data_1VJY # _model_server_result.job_id q0RB4iujVlG5jfVESDgKHg _model_server_result.datetime_utc '2024-11-22 01:40:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vjy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":999}' # _entry.id 1VJY # _exptl.entry_id 1VJY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 289.335 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[5-(6-METHYLPYRIDIN-2-YL)-2,3-DIHYDRO-1H-PYRAZOL-4-YL]-1,5-NAPHTHYRIDINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VJY _cell.length_a 42.069 _cell.length_b 75.775 _cell.length_c 89.589 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VJY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H15 N5' _chem_comp.formula_weight 289.335 _chem_comp.id 460 _chem_comp.mon_nstd_flag . _chem_comp.name 2-[5-(6-METHYLPYRIDIN-2-YL)-2,3-DIHYDRO-1H-PYRAZOL-4-YL]-1,5-NAPHTHYRIDINE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'NAPHTHYRIDINE INHIBITOR' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 460 sing 1 n n C1 H11 460 sing 2 n n C1 H12 460 sing 3 n n C1 H13 460 sing 4 n n C2 C3 460 doub 5 n y C2 N7 460 sing 6 n y C3 C4 460 sing 7 n y C3 H3 460 sing 8 n n C4 C5 460 doub 9 n y C4 H4 460 sing 10 n n C5 C6 460 sing 11 n y C5 H5 460 sing 12 n n C6 N7 460 doub 13 n y C6 C8 460 sing 14 n n C8 N9 460 sing 15 n n C8 C13 460 doub 16 n n N9 N10 460 sing 17 n n N9 HN9 460 sing 18 n n N10 C12 460 sing 19 n n N10 H10 460 sing 20 n n C12 C13 460 sing 21 n n C12 H121 460 sing 22 n n C12 H122 460 sing 23 n n C13 C14 460 sing 24 n n C14 C15 460 doub 25 n y C14 N23 460 sing 26 n y C15 C16 460 sing 27 n y C15 H15 460 sing 28 n n C16 C17 460 doub 29 n y C16 H16 460 sing 30 n n C17 N18 460 sing 31 n y C17 C22 460 sing 32 n y N18 C19 460 doub 33 n y C19 C20 460 sing 34 n y C19 H19 460 sing 35 n n C20 C21 460 doub 36 n y C20 H20 460 sing 37 n n C21 C22 460 sing 38 n y C21 H21 460 sing 39 n n C22 N23 460 doub 40 n y # _atom_sites.entry_id 1VJY _atom_sites.fract_transf_matrix[1][1] 0.02377 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013197 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011162 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 460 A 1 999 999 460 460 . C 3 HOH A 1 1000 1000 HOH HOH . C 3 HOH A 2 1001 1001 HOH HOH . C 3 HOH A 3 1002 1002 HOH HOH . C 3 HOH A 4 1003 1003 HOH HOH . C 3 HOH A 5 1004 1004 HOH HOH . C 3 HOH A 6 1005 1005 HOH HOH . C 3 HOH A 7 1006 1006 HOH HOH . C 3 HOH A 8 1007 1007 HOH HOH . C 3 HOH A 9 1008 1008 HOH HOH . C 3 HOH A 10 1009 1009 HOH HOH . C 3 HOH A 11 1010 1010 HOH HOH . C 3 HOH A 12 1011 1011 HOH HOH . C 3 HOH A 13 1012 1012 HOH HOH . C 3 HOH A 14 1013 1013 HOH HOH . C 3 HOH A 15 1014 1014 HOH HOH . C 3 HOH A 16 1015 1015 HOH HOH . C 3 HOH A 17 1016 1016 HOH HOH . C 3 HOH A 18 1017 1017 HOH HOH . C 3 HOH A 19 1018 1018 HOH HOH . C 3 HOH A 20 1019 1019 HOH HOH . C 3 HOH A 21 1020 1020 HOH HOH . C 3 HOH A 22 1021 1021 HOH HOH . C 3 HOH A 23 1022 1022 HOH HOH . C 3 HOH A 24 1023 1023 HOH HOH . C 3 HOH A 25 1024 1024 HOH HOH . C 3 HOH A 26 1025 1025 HOH HOH . C 3 HOH A 27 1026 1026 HOH HOH . C 3 HOH A 28 1027 1027 HOH HOH . C 3 HOH A 29 1028 1028 HOH HOH . C 3 HOH A 30 1029 1029 HOH HOH . C 3 HOH A 31 1030 1030 HOH HOH . C 3 HOH A 32 1031 1031 HOH HOH . C 3 HOH A 33 1032 1032 HOH HOH . C 3 HOH A 34 1033 1033 HOH HOH . C 3 HOH A 35 1034 1034 HOH HOH . C 3 HOH A 36 1035 1035 HOH HOH . C 3 HOH A 37 1036 1036 HOH HOH . C 3 HOH A 38 1037 1037 HOH HOH . C 3 HOH A 39 1038 1038 HOH HOH . C 3 HOH A 40 1039 1039 HOH HOH . C 3 HOH A 41 1040 1040 HOH HOH . C 3 HOH A 42 1041 1041 HOH HOH . C 3 HOH A 43 1042 1042 HOH HOH . C 3 HOH A 44 1043 1043 HOH HOH . C 3 HOH A 45 1044 1044 HOH HOH . C 3 HOH A 46 1045 1045 HOH HOH . C 3 HOH A 47 1046 1046 HOH HOH . C 3 HOH A 48 1047 1047 HOH HOH . C 3 HOH A 49 1048 1048 HOH HOH . C 3 HOH A 50 1049 1049 HOH HOH . C 3 HOH A 51 1050 1050 HOH HOH . C 3 HOH A 52 1051 1051 HOH HOH . C 3 HOH A 53 1052 1052 HOH HOH . C 3 HOH A 54 1053 1053 HOH HOH . C 3 HOH A 55 1054 1054 HOH HOH . C 3 HOH A 56 1055 1055 HOH HOH . C 3 HOH A 57 1056 1056 HOH HOH . C 3 HOH A 58 1057 1057 HOH HOH . C 3 HOH A 59 1058 1058 HOH HOH . C 3 HOH A 60 1059 1059 HOH HOH . C 3 HOH A 61 1060 1060 HOH HOH . C 3 HOH A 62 1061 1061 HOH HOH . C 3 HOH A 63 1062 1062 HOH HOH . C 3 HOH A 64 1063 1063 HOH HOH . C 3 HOH A 65 1064 1064 HOH HOH . C 3 HOH A 66 1065 1065 HOH HOH . C 3 HOH A 67 1066 1066 HOH HOH . C 3 HOH A 68 1067 1067 HOH HOH . C 3 HOH A 69 1068 1068 HOH HOH . C 3 HOH A 70 1069 1069 HOH HOH . C 3 HOH A 71 1070 1070 HOH HOH . C 3 HOH A 72 1071 1071 HOH HOH . C 3 HOH A 73 1072 1072 HOH HOH . C 3 HOH A 74 1073 1073 HOH HOH . C 3 HOH A 75 1074 1074 HOH HOH . C 3 HOH A 76 1075 1075 HOH HOH . C 3 HOH A 77 1076 1076 HOH HOH . C 3 HOH A 78 1077 1077 HOH HOH . C 3 HOH A 79 1078 1078 HOH HOH . C 3 HOH A 80 1079 1079 HOH HOH . C 3 HOH A 81 1080 1080 HOH HOH . C 3 HOH A 82 1081 1081 HOH HOH . C 3 HOH A 83 1082 1082 HOH HOH . C 3 HOH A 84 1083 1083 HOH HOH . C 3 HOH A 85 1084 1084 HOH HOH . C 3 HOH A 86 1085 1085 HOH HOH . C 3 HOH A 87 1086 1086 HOH HOH . C 3 HOH A 88 1087 1087 HOH HOH . C 3 HOH A 89 1088 1088 HOH HOH . C 3 HOH A 90 1089 1089 HOH HOH . C 3 HOH A 91 1090 1090 HOH HOH . C 3 HOH A 92 1091 1091 HOH HOH . C 3 HOH A 93 1092 1092 HOH HOH . C 3 HOH A 94 1093 1093 HOH HOH . C 3 HOH A 95 1094 1094 HOH HOH . C 3 HOH A 96 1095 1095 HOH HOH . C 3 HOH A 97 1096 1096 HOH HOH . C 3 HOH A 98 1097 1097 HOH HOH . C 3 HOH A 99 1098 1098 HOH HOH . C 3 HOH A 100 1099 1099 HOH HOH . C 3 HOH A 101 1100 1100 HOH HOH . C 3 HOH A 102 1101 1101 HOH HOH . C 3 HOH A 103 1102 1102 HOH HOH . C 3 HOH A 104 1103 1103 HOH HOH . C 3 HOH A 105 1104 1104 HOH HOH . C 3 HOH A 106 1105 1105 HOH HOH . C 3 HOH A 107 1106 1106 HOH HOH . C 3 HOH A 108 1107 1107 HOH HOH . C 3 HOH A 109 1108 1108 HOH HOH . C 3 HOH A 110 1109 1109 HOH HOH . C 3 HOH A 111 1110 1110 HOH HOH . C 3 HOH A 112 1111 1111 HOH HOH . C 3 HOH A 113 1112 1112 HOH HOH . C 3 HOH A 114 1113 1113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 460 . . . B 2 10.435 64.424 4.982 1 11.22 ? C1 460 999 A 1 HETATM 2 C C2 460 . . . B 2 11.883 64.615 4.653 1 13.24 ? C2 460 999 A 1 HETATM 3 C C3 460 . . . B 2 12.463 63.931 3.564 1 13.9 ? C3 460 999 A 1 HETATM 4 C C4 460 . . . B 2 13.84 64.145 3.293 1 14.1 ? C4 460 999 A 1 HETATM 5 C C5 460 . . . B 2 14.602 65.026 4.107 1 14.28 ? C5 460 999 A 1 HETATM 6 C C6 460 . . . B 2 13.944 65.68 5.186 1 14.63 ? C6 460 999 A 1 HETATM 7 N N7 460 . . . B 2 12.602 65.475 5.45 1 13.74 ? N7 460 999 A 1 HETATM 8 C C8 460 . . . B 2 14.639 66.615 6.095 1 14.89 ? C8 460 999 A 1 HETATM 9 N N9 460 . . . B 2 14.419 66.546 7.436 1 15.2 ? N9 460 999 A 1 HETATM 10 N N10 460 . . . B 2 15.184 67.517 7.972 1 14.45 ? N10 460 999 A 1 HETATM 11 C C12 460 . . . B 2 15.896 68.218 7.037 1 16.16 ? C12 460 999 A 1 HETATM 12 C C13 460 . . . B 2 15.582 67.678 5.796 1 15.84 ? C13 460 999 A 1 HETATM 13 C C14 460 . . . B 2 16.165 68.185 4.54 1 16.42 ? C14 460 999 A 1 HETATM 14 C C15 460 . . . B 2 15.393 68.392 3.368 1 17.5 ? C15 460 999 A 1 HETATM 15 C C16 460 . . . B 2 16.042 68.887 2.208 1 16.99 ? C16 460 999 A 1 HETATM 16 C C17 460 . . . B 2 17.417 69.172 2.204 1 17.53 ? C17 460 999 A 1 HETATM 17 N N18 460 . . . B 2 18.032 69.655 1.071 1 18.63 ? N18 460 999 A 1 HETATM 18 C C19 460 . . . B 2 19.392 69.915 1.136 1 17.42 ? C19 460 999 A 1 HETATM 19 C C20 460 . . . B 2 20.162 69.71 2.295 1 18.7 ? C20 460 999 A 1 HETATM 20 C C21 460 . . . B 2 19.498 69.212 3.451 1 16.86 ? C21 460 999 A 1 HETATM 21 C C22 460 . . . B 2 18.118 68.931 3.444 1 17.2 ? C22 460 999 A 1 HETATM 22 N N23 460 . . . B 2 17.511 68.451 4.576 1 17.32 ? N23 460 999 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 7 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 395 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #