data_1VJC # _model_server_result.job_id n2S2YTJ5DIk6RvGkiWbLOw _model_server_result.datetime_utc '2024-11-07 05:52:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vjc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":417}' # _entry.id 1VJC # _exptl.entry_id 1VJC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 97.6 _cell.angle_gamma 90 _cell.entry_id 1VJC _cell.length_a 36.2 _cell.length_b 106.5 _cell.length_c 51.1 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VJC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 C O1G ATP . A ATP 417 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.411 ? metalc ? metalc2 C O1B ATP . A ATP 417 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc3 C O3B ATP . A ATP 417 1_555 B MG MG . A MG 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.037 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 1VJC _atom_sites.fract_transf_matrix[1][1] 0.027624 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003686 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.00939 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.019743 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG A 1 418 417 MG ATP . C 3 ATP A 1 417 417 ATP ATP . D 4 HOH A 1 419 419 HOH TIP . D 4 HOH A 2 420 420 HOH TIP . D 4 HOH A 3 421 421 HOH TIP . D 4 HOH A 4 422 422 HOH TIP . D 4 HOH A 5 423 423 HOH TIP . D 4 HOH A 6 424 424 HOH TIP . D 4 HOH A 7 425 425 HOH TIP . D 4 HOH A 8 426 426 HOH TIP . D 4 HOH A 9 427 427 HOH TIP . D 4 HOH A 10 428 428 HOH TIP . D 4 HOH A 11 429 429 HOH TIP . D 4 HOH A 12 430 430 HOH TIP . D 4 HOH A 13 431 431 HOH TIP . D 4 HOH A 14 432 432 HOH TIP . D 4 HOH A 15 433 433 HOH TIP . D 4 HOH A 16 434 434 HOH TIP . D 4 HOH A 17 435 435 HOH TIP . D 4 HOH A 18 436 436 HOH TIP . D 4 HOH A 19 437 437 HOH TIP . D 4 HOH A 20 438 438 HOH TIP . D 4 HOH A 21 439 439 HOH TIP . D 4 HOH A 22 440 440 HOH TIP . D 4 HOH A 23 441 441 HOH TIP . D 4 HOH A 24 442 442 HOH TIP . D 4 HOH A 25 443 443 HOH TIP . D 4 HOH A 26 444 444 HOH TIP . D 4 HOH A 27 445 445 HOH TIP . D 4 HOH A 28 446 446 HOH TIP . D 4 HOH A 29 447 447 HOH TIP . D 4 HOH A 30 448 448 HOH TIP . D 4 HOH A 31 449 449 HOH TIP . D 4 HOH A 32 450 450 HOH TIP . D 4 HOH A 33 451 451 HOH TIP . D 4 HOH A 34 452 452 HOH TIP . D 4 HOH A 35 453 453 HOH TIP . D 4 HOH A 36 454 454 HOH TIP . D 4 HOH A 37 455 455 HOH TIP . D 4 HOH A 38 456 456 HOH TIP . D 4 HOH A 39 457 457 HOH TIP . D 4 HOH A 40 458 458 HOH TIP . D 4 HOH A 41 459 459 HOH TIP . D 4 HOH A 42 460 460 HOH TIP . D 4 HOH A 43 461 461 HOH TIP . D 4 HOH A 44 462 462 HOH TIP . D 4 HOH A 45 463 463 HOH TIP . D 4 HOH A 46 464 464 HOH TIP . D 4 HOH A 47 465 465 HOH TIP . D 4 HOH A 48 466 466 HOH TIP . D 4 HOH A 49 467 467 HOH TIP . D 4 HOH A 50 468 468 HOH TIP . D 4 HOH A 51 469 469 HOH TIP . D 4 HOH A 52 470 470 HOH TIP . D 4 HOH A 53 471 471 HOH TIP . D 4 HOH A 54 472 472 HOH TIP . D 4 HOH A 55 473 473 HOH TIP . D 4 HOH A 56 474 474 HOH TIP . D 4 HOH A 57 475 475 HOH TIP . D 4 HOH A 58 476 476 HOH TIP . D 4 HOH A 59 477 477 HOH TIP . D 4 HOH A 60 479 479 HOH TIP . D 4 HOH A 61 480 480 HOH TIP . D 4 HOH A 62 481 481 HOH TIP . D 4 HOH A 63 482 482 HOH TIP . D 4 HOH A 64 483 483 HOH TIP . D 4 HOH A 65 484 484 HOH TIP . D 4 HOH A 66 485 485 HOH TIP . D 4 HOH A 67 486 486 HOH TIP . D 4 HOH A 68 487 487 HOH TIP . D 4 HOH A 69 488 488 HOH TIP . D 4 HOH A 70 489 489 HOH TIP . D 4 HOH A 71 490 490 HOH TIP . D 4 HOH A 72 491 491 HOH TIP . D 4 HOH A 73 492 492 HOH TIP . D 4 HOH A 74 493 493 HOH TIP . D 4 HOH A 75 494 494 HOH TIP . D 4 HOH A 76 495 495 HOH TIP . D 4 HOH A 77 496 496 HOH TIP . D 4 HOH A 78 497 497 HOH TIP . D 4 HOH A 79 498 498 HOH TIP . D 4 HOH A 80 499 499 HOH TIP . D 4 HOH A 81 500 500 HOH TIP . D 4 HOH A 82 501 501 HOH TIP . D 4 HOH A 83 502 502 HOH TIP . D 4 HOH A 84 503 503 HOH TIP . D 4 HOH A 85 504 504 HOH TIP . D 4 HOH A 86 505 505 HOH TIP . D 4 HOH A 87 506 506 HOH TIP . D 4 HOH A 88 507 507 HOH TIP . D 4 HOH A 89 508 508 HOH TIP . D 4 HOH A 90 509 509 HOH TIP . D 4 HOH A 91 510 510 HOH TIP . D 4 HOH A 92 511 511 HOH TIP . D 4 HOH A 93 512 512 HOH TIP . D 4 HOH A 94 513 513 HOH TIP . D 4 HOH A 95 514 514 HOH TIP . D 4 HOH A 96 515 515 HOH TIP . D 4 HOH A 97 516 516 HOH TIP . D 4 HOH A 98 517 517 HOH TIP . D 4 HOH A 99 518 518 HOH TIP . D 4 HOH A 100 519 519 HOH TIP . D 4 HOH A 101 520 520 HOH TIP . D 4 HOH A 102 521 521 HOH TIP . D 4 HOH A 103 522 522 HOH TIP . D 4 HOH A 104 523 523 HOH TIP . D 4 HOH A 105 524 524 HOH TIP . D 4 HOH A 106 525 525 HOH TIP . D 4 HOH A 107 526 526 HOH TIP . D 4 HOH A 108 527 527 HOH TIP . D 4 HOH A 109 528 528 HOH TIP . D 4 HOH A 110 529 529 HOH TIP . D 4 HOH A 111 530 530 HOH TIP . D 4 HOH A 112 531 531 HOH TIP . D 4 HOH A 113 532 532 HOH TIP . D 4 HOH A 114 533 533 HOH TIP . D 4 HOH A 115 534 534 HOH TIP . D 4 HOH A 116 535 535 HOH TIP . D 4 HOH A 117 536 536 HOH TIP . D 4 HOH A 118 537 537 HOH TIP . D 4 HOH A 119 538 538 HOH TIP . D 4 HOH A 120 539 539 HOH TIP . D 4 HOH A 121 540 540 HOH TIP . D 4 HOH A 122 541 541 HOH TIP . D 4 HOH A 123 542 542 HOH TIP . D 4 HOH A 124 543 543 HOH TIP . D 4 HOH A 125 544 544 HOH TIP . D 4 HOH A 126 545 545 HOH TIP . D 4 HOH A 127 546 546 HOH TIP . D 4 HOH A 128 547 547 HOH TIP . D 4 HOH A 129 548 548 HOH TIP . D 4 HOH A 130 549 549 HOH TIP . D 4 HOH A 131 550 550 HOH TIP . D 4 HOH A 132 551 551 HOH TIP . D 4 HOH A 133 552 552 HOH TIP . D 4 HOH A 134 553 553 HOH TIP . D 4 HOH A 135 554 554 HOH TIP . D 4 HOH A 136 555 555 HOH TIP . D 4 HOH A 137 556 556 HOH TIP . D 4 HOH A 138 557 557 HOH TIP . D 4 HOH A 139 558 558 HOH TIP . D 4 HOH A 140 559 559 HOH TIP . D 4 HOH A 141 560 560 HOH TIP . D 4 HOH A 142 561 561 HOH TIP . D 4 HOH A 143 562 562 HOH TIP . D 4 HOH A 144 563 563 HOH TIP . D 4 HOH A 145 564 564 HOH TIP . D 4 HOH A 146 565 565 HOH TIP . D 4 HOH A 147 566 566 HOH TIP . D 4 HOH A 148 567 567 HOH TIP . D 4 HOH A 149 568 568 HOH TIP . D 4 HOH A 150 569 569 HOH TIP . D 4 HOH A 151 570 570 HOH TIP . D 4 HOH A 152 571 571 HOH TIP . D 4 HOH A 153 572 572 HOH TIP . D 4 HOH A 154 573 573 HOH TIP . D 4 HOH A 155 574 574 HOH TIP . D 4 HOH A 156 575 575 HOH TIP . D 4 HOH A 157 576 576 HOH TIP . D 4 HOH A 158 577 577 HOH TIP . D 4 HOH A 159 578 578 HOH TIP . D 4 HOH A 160 579 579 HOH TIP . D 4 HOH A 161 580 580 HOH TIP . D 4 HOH A 162 581 581 HOH TIP . D 4 HOH A 163 582 582 HOH TIP . D 4 HOH A 164 583 583 HOH TIP . D 4 HOH A 165 584 584 HOH TIP . D 4 HOH A 166 585 585 HOH TIP . D 4 HOH A 167 586 586 HOH TIP . D 4 HOH A 168 587 587 HOH TIP . D 4 HOH A 169 588 588 HOH TIP . D 4 HOH A 170 589 589 HOH TIP . D 4 HOH A 171 590 590 HOH TIP . D 4 HOH A 172 591 591 HOH TIP . D 4 HOH A 173 592 592 HOH TIP . D 4 HOH A 174 593 593 HOH TIP . D 4 HOH A 175 594 594 HOH TIP . D 4 HOH A 176 595 595 HOH TIP . D 4 HOH A 177 596 596 HOH TIP . D 4 HOH A 178 597 597 HOH TIP . D 4 HOH A 179 598 598 HOH TIP . D 4 HOH A 180 599 599 HOH TIP . D 4 HOH A 181 600 600 HOH TIP . D 4 HOH A 182 601 601 HOH TIP . D 4 HOH A 183 602 602 HOH TIP . D 4 HOH A 184 604 604 HOH TIP . D 4 HOH A 185 606 606 HOH TIP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 8.829 -0.74 23.519 1 67.62 ? PG ATP 417 A 1 HETATM 2 O O1G ATP . . . C 3 10.284 -0.601 23.823 1 65.56 ? O1G ATP 417 A 1 HETATM 3 O O2G ATP . . . C 3 8.337 -2.13 23.444 1 66.47 ? O2G ATP 417 A 1 HETATM 4 O O3G ATP . . . C 3 7.97 0.225 24.274 1 64.46 ? O3G ATP 417 A 1 HETATM 5 P PB ATP . . . C 3 9.394 0.897 21.21 1 64.82 ? PB ATP 417 A 1 HETATM 6 O O1B ATP . . . C 3 10.833 0.78 21.373 1 63.43 ? O1B ATP 417 A 1 HETATM 7 O O2B ATP . . . C 3 8.857 0.983 19.893 1 62.43 ? O2B ATP 417 A 1 HETATM 8 O O3B ATP . . . C 3 8.719 -0.317 21.983 1 64.6 ? O3B ATP 417 A 1 HETATM 9 P PA ATP . . . C 3 9.324 3.638 22.494 1 57.78 ? PA ATP 417 A 1 HETATM 10 O O1A ATP . . . C 3 10.637 3.652 23.15 1 56.05 ? O1A ATP 417 A 1 HETATM 11 O O2A ATP . . . C 3 9.117 4.486 21.339 1 57.68 ? O2A ATP 417 A 1 HETATM 12 O O3A ATP . . . C 3 8.918 2.159 22.205 1 61.39 ? O3A ATP 417 A 1 HETATM 13 O O5' ATP . . . C 3 8.325 3.939 23.521 1 53.68 ? O5' ATP 417 A 1 HETATM 14 C C5' ATP . . . C 3 6.916 3.986 23.233 1 44.63 ? C5' ATP 417 A 1 HETATM 15 C C4' ATP . . . C 3 6.144 3.776 24.491 1 38.62 ? C4' ATP 417 A 1 HETATM 16 O O4' ATP . . . C 3 6.398 4.933 25.327 1 35.47 ? O4' ATP 417 A 1 HETATM 17 C C3' ATP . . . C 3 4.649 3.763 24.3 1 36.27 ? C3' ATP 417 A 1 HETATM 18 O O3' ATP . . . C 3 4.156 2.435 24.544 1 30.01 ? O3' ATP 417 A 1 HETATM 19 C C2' ATP . . . C 3 4.116 4.794 25.271 1 31.26 ? C2' ATP 417 A 1 HETATM 20 O O2' ATP . . . C 3 3.038 4.338 26.078 1 32.36 ? O2' ATP 417 A 1 HETATM 21 C C1' ATP . . . C 3 5.298 5.075 26.216 1 32.19 ? C1' ATP 417 A 1 HETATM 22 N N9 ATP . . . C 3 5.258 6.456 26.78 1 25.86 ? N9 ATP 417 A 1 HETATM 23 C C8 ATP . . . C 3 5.037 7.649 26.128 1 22.26 ? C8 ATP 417 A 1 HETATM 24 N N7 ATP . . . C 3 5.047 8.7 26.88 1 21.07 ? N7 ATP 417 A 1 HETATM 25 C C5 ATP . . . C 3 5.297 8.172 28.132 1 22.54 ? C5 ATP 417 A 1 HETATM 26 C C6 ATP . . . C 3 5.431 8.77 29.417 1 17.69 ? C6 ATP 417 A 1 HETATM 27 N N6 ATP . . . C 3 5.313 10.086 29.57 1 18.52 ? N6 ATP 417 A 1 HETATM 28 N N1 ATP . . . C 3 5.681 7.969 30.491 1 19.24 ? N1 ATP 417 A 1 HETATM 29 C C2 ATP . . . C 3 5.794 6.644 30.318 1 14.59 ? C2 ATP 417 A 1 HETATM 30 N N3 ATP . . . C 3 5.684 5.951 29.163 1 24.14 ? N3 ATP 417 A 1 HETATM 31 C C4 ATP . . . C 3 5.431 6.797 28.088 1 22.8 ? C4 ATP 417 A 1 # _model_server_stats.io_time_ms 35 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 31 #