data_1VJA
#
_model_server_result.job_id            FU84FPndQ88mwLfsXFicFA 
_model_server_result.datetime_utc      '2025-02-18 17:36:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vja 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":300}' 
#
_entry.id    1VJA 
#
_exptl.entry_id    1VJA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              477.534 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N-(BENZYLSULFONYL)SERYL-N~1~-{4-[(Z)-AMINO(IMINO)METHYL]BENZYL}SERINAMIDE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VJA 
_cell.length_a            53.065 
_cell.length_b            55.004 
_cell.length_c            81.924 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VJA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 46 U CYS 42 1_555 A SG CYS 62 U CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf2 A SG CYS 54 U CYS 50 1_555 A SG CYS 125 U CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? 
disulf ? disulf3 A SG CYS 150 U CYS 136 1_555 A SG CYS 219 U CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf4 A SG CYS 182 U CYS 168 1_555 A SG CYS 198 U CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
disulf ? disulf5 A SG CYS 209 U CYS 191 1_555 A SG CYS 237 U CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
#
_chem_comp.formula           'C21 H27 N5 O6 S' 
_chem_comp.formula_weight    477.534 
_chem_comp.id                7IN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N-(BENZYLSULFONYL)SERYL-N~1~-{4-[(Z)-AMINO(IMINO)METHYL]BENZYL}SERINAMIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C3 7IN sing 1 n n 
O2 HO2 7IN sing 2 n n 
C3 C4 7IN sing 3 n n 
C3 H31A 7IN sing 4 n n 
C3 H32 7IN sing 5 n n 
C4 N5 7IN sing 6 n n 
C4 C22 7IN sing 7 n n 
C4 H4 7IN sing 8 n n 
N5 C6 7IN sing 9 n n 
N5 HN5 7IN sing 10 n n 
C6 C7 7IN sing 11 n n 
C6 O21 7IN doub 12 n n 
C7 N8 7IN sing 13 n n 
C7 C19 7IN sing 14 n n 
C7 H7 7IN sing 15 n n 
N8 S9 7IN sing 16 n n 
N8 HN8 7IN sing 17 n n 
S9 C10 7IN sing 18 n n 
S9 O17 7IN doub 19 n n 
S9 O18 7IN doub 20 n n 
C10 C11 7IN sing 21 n n 
C10 H101 7IN sing 22 n n 
C10 H102 7IN sing 23 n n 
C11 C12 7IN sing 24 n y 
C11 C16 7IN doub 25 n y 
C12 C13 7IN doub 26 n y 
C12 H12 7IN sing 27 n n 
C13 C14 7IN sing 28 n y 
C13 H13 7IN sing 29 n n 
C14 C15 7IN doub 30 n y 
C14 H14 7IN sing 31 n n 
C15 C16 7IN sing 32 n y 
C15 H15 7IN sing 33 n n 
C16 H16 7IN sing 34 n n 
C19 O20 7IN sing 35 n n 
C19 H191 7IN sing 36 n n 
C19 H192 7IN sing 37 n n 
O20 H20 7IN sing 38 n n 
C22 O23 7IN doub 39 n n 
C22 N24 7IN sing 40 n n 
N24 C25 7IN sing 41 n n 
N24 H24 7IN sing 42 n n 
C25 C26 7IN sing 43 n n 
C25 H251 7IN sing 44 n n 
C25 H252 7IN sing 45 n n 
C26 C27 7IN sing 46 n y 
C26 C31 7IN doub 47 n y 
C27 C28 7IN doub 48 n y 
C27 H27 7IN sing 49 n n 
C28 C29 7IN sing 50 n y 
C28 H28 7IN sing 51 n n 
C29 C30 7IN doub 52 n y 
C29 C32 7IN sing 53 n n 
C30 C31 7IN sing 54 n y 
C30 H30 7IN sing 55 n n 
C31 H31 7IN sing 56 n n 
C32 N33 7IN doub 57 n n 
C32 N34 7IN sing 58 n n 
N33 H33 7IN sing 59 n n 
N34 H341 7IN sing 60 n n 
N34 H342 7IN sing 61 n n 
#
_atom_sites.entry_id                     1VJA 
_atom_sites.fract_transf_matrix[1][1]    0.018845 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01818 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.012206 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SO4 U 1 401 401 SO4 SO4 . 
C 2 SO4 U 1 403 403 SO4 SO4 . 
D 3 7IN U 1 300 300 7IN 7IN . 
E 4 HOH U 1 404 2 HOH HOH . 
E 4 HOH U 2 405 3 HOH HOH . 
E 4 HOH U 3 406 4 HOH HOH . 
E 4 HOH U 4 407 5 HOH HOH . 
E 4 HOH U 5 408 6 HOH HOH . 
E 4 HOH U 6 409 7 HOH HOH . 
E 4 HOH U 7 410 8 HOH HOH . 
E 4 HOH U 8 411 9 HOH HOH . 
E 4 HOH U 9 412 10 HOH HOH . 
E 4 HOH U 10 413 11 HOH HOH . 
E 4 HOH U 11 414 12 HOH HOH . 
E 4 HOH U 12 415 13 HOH HOH . 
E 4 HOH U 13 416 14 HOH HOH . 
E 4 HOH U 14 417 15 HOH HOH . 
E 4 HOH U 15 418 16 HOH HOH . 
E 4 HOH U 16 419 17 HOH HOH . 
E 4 HOH U 17 420 18 HOH HOH . 
E 4 HOH U 18 421 19 HOH HOH . 
E 4 HOH U 19 422 20 HOH HOH . 
E 4 HOH U 20 423 21 HOH HOH . 
E 4 HOH U 21 424 22 HOH HOH . 
E 4 HOH U 22 425 23 HOH HOH . 
E 4 HOH U 23 426 24 HOH HOH . 
E 4 HOH U 24 427 25 HOH HOH . 
E 4 HOH U 25 428 27 HOH HOH . 
E 4 HOH U 26 429 29 HOH HOH . 
E 4 HOH U 27 430 30 HOH HOH . 
E 4 HOH U 28 431 31 HOH HOH . 
E 4 HOH U 29 432 32 HOH HOH . 
E 4 HOH U 30 433 33 HOH HOH . 
E 4 HOH U 31 434 34 HOH HOH . 
E 4 HOH U 32 435 36 HOH HOH . 
E 4 HOH U 33 436 38 HOH HOH . 
E 4 HOH U 34 437 39 HOH HOH . 
E 4 HOH U 35 438 40 HOH HOH . 
E 4 HOH U 36 439 41 HOH HOH . 
E 4 HOH U 37 440 42 HOH HOH . 
E 4 HOH U 38 441 43 HOH HOH . 
E 4 HOH U 39 442 44 HOH HOH . 
E 4 HOH U 40 443 45 HOH HOH . 
E 4 HOH U 41 444 46 HOH HOH . 
E 4 HOH U 42 445 47 HOH HOH . 
E 4 HOH U 43 446 48 HOH HOH . 
E 4 HOH U 44 447 50 HOH HOH . 
E 4 HOH U 45 448 51 HOH HOH . 
E 4 HOH U 46 449 52 HOH HOH . 
E 4 HOH U 47 450 54 HOH HOH . 
E 4 HOH U 48 451 55 HOH HOH . 
E 4 HOH U 49 452 56 HOH HOH . 
E 4 HOH U 50 453 57 HOH HOH . 
E 4 HOH U 51 454 59 HOH HOH . 
E 4 HOH U 52 455 60 HOH HOH . 
E 4 HOH U 53 456 61 HOH HOH . 
E 4 HOH U 54 457 62 HOH HOH . 
E 4 HOH U 55 458 63 HOH HOH . 
E 4 HOH U 56 459 65 HOH HOH . 
E 4 HOH U 57 460 66 HOH HOH . 
E 4 HOH U 58 461 67 HOH HOH . 
E 4 HOH U 59 462 68 HOH HOH . 
E 4 HOH U 60 463 69 HOH HOH . 
E 4 HOH U 61 464 70 HOH HOH . 
E 4 HOH U 62 465 71 HOH HOH . 
E 4 HOH U 63 466 72 HOH HOH . 
E 4 HOH U 64 467 74 HOH HOH . 
E 4 HOH U 65 468 75 HOH HOH . 
E 4 HOH U 66 469 76 HOH HOH . 
E 4 HOH U 67 470 78 HOH HOH . 
E 4 HOH U 68 471 79 HOH HOH . 
E 4 HOH U 69 472 81 HOH HOH . 
E 4 HOH U 70 473 82 HOH HOH . 
E 4 HOH U 71 474 84 HOH HOH . 
E 4 HOH U 72 475 85 HOH HOH . 
E 4 HOH U 73 476 86 HOH HOH . 
E 4 HOH U 74 477 89 HOH HOH . 
E 4 HOH U 75 478 90 HOH HOH . 
E 4 HOH U 76 479 92 HOH HOH . 
E 4 HOH U 77 480 93 HOH HOH . 
E 4 HOH U 78 481 95 HOH HOH . 
E 4 HOH U 79 482 96 HOH HOH . 
E 4 HOH U 80 483 98 HOH HOH . 
E 4 HOH U 81 484 99 HOH HOH . 
E 4 HOH U 82 485 100 HOH HOH . 
E 4 HOH U 83 486 102 HOH HOH . 
E 4 HOH U 84 487 103 HOH HOH . 
E 4 HOH U 85 488 105 HOH HOH . 
E 4 HOH U 86 489 107 HOH HOH . 
E 4 HOH U 87 490 108 HOH HOH . 
E 4 HOH U 88 491 111 HOH HOH . 
E 4 HOH U 89 492 113 HOH HOH . 
E 4 HOH U 90 493 115 HOH HOH . 
E 4 HOH U 91 494 116 HOH HOH . 
E 4 HOH U 92 495 117 HOH HOH . 
E 4 HOH U 93 496 118 HOH HOH . 
E 4 HOH U 94 497 119 HOH HOH . 
E 4 HOH U 95 498 120 HOH HOH . 
E 4 HOH U 96 499 122 HOH HOH . 
E 4 HOH U 97 500 128 HOH HOH . 
E 4 HOH U 98 501 130 HOH HOH . 
E 4 HOH U 99 502 131 HOH HOH . 
E 4 HOH U 100 503 135 HOH HOH . 
E 4 HOH U 101 504 136 HOH HOH . 
E 4 HOH U 102 505 137 HOH HOH . 
E 4 HOH U 103 506 139 HOH HOH . 
E 4 HOH U 104 507 140 HOH HOH . 
E 4 HOH U 105 508 143 HOH HOH . 
E 4 HOH U 106 509 144 HOH HOH . 
E 4 HOH U 107 510 145 HOH HOH . 
E 4 HOH U 108 511 148 HOH HOH . 
E 4 HOH U 109 512 155 HOH HOH . 
E 4 HOH U 110 513 160 HOH HOH . 
E 4 HOH U 111 514 161 HOH HOH . 
E 4 HOH U 112 515 162 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 O O2 7IN . . . D 3 26.62 11.501 30.333 1 33.43 ? O2 7IN 300 U 1 
HETATM 2 C C3 7IN . . . D 3 27.695 11.414 31.216 1 18.85 ? C3 7IN 300 U 1 
HETATM 3 C C4 7IN . . . D 3 28.939 10.514 31.067 1 19.62 ? C4 7IN 300 U 1 
HETATM 4 N N5 7IN . . . D 3 30.086 11.4 31.05 1 18.77 ? N5 7IN 300 U 1 
HETATM 5 C C6 7IN . . . D 3 31.406 10.917 30.929 1 22.78 ? C6 7IN 300 U 1 
HETATM 6 C C7 7IN . . . D 3 32.515 11.967 30.909 1 21.71 ? C7 7IN 300 U 1 
HETATM 7 N N8 7IN . . . D 3 33.505 11.789 29.886 1 27.73 ? N8 7IN 300 U 1 
HETATM 8 S S9 7IN . . . D 3 33.449 12.088 28.259 1 28.34 ? S9 7IN 300 U 1 
HETATM 9 C C10 7IN . . . D 3 32.099 11.139 27.52 1 28.71 ? C10 7IN 300 U 1 
HETATM 10 C C11 7IN . . . D 3 32.131 11.343 26.008 1 36.06 ? C11 7IN 300 U 1 
HETATM 11 C C12 7IN . . . D 3 31.826 12.611 25.37 1 37.5 ? C12 7IN 300 U 1 
HETATM 12 C C13 7IN . . . D 3 31.881 12.734 23.927 1 38.81 ? C13 7IN 300 U 1 
HETATM 13 C C14 7IN . . . D 3 32.24 11.582 23.141 1 36.71 ? C14 7IN 300 U 1 
HETATM 14 C C15 7IN . . . D 3 32.541 10.324 23.77 1 32.66 ? C15 7IN 300 U 1 
HETATM 15 C C16 7IN . . . D 3 32.487 10.203 25.203 1 33.38 ? C16 7IN 300 U 1 
HETATM 16 O O17 7IN . . . D 3 33.163 13.488 28.153 1 28.87 ? O17 7IN 300 U 1 
HETATM 17 O O18 7IN . . . D 3 34.817 11.692 27.84 1 28.6 ? O18 7IN 300 U 1 
HETATM 18 C C19 7IN . . . D 3 33.341 12.046 32.197 1 25.89 ? C19 7IN 300 U 1 
HETATM 19 O O20 7IN . . . D 3 32.444 12.223 33.266 1 31.45 ? O20 7IN 300 U 1 
HETATM 20 O O21 7IN . . . D 3 31.674 9.732 30.835 1 17.01 ? O21 7IN 300 U 1 
HETATM 21 C C22 7IN . . . D 3 28.814 9.706 29.782 1 19.36 ? C22 7IN 300 U 1 
HETATM 22 O O23 7IN . . . D 3 28.994 10.247 28.711 1 21.73 ? O23 7IN 300 U 1 
HETATM 23 N N24 7IN . . . D 3 28.513 8.362 29.966 1 18.73 ? N24 7IN 300 U 1 
HETATM 24 C C25 7IN . . . D 3 28.38 7.457 28.845 1 17.98 ? C25 7IN 300 U 1 
HETATM 25 C C26 7IN . . . D 3 29.651 6.694 28.484 1 19.43 ? C26 7IN 300 U 1 
HETATM 26 C C27 7IN . . . D 3 29.726 5.293 28.787 1 21.35 ? C27 7IN 300 U 1 
HETATM 27 C C28 7IN . . . D 3 30.893 4.533 28.471 1 20.02 ? C28 7IN 300 U 1 
HETATM 28 C C29 7IN . . . D 3 32.057 5.144 27.831 1 19.87 ? C29 7IN 300 U 1 
HETATM 29 C C30 7IN . . . D 3 32.006 6.563 27.514 1 17.33 ? C30 7IN 300 U 1 
HETATM 30 C C31 7IN . . . D 3 30.81 7.317 27.842 1 18.97 ? C31 7IN 300 U 1 
HETATM 31 C C32 7IN . . . D 3 33.19 4.332 27.545 1 18.38 ? C32 7IN 300 U 1 
HETATM 32 N N33 7IN . . . D 3 33.199 3.017 27.85 1 18.71 ? N33 7IN 300 U 1 
HETATM 33 N N34 7IN . . . D 3 34.33 4.758 26.966 1 18.78 ? N34 7IN 300 U 1 
#
_model_server_stats.io_time_ms              6 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           33 
#