data_1VJF
#
_model_server_result.job_id            3IAcWA0uSaTO3rvRCUnlRA 
_model_server_result.datetime_utc      '2024-11-14 01:32:09' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vjf 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":170}' 
#
_entry.id    1VJF 
#
_exptl.entry_id    1VJF 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VJF 
_cell.length_a            50.891 
_cell.length_b            50.891 
_cell.length_c            121.43 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VJF 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 13 A MSE 1 1_555 A N LYS 14 A LYS 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C ALA 50 A ALA 38 1_555 A N MSE 51 A MSE 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 A C MSE 51 A MSE 39 1_555 A N PRO 52 A PRO 40 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale4 A C GLU 99 A GLU 87 1_555 A N MSE 100 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale5 A C MSE 100 A MSE 88 1_555 A N MSE 101 A MSE 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale6 A C MSE 101 A MSE 89 1_555 A N LEU 102 A LEU 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale7 A C PRO 168 A PRO 156 1_555 A N MSE 169 A MSE 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? 
covale ? covale8 A C MSE 169 A MSE 157 1_555 A N ILE 170 A ILE 158 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 A C ALA 175 A ALA 163 1_555 A N MSE 176 A MSE 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? 
covale ? covale10 A C MSE 176 A MSE 164 1_555 A N GLU 177 A GLU 165 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 116 n n 
C1 C2 GOL sing 117 n n 
C1 H11 GOL sing 118 n n 
C1 H12 GOL sing 119 n n 
O1 HO1 GOL sing 120 n n 
C2 O2 GOL sing 121 n n 
C2 C3 GOL sing 122 n n 
C2 H2 GOL sing 123 n n 
O2 HO2 GOL sing 124 n n 
C3 O3 GOL sing 125 n n 
C3 H31 GOL sing 126 n n 
C3 H32 GOL sing 127 n n 
O3 HO3 GOL sing 128 n n 
#
_atom_sites.entry_id                     1VJF 
_atom_sites.fract_transf_matrix[1][1]    0.01965 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01965 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008235 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 CL A 1 169 1 CL CL . 
C 3 GOL A 1 170 2 GOL GOL . 
D 3 GOL A 1 171 3 GOL GOL . 
E 4 HOH A 1 172 4 HOH HOH . 
E 4 HOH A 2 173 5 HOH HOH . 
E 4 HOH A 3 174 6 HOH HOH . 
E 4 HOH A 4 175 7 HOH HOH . 
E 4 HOH A 5 176 8 HOH HOH . 
E 4 HOH A 6 177 9 HOH HOH . 
E 4 HOH A 7 178 10 HOH HOH . 
E 4 HOH A 8 179 11 HOH HOH . 
E 4 HOH A 9 180 12 HOH HOH . 
E 4 HOH A 10 181 13 HOH HOH . 
E 4 HOH A 11 182 14 HOH HOH . 
E 4 HOH A 12 183 15 HOH HOH . 
E 4 HOH A 13 184 16 HOH HOH . 
E 4 HOH A 14 185 17 HOH HOH . 
E 4 HOH A 15 186 18 HOH HOH . 
E 4 HOH A 16 187 19 HOH HOH . 
E 4 HOH A 17 188 20 HOH HOH . 
E 4 HOH A 18 189 21 HOH HOH . 
E 4 HOH A 19 190 22 HOH HOH . 
E 4 HOH A 20 191 23 HOH HOH . 
E 4 HOH A 21 192 24 HOH HOH . 
E 4 HOH A 22 193 25 HOH HOH . 
E 4 HOH A 23 194 26 HOH HOH . 
E 4 HOH A 24 195 27 HOH HOH . 
E 4 HOH A 25 196 28 HOH HOH . 
E 4 HOH A 26 197 29 HOH HOH . 
E 4 HOH A 27 198 30 HOH HOH . 
E 4 HOH A 28 199 31 HOH HOH . 
E 4 HOH A 29 200 32 HOH HOH . 
E 4 HOH A 30 201 33 HOH HOH . 
E 4 HOH A 31 202 34 HOH HOH . 
E 4 HOH A 32 203 35 HOH HOH . 
E 4 HOH A 33 204 36 HOH HOH . 
E 4 HOH A 34 205 37 HOH HOH . 
E 4 HOH A 35 206 38 HOH HOH . 
E 4 HOH A 36 207 39 HOH HOH . 
E 4 HOH A 37 208 40 HOH HOH . 
E 4 HOH A 38 209 41 HOH HOH . 
E 4 HOH A 39 210 42 HOH HOH . 
E 4 HOH A 40 211 43 HOH HOH . 
E 4 HOH A 41 212 44 HOH HOH . 
E 4 HOH A 42 213 45 HOH HOH . 
E 4 HOH A 43 214 46 HOH HOH . 
E 4 HOH A 44 215 47 HOH HOH . 
E 4 HOH A 45 216 48 HOH HOH . 
E 4 HOH A 46 217 49 HOH HOH . 
E 4 HOH A 47 218 50 HOH HOH . 
E 4 HOH A 48 219 51 HOH HOH . 
E 4 HOH A 49 220 52 HOH HOH . 
E 4 HOH A 50 221 53 HOH HOH . 
E 4 HOH A 51 222 54 HOH HOH . 
E 4 HOH A 52 223 55 HOH HOH . 
E 4 HOH A 53 224 56 HOH HOH . 
E 4 HOH A 54 225 57 HOH HOH . 
E 4 HOH A 55 226 58 HOH HOH . 
E 4 HOH A 56 227 59 HOH HOH . 
E 4 HOH A 57 228 60 HOH HOH . 
E 4 HOH A 58 229 61 HOH HOH . 
E 4 HOH A 59 230 62 HOH HOH . 
E 4 HOH A 60 231 63 HOH HOH . 
E 4 HOH A 61 232 64 HOH HOH . 
E 4 HOH A 62 233 65 HOH HOH . 
E 4 HOH A 63 234 66 HOH HOH . 
E 4 HOH A 64 235 67 HOH HOH . 
E 4 HOH A 65 236 68 HOH HOH . 
E 4 HOH A 66 237 69 HOH HOH . 
E 4 HOH A 67 238 70 HOH HOH . 
E 4 HOH A 68 239 71 HOH HOH . 
E 4 HOH A 69 240 72 HOH HOH . 
E 4 HOH A 70 241 73 HOH HOH . 
E 4 HOH A 71 242 74 HOH HOH . 
E 4 HOH A 72 243 75 HOH HOH . 
E 4 HOH A 73 244 76 HOH HOH . 
E 4 HOH A 74 245 77 HOH HOH . 
E 4 HOH A 75 246 78 HOH HOH . 
E 4 HOH A 76 247 79 HOH HOH . 
E 4 HOH A 77 248 80 HOH HOH . 
E 4 HOH A 78 249 81 HOH HOH . 
E 4 HOH A 79 250 82 HOH HOH . 
E 4 HOH A 80 251 83 HOH HOH . 
E 4 HOH A 81 252 84 HOH HOH . 
E 4 HOH A 82 253 85 HOH HOH . 
E 4 HOH A 83 254 86 HOH HOH . 
E 4 HOH A 84 255 87 HOH HOH . 
E 4 HOH A 85 256 88 HOH HOH . 
E 4 HOH A 86 257 89 HOH HOH . 
E 4 HOH A 87 258 90 HOH HOH . 
E 4 HOH A 88 259 91 HOH HOH . 
E 4 HOH A 89 260 92 HOH HOH . 
E 4 HOH A 90 261 93 HOH HOH . 
E 4 HOH A 91 262 94 HOH HOH . 
E 4 HOH A 92 263 95 HOH HOH . 
E 4 HOH A 93 264 96 HOH HOH . 
E 4 HOH A 94 265 97 HOH HOH . 
E 4 HOH A 95 266 98 HOH HOH . 
E 4 HOH A 96 267 99 HOH HOH . 
E 4 HOH A 97 268 100 HOH HOH . 
E 4 HOH A 98 269 101 HOH HOH . 
E 4 HOH A 99 270 102 HOH HOH . 
E 4 HOH A 100 271 103 HOH HOH . 
E 4 HOH A 101 272 104 HOH HOH . 
E 4 HOH A 102 273 105 HOH HOH . 
E 4 HOH A 103 274 106 HOH HOH . 
E 4 HOH A 104 275 107 HOH HOH . 
E 4 HOH A 105 276 108 HOH HOH . 
E 4 HOH A 106 277 109 HOH HOH . 
E 4 HOH A 107 278 110 HOH HOH . 
E 4 HOH A 108 279 111 HOH HOH . 
E 4 HOH A 109 280 112 HOH HOH . 
E 4 HOH A 110 281 113 HOH HOH . 
E 4 HOH A 111 282 114 HOH HOH . 
E 4 HOH A 112 283 115 HOH HOH . 
E 4 HOH A 113 284 116 HOH HOH . 
E 4 HOH A 114 285 117 HOH HOH . 
E 4 HOH A 115 286 118 HOH HOH . 
E 4 HOH A 116 287 119 HOH HOH . 
E 4 HOH A 117 288 120 HOH HOH . 
E 4 HOH A 118 289 121 HOH HOH . 
E 4 HOH A 119 290 122 HOH HOH . 
E 4 HOH A 120 291 123 HOH HOH . 
E 4 HOH A 121 292 124 HOH HOH . 
E 4 HOH A 122 293 125 HOH HOH . 
E 4 HOH A 123 294 126 HOH HOH . 
E 4 HOH A 124 295 127 HOH HOH . 
E 4 HOH A 125 296 128 HOH HOH . 
E 4 HOH A 126 297 129 HOH HOH . 
E 4 HOH A 127 298 130 HOH HOH . 
E 4 HOH A 128 299 131 HOH HOH . 
E 4 HOH A 129 300 132 HOH HOH . 
E 4 HOH A 130 301 133 HOH HOH . 
E 4 HOH A 131 302 134 HOH HOH . 
E 4 HOH A 132 303 135 HOH HOH . 
E 4 HOH A 133 304 136 HOH HOH . 
E 4 HOH A 134 305 137 HOH HOH . 
E 4 HOH A 135 306 138 HOH HOH . 
E 4 HOH A 136 307 139 HOH HOH . 
E 4 HOH A 137 308 140 HOH HOH . 
E 4 HOH A 138 309 141 HOH HOH . 
E 4 HOH A 139 310 142 HOH HOH . 
E 4 HOH A 140 311 143 HOH HOH . 
E 4 HOH A 141 312 144 HOH HOH . 
E 4 HOH A 142 313 145 HOH HOH . 
E 4 HOH A 143 314 146 HOH HOH . 
E 4 HOH A 144 315 147 HOH HOH . 
E 4 HOH A 145 316 148 HOH HOH . 
E 4 HOH A 146 317 149 HOH HOH . 
E 4 HOH A 147 318 150 HOH HOH . 
E 4 HOH A 148 319 151 HOH HOH . 
E 4 HOH A 149 320 152 HOH HOH . 
E 4 HOH A 150 321 153 HOH HOH . 
E 4 HOH A 151 322 154 HOH HOH . 
E 4 HOH A 152 323 155 HOH HOH . 
E 4 HOH A 153 324 156 HOH HOH . 
E 4 HOH A 154 325 157 HOH HOH . 
E 4 HOH A 155 326 158 HOH HOH . 
E 4 HOH A 156 327 159 HOH HOH . 
E 4 HOH A 157 328 160 HOH HOH . 
E 4 HOH A 158 329 161 HOH HOH . 
E 4 HOH A 159 330 162 HOH HOH . 
E 4 HOH A 160 331 163 HOH HOH . 
E 4 HOH A 161 332 164 HOH HOH . 
E 4 HOH A 162 333 165 HOH HOH . 
E 4 HOH A 163 334 166 HOH HOH . 
E 4 HOH A 164 335 167 HOH HOH . 
E 4 HOH A 165 336 168 HOH HOH . 
E 4 HOH A 166 337 169 HOH HOH . 
E 4 HOH A 167 338 170 HOH HOH . 
E 4 HOH A 168 339 172 HOH HOH . 
E 4 HOH A 169 340 173 HOH HOH . 
E 4 HOH A 170 341 174 HOH HOH . 
E 4 HOH A 171 342 175 HOH HOH . 
E 4 HOH A 172 343 176 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 5.929 19.998 71.62 1 28.05 ? C1 GOL 170 A 1 
HETATM 2 O O1 GOL . . . C 3 6.343 20.192 70.27 1 26.72 ? O1 GOL 170 A 1 
HETATM 3 C C2 GOL . . . C 3 6.965 19.167 72.363 1 26.93 ? C2 GOL 170 A 1 
HETATM 4 O O2 GOL . . . C 3 6.959 17.834 71.865 1 26.88 ? O2 GOL 170 A 1 
HETATM 5 C C3 GOL . . . C 3 6.732 19.278 73.887 1 25.74 ? C3 GOL 170 A 1 
HETATM 6 O O3 GOL . . . C 3 7.113 20.592 74.362 1 16.37 ? O3 GOL 170 A 1 
#
_model_server_stats.io_time_ms              96 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           250 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#