH HOH . D 3 HOH A 34 272 58 HOH HOH . D 3 HOH A 35 273 59 HOH HOH . D 3 HOH A 36 274 60 HOH HOH . D 3 HOH A 37 275 64 HOH HOH . D 3 HOH A 38 276 68 HOH HOH . D 3 HOH A 39 277 71 HOH HOH . D 3 HOH A 40 278 72 HOH HOH . D 3 HOH A 41 279 73 HOH HOH . D 3 HOH A 42 280 77 HOH HOH . D 3 HOH A 43 281 79 HOH HOH . D 3 HOH A 44 282 80 HOH HOH . D 3 HOH A 45 283 81 HOH HOH . D 3 HOH A 46 284 82 HOH HOH . D 3 HOH A 47 285 83 HOH HOH . D 3 HOH A 48 286 84 HOH HOH . D 3 HOH A 49 287 85 HOH HOH . D 3 HOH A 50 288 86 HOH HOH . D 3 HOH A 51 289 91 HOH HOH . D 3 HOH A 52 290 94 HOH HOH . D 3 HOH A 53 291 95 HOH HOH . D 3 HOH A 54 292 96 HOH HOH . D 3 HOH A 55 293 97 HOH HOH . D 3 HOH A 56 294 99 HOH HOH . D 3 HOH A 57 295 100 HOH HOH . D 3 HOH A 58 296 101 HOH HOH . D 3 HOH A 59 297 103 HOH HOH . D 3 HOH A 60 298 104 HOH HOH . D 3 HOH A 61 299 105 HOH HOH . D 3 HOH A 62 300 106 HOH HOH . D 3 HOH A 63 301 107 HOH HOH . D 3 HOH A 64 302 108 HOH HOH . D 3 HOH A 65 303 109 HOH HOH . D 3 HOH A 66 304 110 HOH HOH . D 3 HOH A 67 305 113 HOH HOH . D 3 HOH A 68 306 116 HOH HOH . D 3 HOH A 69 307 118 HOH HOH . D 3 HOH A 70 308 126 HOH HOH . D 3 HOH A 71 309 128 HOH HOH . D 3 HOH A 72 310 130 HOH HOH . D 3 HOH A 73 311 131 HOH HOH . D 3 HOH A 74 312 132 HOH HOH . D 3 HOH A 75 313 135 HOH HOH . D 3 HOH A 76 314 137 HOH HOH . D 3 HOH A 77 315 138 HOH HOH . D 3 HOH A 78 316 139 HOH HOH . D 3 HOH A 79 317 140 HOH HOH . D 3 HOH A 80 318 141 HOH HOH . D 3 HOH A 81 319 142 HOH HOH . D 3 HOH A 82 320 144 HOH HOH . D 3 HOH A 83 321 145 HOH HOH . D 3 HOH A 84 322 147 HOH HOH . D 3 HOH A 85 323 148 HOH HOH . D 3 HOH A 86 324 149 HOH HOH . D 3 HOH A 87 325 152 HOH HOH . D 3 HOH A 88 326 154 HOH HOH . D 3 HOH A 89 327 155 HOH HOH . D 3 HOH A 90 328 159 HOH HOH . D 3 HOH A 91 329 160 HOH HOH . D 3 HOH A 92 330 162 HOH HOH . D 3 HOH A 93 331 163 HOH HOH . D 3 HOH A 94 332 164 HOH HOH . D 3 HOH A 95 333 165 HOH HOH . D 3 HOH A 96 334 167 HOH HOH . D 3 HOH A 97 335 169 HOH HOH . D 3 HOH A 98 336 173 HOH HOH . D 3 HOH A 99 337 174 HOH HOH . D 3 HOH A 100 338 176 HOH HOH . D 3 HOH A 101 339 177 HOH HOH . D 3 HOH A 102 340 178 HOH HOH . D 3 HOH A 103 341 183 HOH HOH . D 3 HOH A 104 342 184 HOH HOH . D 3 HOH A 105 343 185 HOH HOH . D 3 HOH A 106 344 187 HOH HOH . D 3 HOH A 107 345 190 HOH HOH . D 3 HOH A 108 346 191 HOH HOH . D 3 HOH A 109 347 192 HOH HOH . D 3 HOH A 110 348 193 HOH HOH . D 3 HOH A 111 349 194 HOH HOH . D 3 HOH A 112 350 196 HOH HOH . D 3 HOH A 113 351 198 HOH HOH . D 3 HOH A 114 352 200 HOH HOH . D 3 HOH A 115 353 203 HOH HOH . D 3 HOH A 116 354 204 HOH HOH . D 3 HOH A 117 355 205 HOH HOH . D 3 HOH A 118 356 208 HOH HOH . D 3 HOH A 119 357 209 HOH HOH . D 3 HOH A 120 358 210 HOH HOH . D 3 HOH A 121 359 211 HOH HOH . D 3 HOH A 122 360 212 HOH HOH . D 3 HOH A 123 361 215 HOH HOH . D 3 HOH A 124 362 220 HOH HOH . D 3 HOH A 125 363 222 HOH HOH . D 3 HOH A 126 364 224 HOH HOH . D 3 HOH A 127 365 225 HOH HOH . D 3 HOH A 128 366 226 HOH HOH . D 3 HOH A 129 367 228 HOH HOH . D 3 HOH A 130 368 229 HOH HOH . D 3 HOH A 131 369 230 HOH HOH . D 3 HOH A 132 370 233 HOH HOH . D 3 HOH A 133 371 234 HOH HOH . D 3 HOH A 134 372 239 HOH HOH . D 3 HOH A 135 373 240 HOH HOH . D 3 HOH A 136 374 241 HOH HOH . D 3 HOH A 137 375 242 HOH HOH . D 3 HOH A 138 376 243 HOH HOH . D 3 HOH A 139 377 245 HOH HOH . D 3 HOH A 140 378 246 HOH HOH . D 3 HOH A 141 379 247 HOH HOH . D 3 HOH A 142 380 248 HOH HOH . D 3 HOH A 143 381 249 HOH HOH . D 3 HOH A 144 382 251 HOH HOH . D 3 HOH A 145 383 253 HOH HOH . D 3 HOH A 146 384 254 HOH HOH . D 3 HOH A 147 385 255 HOH HOH . D 3 HOH A 148 386 258 HOH HOH . D 3 HOH A 149 387 259 HOH HOH . D 3 HOH A 150 388 261 HOH HOH . D 3 HOH A 151 389 262 HOH HOH . D 3 HOH A 152 390 263 HOH HOH . D 3 HOH A 153 391 264 HOH HOH . D 3 HOH A 154 392 265 HOH HOH . D 3 HOH A 155 393 269 HOH HOH . D 3 HOH A 156 394 270 HOH HOH . D 3 HOH A 157 395 271 HOH HOH . D 3 HOH A 158 396 272 HOH HOH . D 3 HOH A 159 397 273 HOH HOH . D 3 HOH A 160 398 279 HOH HOH . D 3 HOH A 161 399 280 HOH HOH . D 3 HOH A 162 400 285 HOH HOH . D 3 HOH A 163 401 287 HOH HOH . D 3 HOH A 164 402 288 HOH HOH . D 3 HOH A 165 403 289 HOH HOH . D 3 HOH A 166 404 291 HOH HOH . D 3 HOH A 167 405 293 HOH HOH . D 3 HOH A 168 406 294 HOH HOH . D 3 HOH A 169 407 295 HOH HOH . D 3 HOH A 170 408 297 HOH HOH . D 3 HOH A 171 409 298 HOH HOH . E 3 HOH B 1 240 5 HOH HOH . E 3 HOH B 2 241 8 HOH HOH . E 3 HOH B 3 242 9 HOH HOH . E 3 HOH B 4 243 12 HOH HOH . E 3 HOH B 5 244 13 HOH HOH . E 3 HOH B 6 245 14 HOH HOH . E 3 HOH B 7 246 19 HOH HOH . E 3 HOH B 8 247 23 HOH HOH . E 3 HOH B 9 248 26 HOH HOH . E 3 HOH B 10 249 29 HOH HOH . E 3 HOH B 11 250 30 HOH HOH . E 3 HOH B 12 251 31 HOH HOH . E 3 HOH B 13 252 32 HOH HOH . E 3 HOH B 14 253 39 HOH HOH . E 3 HOH B 15 254 40 HOH HOH . E 3 HOH B 16 255 43 HOH HOH . E 3 HOH B 17 256 45 HOH HOH . E 3 HOH B 18 257 47 HOH HOH . E 3 HOH B 19 258 48 HOH HOH . E 3 HOH B 20 259 50 HOH HOH . E 3 HOH B 21 260 53 HOH HOH . E 3 HOH B 22 261 54 HOH HOH . E 3 HOH B 23 262 56 HOH HOH . E 3 HOH B 24 263 61 HOH HOH . E 3 HOH B 25 264 62 HOH HOH . E 3 HOH B 26 265 63 HOH HOH . E 3 HOH B 27 266 65 HOH HOH . E 3 HOH B 28 267 66 HOH HOH . E 3 HOH B 29 268 67 HOH HOH . E 3 HOH B 30 269 69 HOH HOH . E 3 HOH B 31 270 70 HOH HOH . E 3 HOH B 32 271 74 HOH HOH . E 3 HOH B 33 272 75 HOH HOH . E 3 HOH B 34 273 76 HOH HOH . E 3 HOH B 35 274 78 HOH HOH . E 3 HOH B 36 275 87 HOH HOH . E 3 HOH B 37 276 88 HOH HOH . E 3 HOH B 38 277 89 HOH HOH . E 3 HOH B 39 278 90 HOH HOH . E 3 HOH B 40 279 92 HOH HOH . E 3 HOH B 41 280 93 HOH HOH . E 3 HOH B 42 281 98 HOH HOH . E 3 HOH B 43 282 102 HOH HOH . E 3 HOH B 44 283 111 HOH HOH . E 3 HOH B 45 284 112 HOH HOH . E 3 HOH B 46 285 114 HOH HOH . E 3 HOH B 47 286 115 HOH HOH . E 3 HOH B 48 287 117 HOH HOH . E 3 HOH B 49 288 119 HOH HOH . E 3 HOH B 50 289 120 HOH HOH . E 3 HOH B 51 290 121 HOH HOH . E 3 HOH B 52 291 122 HOH HOH . E 3 HOH B 53 292 123 HOH HOH . E 3 HOH B 54 293 124 HOH HOH . E 3 HOH B 55 294 125 HOH HOH . E 3 HOH B 56 295 127 HOH HOH . E 3 HOH B 57 296 129 HOH HOH . E 3 HOH B 58 297 133 HOH HOH . E 3 HOH B 59 298 134 HOH HOH . E 3 HOH B 60 299 136 HOH HOH . E 3 HOH B 61 300 143 HOH HOH . E 3 HOH B 62 301 146 HOH HOH . E 3 HOH B 63 302 150 HOH HOH . E 3 HOH B 64 303 151 HOH HOH . E 3 HOH B 65 304 153 HOH HOH . E 3 HOH B 66 305 156 HOH HOH . E 3 HOH B 67 306 157 HOH HOH . E 3 HOH B 68 307 158 HOH HOH . E 3 HOH B 69 308 161 HOH HOH . E 3 HOH B 70 309 166 HOH HOH . E 3 HOH B 71 310 168 HOH HOH . E 3 HOH B 72 311 170 HOH HOH . E 3 HOH B 73 312 171 HOH HOH . E 3 HOH B 74 313 172 HOH HOH . E 3 HOH B 75 314 175 HOH HOH . E 3 HOH B 76 315 179 HOH HOH . E 3 HOH B 77 316 180 HOH HOH . E 3 HOH B 78 317 181 HOH HOH . E 3 HOH B 79 318 182 HOH HOH . E 3 HOH B 80 319 186 HOH HOH . E 3 HOH B 81 320 188 HOH HOH . E 3 HOH B 82 321 189 HOH HOH . E 3 HOH B 83 322 195 HOH HOH . E 3 HOH B 84 323 197 HOH HOH . E 3 HOH B 85 324 199 HOH HOH . E 3 HOH B 86 325 201 HOH HOH . E 3 HOH B 87 326 202 HOH HOH . E 3 HOH B 88 327 206 HOH HOH . E 3 HOH B 89 328 207 HOH HOH . E 3 HOH B 90 329 213 HOH HOH . E 3 HOH B 91 330 214 HOH HOH . E 3 HOH B 92 331 216 HOH HOH . E 3 HOH B 93 332 217 HOH HOH . E 3 HOH B 94 333 218 HOH HOH . E 3 HOH B 95 334 219 HOH HOH . E 3 HOH B 96 335 221 HOH HOH . E 3 HOH B 97 336 223 HOH HOH . E 3 HOH B 98 337 227 HOH HOH . E 3 HOH B 99 338 231 HOH HOH . E 3 HOH B 100 339 232 HOH HOH . E 3 HOH B 101 340 235 HOH HOH . E 3 HOH B 102 341 236 HOH HOH . E 3 HOH B 103 342 237 HOH HOH . E 3 HOH B 104 343 238 HOH HOH . E 3 HOH B 105 344 244 HOH HOH . E 3 HOH B 106 345 250 HOH HOH . E 3 HOH B 107 346 252 HOH HOH . E 3 HOH B 108 347 256 HOH HOH . E 3 HOH B 109 348 257 HOH HOH . E 3 HOH B 110 349 260 HOH HOH . E 3 HOH B 111 350 266 HOH HOH . E 3 HOH B 112 351 267 HOH HOH . E 3 HOH B 113 352 268 HOH HOH . E 3 HOH B 114 353 274 HOH HOH . E 3 HOH B 115 354 275 HOH HOH . E 3 HOH B 116 355 276 HOH HOH . E 3 HOH B 117 356 277 HOH HOH . E 3 HOH B 118 357 278 HOH HOH . E 3 HOH B 119 358 281 HOH HOH . E 3 HOH B 120 359 282 HOH HOH . E 3 HOH B 121 360 283 HOH HOH . E 3 HOH B 122 361 284 HOH HOH . E 3 HOH B 123 362 286 HOH HOH . E 3 HOH B 124 363 290 HOH HOH . E 3 HOH B 125 364 292 HOH HOH . E 3 HOH B 126 365 296 HOH HOH . E 3 HOH B 127 366 299 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 81.587 _atom_site.Cartn_y 19.543 _atom_site.Cartn_z 15.726 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 41.66 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 239 _atom_site.auth_asym_id B _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 1 #