data_1VJ7
#
_model_server_result.job_id            PVlCCdSgNTrBG5XdxlQtbg 
_model_server_result.datetime_utc      '2024-12-21 15:46:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vj7 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":1997}' 
#
_entry.id    1VJ7 
#
_exptl.entry_id    1VJ7 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              54.938 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'MANGANESE (II) ION' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          109.83 
_cell.angle_gamma         90 
_cell.entry_id            1VJ7 
_cell.length_a            173.49 
_cell.length_b            45.45 
_cell.length_c            126.47 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VJ7 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,H 1 1 
B,E,F,G,I 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 53 A HIS 53 1_555 C MN MN . A MN 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.151 ? 
metalc ? metalc2 A NE2 HIS 77 A HIS 77 1_555 C MN MN . A MN 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc3 A OD1 ASP 144 A ASP 144 1_555 C MN MN . A MN 997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.966 ? 
metalc ? metalc4 C MN MN . A MN 997 1_555 H O HOH . A HOH 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? 
metalc ? metalc5 C MN MN . A MN 997 1_555 H O HOH . A HOH 2100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc6 B NE2 HIS 53 B HIS 53 1_555 E MN MN . B MN 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.939 ? 
metalc ? metalc7 B NE2 HIS 77 B HIS 77 1_555 E MN MN . B MN 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc8 B OD2 ASP 78 B ASP 78 1_555 E MN MN . B MN 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? 
metalc ? metalc9 B OD1 ASP 144 B ASP 144 1_555 E MN MN . B MN 1997 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc10 E MN MN . B MN 1997 1_555 I O HOH . B HOH 2009 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? 
metalc ? metalc11 E MN MN . B MN 1997 1_555 I O HOH . B HOH 2178 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? 
#
_chem_comp.formula           'Mn 2' 
_chem_comp.formula_weight    54.938 
_chem_comp.id                MN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'MANGANESE (II) ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
_atom_sites.entry_id                     1VJ7 
_atom_sites.fract_transf_matrix[1][1]    0.005764 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002079 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.022002 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008405 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MN A 1 997 997 MN MN . 
D 3 GDP A 1 998 998 GDP GDP . 
E 2 MN B 1 1997 1997 MN MN . 
F 3 GDP B 1 1998 1998 GDP GDP . 
G 4 GPX B 1 1999 1999 GPX GPX . 
H 5 HOH A 1 2002 2002 HOH HOH . 
H 5 HOH A 2 2003 2003 HOH HOH . 
H 5 HOH A 3 2006 2006 HOH HOH . 
H 5 HOH A 4 2007 2007 HOH HOH . 
H 5 HOH A 5 2010 2010 HOH HOH . 
H 5 HOH A 6 2011 2011 HOH HOH . 
H 5 HOH A 7 2012 2012 HOH HOH . 
H 5 HOH A 8 2013 2013 HOH HOH . 
H 5 HOH A 9 2014 2014 HOH HOH . 
H 5 HOH A 10 2016 2016 HOH HOH . 
H 5 HOH A 11 2017 2017 HOH HOH . 
H 5 HOH A 12 2018 2018 HOH HOH . 
H 5 HOH A 13 2019 2019 HOH HOH . 
H 5 HOH A 14 2020 2020 HOH HOH . 
H 5 HOH A 15 2022 2022 HOH HOH . 
H 5 HOH A 16 2025 2025 HOH HOH . 
H 5 HOH A 17 2028 2028 HOH HOH . 
H 5 HOH A 18 2030 2030 HOH HOH . 
H 5 HOH A 19 2032 2032 HOH HOH . 
H 5 HOH A 20 2033 2033 HOH HOH . 
H 5 HOH A 21 2035 2035 HOH HOH . 
H 5 HOH A 22 2036 2036 HOH HOH . 
H 5 HOH A 23 2037 2037 HOH HOH . 
H 5 HOH A 24 2038 2038 HOH HOH . 
H 5 HOH A 25 2039 2039 HOH HOH . 
H 5 HOH A 26 2040 2040 HOH HOH . 
H 5 HOH A 27 2041 2041 HOH HOH . 
H 5 HOH A 28 2042 2042 HOH HOH . 
H 5 HOH A 29 2044 2044 HOH HOH . 
H 5 HOH A 30 2046 2046 HOH HOH . 
H 5 HOH A 31 2048 2048 HOH HOH . 
H 5 HOH A 32 2052 2052 HOH HOH . 
H 5 HOH A 33 2053 2053 HOH HOH . 
H 5 HOH A 34 2054 2054 HOH HOH . 
H 5 HOH A 35 2055 2055 HOH HOH . 
H 5 HOH A 36 2058 2058 HOH HOH . 
H 5 HOH A 37 2059 2059 HOH HOH . 
H 5 HOH A 38 2060 2060 HOH HOH . 
H 5 HOH A 39 2061 2061 HOH HOH . 
H 5 HOH A 40 2062 2062 HOH HOH . 
H 5 HOH A 41 2063 2063 HOH HOH . 
H 5 HOH A 42 2065 2065 HOH HOH . 
H 5 HOH A 43 2066 2066 HOH HOH . 
H 5 HOH A 44 2067 2067 HOH HOH . 
H 5 HOH A 45 2068 2068 HOH HOH . 
H 5 HOH A 46 2069 2069 HOH HOH . 
H 5 HOH A 47 2070 2070 HOH HOH . 
H 5 HOH A 48 2071 2071 HOH HOH . 
H 5 HOH A 49 2072 2072 HOH HOH . 
H 5 HOH A 50 2075 2075 HOH HOH . 
H 5 HOH A 51 2076 2076 HOH HOH . 
H 5 HOH A 52 2078 2078 HOH HOH . 
H 5 HOH A 53 2084 2084 HOH HOH . 
H 5 HOH A 54 2086 2086 HOH HOH . 
H 5 HOH A 55 2089 2089 HOH HOH . 
H 5 HOH A 56 2094 2094 HOH HOH . 
H 5 HOH A 57 2095 2095 HOH HOH . 
H 5 HOH A 58 2096 2096 HOH HOH . 
H 5 HOH A 59 2097 2097 HOH HOH . 
H 5 HOH A 60 2098 2098 HOH HOH . 
H 5 HOH A 61 2099 2099 HOH HOH . 
H 5 HOH A 62 2100 2100 HOH HOH . 
H 5 HOH A 63 2102 2102 HOH HOH . 
H 5 HOH A 64 2103 2103 HOH HOH . 
H 5 HOH A 65 2105 2105 HOH HOH . 
H 5 HOH A 66 2106 2106 HOH HOH . 
H 5 HOH A 67 2108 2108 HOH HOH . 
H 5 HOH A 68 2109 2109 HOH HOH . 
H 5 HOH A 69 2113 2113 HOH HOH . 
H 5 HOH A 70 2116 2116 HOH HOH . 
H 5 HOH A 71 2117 2117 HOH HOH . 
H 5 HOH A 72 2118 2118 HOH HOH . 
H 5 HOH A 73 2119 2119 HOH HOH . 
H 5 HOH A 74 2120 2120 HOH HOH . 
H 5 HOH A 75 2121 2121 HOH HOH . 
H 5 HOH A 76 2127 2127 HOH HOH . 
H 5 HOH A 77 2128 2128 HOH HOH . 
H 5 HOH A 78 2132 2132 HOH HOH . 
H 5 HOH A 79 2134 2134 HOH HOH . 
H 5 HOH A 80 2135 2135 HOH HOH . 
H 5 HOH A 81 2136 2136 HOH HOH . 
H 5 HOH A 82 2137 2137 HOH HOH . 
H 5 HOH A 83 2139 2139 HOH HOH . 
H 5 HOH A 84 2142 2142 HOH HOH . 
H 5 HOH A 85 2143 2143 HOH HOH . 
H 5 HOH A 86 2144 2144 HOH HOH . 
H 5 HOH A 87 2145 2145 HOH HOH . 
H 5 HOH A 88 2146 2146 HOH HOH . 
H 5 HOH A 89 2147 2147 HOH HOH . 
H 5 HOH A 90 2148 2148 HOH HOH . 
H 5 HOH A 91 2150 2150 HOH HOH . 
H 5 HOH A 92 2152 2152 HOH HOH . 
H 5 HOH A 93 2153 2153 HOH HOH . 
H 5 HOH A 94 2156 2156 HOH HOH . 
H 5 HOH A 95 2157 2157 HOH HOH . 
H 5 HOH A 96 2158 2158 HOH HOH . 
H 5 HOH A 97 2159 2159 HOH HOH . 
H 5 HOH A 98 2160 2160 HOH HOH . 
H 5 HOH A 99 2161 2161 HOH HOH . 
H 5 HOH A 100 2163 2163 HOH HOH . 
H 5 HOH A 101 2165 2165 HOH HOH . 
H 5 HOH A 102 2166 2166 HOH HOH . 
H 5 HOH A 103 2167 2167 HOH HOH . 
H 5 HOH A 104 2173 2173 HOH HOH . 
H 5 HOH A 105 2174 2174 HOH HOH . 
H 5 HOH A 106 2176 2176 HOH HOH . 
H 5 HOH A 107 2177 2177 HOH HOH . 
H 5 HOH A 108 2182 2182 HOH HOH . 
H 5 HOH A 109 2183 2183 HOH HOH . 
H 5 HOH A 110 2184 2184 HOH HOH . 
H 5 HOH A 111 2185 2185 HOH HOH . 
H 5 HOH A 112 2186 2186 HOH HOH . 
H 5 HOH A 113 2187 2187 HOH HOH . 
H 5 HOH A 114 2188 2188 HOH HOH . 
H 5 HOH A 115 2190 2190 HOH HOH . 
H 5 HOH A 116 2191 2191 HOH HOH . 
H 5 HOH A 117 2192 2192 HOH HOH . 
H 5 HOH A 118 2194 2194 HOH HOH . 
H 5 HOH A 119 2195 2195 HOH HOH . 
H 5 HOH A 120 2196 2196 HOH HOH . 
H 5 HOH A 121 2220 2220 HOH HOH . 
H 5 HOH A 122 2221 2221 HOH HOH . 
H 5 HOH A 123 2222 2222 HOH HOH . 
H 5 HOH A 124 2224 2224 HOH HOH . 
H 5 HOH A 125 2225 2225 HOH HOH . 
H 5 HOH A 126 2226 2226 HOH HOH . 
H 5 HOH A 127 2227 2227 HOH HOH . 
H 5 HOH A 128 2229 2229 HOH HOH . 
H 5 HOH A 129 2234 2234 HOH HOH . 
H 5 HOH A 130 2235 2235 HOH HOH . 
H 5 HOH A 131 2236 2236 HOH HOH . 
H 5 HOH A 132 2238 2238 HOH HOH . 
H 5 HOH A 133 2239 2239 HOH HOH . 
H 5 HOH A 134 2240 2240 HOH HOH . 
H 5 HOH A 135 2241 2241 HOH HOH . 
H 5 HOH A 136 2242 2242 HOH HOH . 
I 5 HOH B 1 2001 2001 HOH HOH . 
I 5 HOH B 2 2004 2004 HOH HOH . 
I 5 HOH B 3 2005 2005 HOH HOH . 
I 5 HOH B 4 2008 2008 HOH HOH . 
I 5 HOH B 5 2009 2009 HOH HOH . 
I 5 HOH B 6 2015 2015 HOH HOH . 
I 5 HOH B 7 2023 2023 HOH HOH . 
I 5 HOH B 8 2024 2024 HOH HOH . 
I 5 HOH B 9 2029 2029 HOH HOH . 
I 5 HOH B 10 2045 2045 HOH HOH . 
I 5 HOH B 11 2049 2049 HOH HOH . 
I 5 HOH B 12 2051 2051 HOH HOH . 
I 5 HOH B 13 2064 2064 HOH HOH . 
I 5 HOH B 14 2073 2073 HOH HOH . 
I 5 HOH B 15 2074 2074 HOH HOH . 
I 5 HOH B 16 2080 2080 HOH HOH . 
I 5 HOH B 17 2081 2081 HOH HOH . 
I 5 HOH B 18 2082 2082 HOH HOH . 
I 5 HOH B 19 2083 2083 HOH HOH . 
I 5 HOH B 20 2085 2085 HOH HOH . 
I 5 HOH B 21 2087 2087 HOH HOH . 
I 5 HOH B 22 2088 2088 HOH HOH . 
I 5 HOH B 23 2091 2091 HOH HOH . 
I 5 HOH B 24 2092 2092 HOH HOH . 
I 5 HOH B 25 2104 2104 HOH HOH . 
I 5 HOH B 26 2110 2110 HOH HOH . 
I 5 HOH B 27 2112 2112 HOH HOH . 
I 5 HOH B 28 2114 2114 HOH HOH . 
I 5 HOH B 29 2115 2115 HOH HOH . 
I 5 HOH B 30 2122 2122 HOH HOH . 
I 5 HOH B 31 2124 2124 HOH HOH . 
I 5 HOH B 32 2125 2125 HOH HOH . 
I 5 HOH B 33 2133 2133 HOH HOH . 
I 5 HOH B 34 2138 2138 HOH HOH . 
I 5 HOH B 35 2149 2149 HOH HOH . 
I 5 HOH B 36 2151 2151 HOH HOH . 
I 5 HOH B 37 2155 2155 HOH HOH . 
I 5 HOH B 38 2162 2162 HOH HOH . 
I 5 HOH B 39 2164 2164 HOH HOH . 
I 5 HOH B 40 2168 2168 HOH HOH . 
I 5 HOH B 41 2169 2169 HOH HOH . 
I 5 HOH B 42 2170 2170 HOH HOH . 
I 5 HOH B 43 2171 2171 HOH HOH . 
I 5 HOH B 44 2172 2172 HOH HOH . 
I 5 HOH B 45 2175 2175 HOH HOH . 
I 5 HOH B 46 2178 2178 HOH HOH . 
I 5 HOH B 47 2179 2179 HOH HOH . 
I 5 HOH B 48 2180 2180 HOH HOH . 
I 5 HOH B 49 2181 2181 HOH HOH . 
I 5 HOH B 50 2189 2189 HOH HOH . 
I 5 HOH B 51 2197 2197 HOH HOH . 
I 5 HOH B 52 2198 2198 HOH HOH . 
I 5 HOH B 53 2199 2199 HOH HOH . 
I 5 HOH B 54 2223 2223 HOH HOH . 
I 5 HOH B 55 2228 2228 HOH HOH . 
I 5 HOH B 56 2230 2230 HOH HOH . 
I 5 HOH B 57 2231 2231 HOH HOH . 
I 5 HOH B 58 2233 2233 HOH HOH . 
I 5 HOH B 59 2237 2237 HOH HOH . 
I 5 HOH B 60 2243 2243 HOH HOH . 
#
_atom_site.group_PDB             HETATM 
_atom_site.id                    1 
_atom_site.type_symbol           MN 
_atom_site.label_atom_id         MN 
_atom_site.label_comp_id         MN 
_atom_site.label_seq_id          . 
_atom_site.label_alt_id          . 
_atom_site.pdbx_PDB_ins_code     . 
_atom_site.label_asym_id         E 
_atom_site.label_entity_id       2 
_atom_site.Cartn_x               169.195 
_atom_site.Cartn_y               3.674 
_atom_site.Cartn_z               97.834 
_atom_site.occupancy             1 
_atom_site.B_iso_or_equiv        32.64 
_atom_site.pdbx_formal_charge    ? 
_atom_site.auth_atom_id          MN 
_atom_site.auth_comp_id          MN 
_atom_site.auth_seq_id           1997 
_atom_site.auth_asym_id          B 
_atom_site.pdbx_PDB_model_num    1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    12 
_model_server_stats.query_time_ms           292 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           1 
#