data_1VJ3 # _model_server_result.job_id 1U01VOrEK-_9aPDAJ4_ZIg _model_server_result.datetime_utc '2025-04-14 06:24:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vj3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":207}' # _entry.id 1VJ3 # _exptl.entry_id 1VJ3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 745.421 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.74 _cell.angle_gamma 90 _cell.entry_id 1VJ3 _cell.length_a 37.481 _cell.length_b 43.137 _cell.length_c 61.288 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VJ3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C21 H30 N7 O17 P3' _chem_comp.formula_weight 745.421 _chem_comp.id NDP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NDP doub 237 n n PA O2A NDP sing 238 n n PA O5B NDP sing 239 n n PA O3 NDP sing 240 n n O2A HOA2 NDP sing 241 n n O5B C5B NDP sing 242 n n C5B C4B NDP sing 243 n n C5B H51A NDP sing 244 n n C5B H52A NDP sing 245 n n C4B O4B NDP sing 246 n n C4B C3B NDP sing 247 n n C4B H4B NDP sing 248 n n O4B C1B NDP sing 249 n n C3B O3B NDP sing 250 n n C3B C2B NDP sing 251 n n C3B H3B NDP sing 252 n n O3B HO3A NDP sing 253 n n C2B O2B NDP sing 254 n n C2B C1B NDP sing 255 n n C2B H2B NDP sing 256 n n O2B P2B NDP sing 257 n n C1B N9A NDP sing 258 n n C1B H1B NDP sing 259 n n N9A C8A NDP sing 260 n y N9A C4A NDP sing 261 n y C8A N7A NDP doub 262 n y C8A H8A NDP sing 263 n n N7A C5A NDP sing 264 n y C5A C6A NDP sing 265 n y C5A C4A NDP doub 266 n y C6A N6A NDP sing 267 n n C6A N1A NDP doub 268 n y N6A H61A NDP sing 269 n n N6A H62A NDP sing 270 n n N1A C2A NDP sing 271 n y C2A N3A NDP doub 272 n y C2A H2A NDP sing 273 n n N3A C4A NDP sing 274 n y O3 PN NDP sing 275 n n PN O1N NDP doub 276 n n PN O2N NDP sing 277 n n PN O5D NDP sing 278 n n O2N H21N NDP sing 279 n n O5D C5D NDP sing 280 n n C5D C4D NDP sing 281 n n C5D H51N NDP sing 282 n n C5D H52N NDP sing 283 n n C4D O4D NDP sing 284 n n C4D C3D NDP sing 285 n n C4D H4D NDP sing 286 n n O4D C1D NDP sing 287 n n C3D O3D NDP sing 288 n n C3D C2D NDP sing 289 n n C3D H3D NDP sing 290 n n O3D HO3N NDP sing 291 n n C2D O2D NDP sing 292 n n C2D C1D NDP sing 293 n n C2D H2D NDP sing 294 n n O2D HO2N NDP sing 295 n n C1D N1N NDP sing 296 n n C1D H1D NDP sing 297 n n N1N C2N NDP sing 298 n n N1N C6N NDP sing 299 n n C2N C3N NDP doub 300 n n C2N H2N NDP sing 301 n n C3N C7N NDP sing 302 n n C3N C4N NDP sing 303 n n C7N O7N NDP doub 304 n n C7N N7N NDP sing 305 n n N7N H71N NDP sing 306 n n N7N H72N NDP sing 307 n n C4N C5N NDP sing 308 n n C4N H41N NDP sing 309 n n C4N H42N NDP sing 310 n n C5N C6N NDP doub 311 n n C5N H5N NDP sing 312 n n C6N H6N NDP sing 313 n n P2B O1X NDP doub 314 n n P2B O2X NDP sing 315 n n P2B O3X NDP sing 316 n n O2X HOP2 NDP sing 317 n n O3X HOP3 NDP sing 318 n n # _atom_sites.entry_id 1VJ3 _atom_sites.fract_transf_matrix[1][1] 0.02668 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.002212 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.023182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.016372 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NDP A 1 207 207 NDP NDP . C 3 TAB A 1 300 300 TAB TAB . D 4 HOH A 1 209 209 HOH HOH . D 4 HOH A 2 210 210 HOH HOH . D 4 HOH A 3 211 211 HOH HOH . D 4 HOH A 4 212 212 HOH HOH . D 4 HOH A 5 213 213 HOH HOH . D 4 HOH A 6 214 214 HOH HOH . D 4 HOH A 7 215 215 HOH HOH . D 4 HOH A 8 216 216 HOH HOH . D 4 HOH A 9 217 217 HOH HOH . D 4 HOH A 10 218 218 HOH HOH . D 4 HOH A 11 219 219 HOH HOH . D 4 HOH A 12 220 220 HOH HOH . D 4 HOH A 13 221 221 HOH HOH . D 4 HOH A 14 222 222 HOH HOH . D 4 HOH A 15 223 223 HOH HOH . D 4 HOH A 16 224 224 HOH HOH . D 4 HOH A 17 225 225 HOH HOH . D 4 HOH A 18 226 226 HOH HOH . D 4 HOH A 19 227 227 HOH HOH . D 4 HOH A 20 228 228 HOH HOH . D 4 HOH A 21 229 229 HOH HOH . D 4 HOH A 22 230 230 HOH HOH . D 4 HOH A 23 231 231 HOH HOH . D 4 HOH A 24 232 232 HOH HOH . D 4 HOH A 25 233 233 HOH HOH . D 4 HOH A 26 234 234 HOH HOH . D 4 HOH A 27 235 235 HOH HOH . D 4 HOH A 28 236 236 HOH HOH . D 4 HOH A 29 237 237 HOH HOH . D 4 HOH A 30 238 238 HOH HOH . D 4 HOH A 31 239 239 HOH HOH . D 4 HOH A 32 240 240 HOH HOH . D 4 HOH A 33 241 241 HOH HOH . D 4 HOH A 34 242 242 HOH HOH . D 4 HOH A 35 243 243 HOH HOH . D 4 HOH A 36 244 244 HOH HOH . D 4 HOH A 37 245 245 HOH HOH . D 4 HOH A 38 246 246 HOH HOH . D 4 HOH A 39 247 247 HOH HOH . D 4 HOH A 40 248 248 HOH HOH . D 4 HOH A 41 249 249 HOH HOH . D 4 HOH A 42 250 250 HOH HOH . D 4 HOH A 43 251 251 HOH HOH . D 4 HOH A 44 252 252 HOH HOH . D 4 HOH A 45 253 253 HOH HOH . D 4 HOH A 46 254 254 HOH HOH . D 4 HOH A 47 255 255 HOH HOH . D 4 HOH A 48 256 256 HOH HOH . D 4 HOH A 49 257 257 HOH HOH . D 4 HOH A 50 258 258 HOH HOH . D 4 HOH A 51 259 259 HOH HOH . D 4 HOH A 52 260 260 HOH HOH . D 4 HOH A 53 261 261 HOH HOH . D 4 HOH A 54 262 262 HOH HOH . D 4 HOH A 55 263 263 HOH HOH . D 4 HOH A 56 264 264 HOH HOH . D 4 HOH A 57 265 265 HOH HOH . D 4 HOH A 58 266 266 HOH HOH . D 4 HOH A 59 267 267 HOH HOH . D 4 HOH A 60 268 268 HOH HOH . D 4 HOH A 61 269 269 HOH HOH . D 4 HOH A 62 270 270 HOH HOH . D 4 HOH A 63 271 271 HOH HOH . D 4 HOH A 64 272 272 HOH HOH . D 4 HOH A 65 273 273 HOH HOH . D 4 HOH A 66 274 274 HOH HOH . D 4 HOH A 67 275 275 HOH HOH . D 4 HOH A 68 276 276 HOH HOH . D 4 HOH A 69 277 277 HOH HOH . D 4 HOH A 70 278 278 HOH HOH . D 4 HOH A 71 279 279 HOH HOH . D 4 HOH A 72 280 280 HOH HOH . D 4 HOH A 73 281 281 HOH HOH . D 4 HOH A 74 282 282 HOH HOH . D 4 HOH A 75 283 283 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NDP . . . B 2 15.657 9.24 23.585 1 20.94 ? PA NDP 207 A 1 HETATM 2 O O1A NDP . . . B 2 15.701 9.317 22.091 1 20.22 ? O1A NDP 207 A 1 HETATM 3 O O2A NDP . . . B 2 14.428 8.825 24.227 1 22.09 ? O2A NDP 207 A 1 HETATM 4 O O5B NDP . . . B 2 16.201 10.726 24.064 1 23.56 ? O5B NDP 207 A 1 HETATM 5 C C5B NDP . . . B 2 16.704 10.884 25.431 1 22.95 ? C5B NDP 207 A 1 HETATM 6 C C4B NDP . . . B 2 16.381 12.353 25.741 1 23.25 ? C4B NDP 207 A 1 HETATM 7 O O4B NDP . . . B 2 15.224 12.66 25.459 1 23.55 ? O4B NDP 207 A 1 HETATM 8 C C3B NDP . . . B 2 16.379 12.37 27.378 1 24.37 ? C3B NDP 207 A 1 HETATM 9 O O3B NDP . . . B 2 17.862 12.481 27.38 1 24.57 ? O3B NDP 207 A 1 HETATM 10 C C2B NDP . . . B 2 15.662 13.743 27.504 1 25.18 ? C2B NDP 207 A 1 HETATM 11 O O2B NDP . . . B 2 16.519 14.741 27.066 1 27.41 ? O2B NDP 207 A 1 HETATM 12 C C1B NDP . . . B 2 14.562 13.476 26.455 1 24.95 ? C1B NDP 207 A 1 HETATM 13 N N9A NDP . . . B 2 13.439 12.768 27.022 1 26.32 ? N9A NDP 207 A 1 HETATM 14 C C8A NDP . . . B 2 13.047 11.516 26.645 1 27.17 ? C8A NDP 207 A 1 HETATM 15 N N7A NDP . . . B 2 11.985 11.094 27.285 1 25.26 ? N7A NDP 207 A 1 HETATM 16 C C5A NDP . . . B 2 11.753 12.224 28.145 1 26.3 ? C5A NDP 207 A 1 HETATM 17 C C6A NDP . . . B 2 10.657 12.514 29.221 1 28.25 ? C6A NDP 207 A 1 HETATM 18 N N6A NDP . . . B 2 9.736 11.567 29.496 1 27.76 ? N6A NDP 207 A 1 HETATM 19 N N1A NDP . . . B 2 10.726 13.657 29.775 1 29.99 ? N1A NDP 207 A 1 HETATM 20 C C2A NDP . . . B 2 11.703 14.524 29.401 1 28.51 ? C2A NDP 207 A 1 HETATM 21 N N3A NDP . . . B 2 12.673 14.419 28.547 1 27 ? N3A NDP 207 A 1 HETATM 22 C C4A NDP . . . B 2 12.623 13.183 27.963 1 26.12 ? C4A NDP 207 A 1 HETATM 23 O O3 NDP . . . B 2 16.927 8.413 23.998 1 23.27 ? O3 NDP 207 A 1 HETATM 24 P PN NDP . . . B 2 17.435 6.885 24.103 1 24.42 ? PN NDP 207 A 1 HETATM 25 O O1N NDP . . . B 2 16.697 6.208 25.092 1 24.48 ? O1N NDP 207 A 1 HETATM 26 O O2N NDP . . . B 2 18.853 6.95 24.479 1 23.58 ? O2N NDP 207 A 1 HETATM 27 O O5D NDP . . . B 2 17.492 6.246 22.66 1 23.04 ? O5D NDP 207 A 1 HETATM 28 C C5D NDP . . . B 2 18.004 6.69 21.414 1 25.08 ? C5D NDP 207 A 1 HETATM 29 C C4D NDP . . . B 2 18.561 5.394 20.756 1 22.51 ? C4D NDP 207 A 1 HETATM 30 O O4D NDP . . . B 2 17.362 4.577 20.392 1 23.45 ? O4D NDP 207 A 1 HETATM 31 C C3D NDP . . . B 2 19.446 5.493 19.478 1 22.62 ? C3D NDP 207 A 1 HETATM 32 O O3D NDP . . . B 2 20.201 4.256 19.293 1 22.68 ? O3D NDP 207 A 1 HETATM 33 C C2D NDP . . . B 2 18.32 5.484 18.399 1 22.96 ? C2D NDP 207 A 1 HETATM 34 O O2D NDP . . . B 2 18.806 5.127 17.17 1 24.31 ? O2D NDP 207 A 1 HETATM 35 C C1D NDP . . . B 2 17.484 4.322 18.947 1 22.87 ? C1D NDP 207 A 1 HETATM 36 N N1N NDP . . . B 2 16.084 4.236 18.334 1 22.44 ? N1N NDP 207 A 1 HETATM 37 C C2N NDP . . . B 2 15.623 3.112 17.598 1 20.23 ? C2N NDP 207 A 1 HETATM 38 C C3N NDP . . . B 2 14.364 3.206 17.13 1 20.7 ? C3N NDP 207 A 1 HETATM 39 C C7N NDP . . . B 2 13.821 2.018 16.344 1 18.25 ? C7N NDP 207 A 1 HETATM 40 O O7N NDP . . . B 2 12.706 2.08 15.858 1 13.89 ? O7N NDP 207 A 1 HETATM 41 N N7N NDP . . . B 2 14.735 1.05 16.241 1 19.17 ? N7N NDP 207 A 1 HETATM 42 C C4N NDP . . . B 2 13.424 4.418 17.31 1 20.85 ? C4N NDP 207 A 1 HETATM 43 C C5N NDP . . . B 2 14.086 5.497 18.106 1 21.87 ? C5N NDP 207 A 1 HETATM 44 C C6N NDP . . . B 2 15.32 5.401 18.554 1 21.65 ? C6N NDP 207 A 1 HETATM 45 P P2B NDP . . . B 2 17.661 15.798 27.794 1 30.94 ? P2B NDP 207 A 1 HETATM 46 O O1X NDP . . . B 2 18.755 14.919 28.287 1 31.47 ? O1X NDP 207 A 1 HETATM 47 O O2X NDP . . . B 2 16.883 16.265 29.03 1 29.87 ? O2X NDP 207 A 1 HETATM 48 O O3X NDP . . . B 2 17.76 16.887 26.798 1 30.56 ? O3X NDP 207 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 48 #