data_1VK2
#
_model_server_result.job_id            qsrwSoDTNXsKE0CrXUWfEg 
_model_server_result.datetime_utc      '2025-03-04 08:31:04' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vk2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":201}' 
#
_entry.id    1VK2 
#
_exptl.entry_id    1VK2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              351.64 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'IRON/SULFUR CLUSTER' 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            1VK2 
_cell.length_a            61.049 
_cell.length_b            61.049 
_cell.length_c            127.5 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VK2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        96 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 43 21 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      2 
_struct_asym.id                             B 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C MSE 13 A MSE 1 1_555 A N TYR 14 A TYR 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale2 A C LEU 19 A LEU 7 1_555 A N MSE 20 A MSE 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? 
covale ? covale3 A C MSE 20 A MSE 8 1_555 A N GLU 21 A GLU 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale4 A C GLY 76 A GLY 64 1_555 A N MSE 77 A MSE 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? 
covale ? covale5 A C MSE 77 A MSE 65 1_555 A N LEU 78 A LEU 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? 
metalc ? metalc1 A SG CYS 30 A CYS 18 1_555 B FE2 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.397 ? 
metalc ? metalc2 A SG CYS 33 A CYS 21 1_555 B FE4 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? 
metalc ? metalc3 A SG CYS 101 A CYS 89 1_555 B FE3 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.336 ? 
metalc ? metalc4 A SG CYS 117 A CYS 105 1_555 B FE1 SF4 . A SF4 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.229 ? 
#
_chem_comp.formula           'Fe4 S4' 
_chem_comp.formula_weight    351.64 
_chem_comp.id                SF4 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'IRON/SULFUR CLUSTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
FE1 S2 SF4 sing 309 n n 
FE1 S3 SF4 sing 310 n n 
FE1 S4 SF4 sing 311 n n 
FE2 S1 SF4 sing 312 n n 
FE2 S3 SF4 sing 313 n n 
FE2 S4 SF4 sing 314 n n 
FE3 S1 SF4 sing 315 n n 
FE3 S2 SF4 sing 316 n n 
FE3 S4 SF4 sing 317 n n 
FE4 S1 SF4 sing 318 n n 
FE4 S2 SF4 sing 319 n n 
FE4 S3 SF4 sing 320 n n 
#
_atom_sites.entry_id                     1VK2 
_atom_sites.fract_transf_matrix[1][1]    0.01638 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01638 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007843 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 SF4 A 1 201 201 SF4 FS4 . 
C 3 UNL A 1 301 301 UNL UNL . 
D 4 HOH A 1 302 1 HOH HOH . 
D 4 HOH A 2 303 2 HOH HOH . 
D 4 HOH A 3 304 3 HOH HOH . 
D 4 HOH A 4 305 4 HOH HOH . 
D 4 HOH A 5 306 5 HOH HOH . 
D 4 HOH A 6 307 6 HOH HOH . 
D 4 HOH A 7 308 7 HOH HOH . 
D 4 HOH A 8 309 8 HOH HOH . 
D 4 HOH A 9 310 9 HOH HOH . 
D 4 HOH A 10 311 10 HOH HOH . 
D 4 HOH A 11 312 11 HOH HOH . 
D 4 HOH A 12 313 12 HOH HOH . 
D 4 HOH A 13 314 13 HOH HOH . 
D 4 HOH A 14 315 14 HOH HOH . 
D 4 HOH A 15 316 15 HOH HOH . 
D 4 HOH A 16 317 16 HOH HOH . 
D 4 HOH A 17 318 17 HOH HOH . 
D 4 HOH A 18 319 18 HOH HOH . 
D 4 HOH A 19 320 19 HOH HOH . 
D 4 HOH A 20 321 20 HOH HOH . 
D 4 HOH A 21 322 21 HOH HOH . 
D 4 HOH A 22 323 22 HOH HOH . 
D 4 HOH A 23 324 23 HOH HOH . 
D 4 HOH A 24 325 24 HOH HOH . 
D 4 HOH A 25 326 25 HOH HOH . 
D 4 HOH A 26 327 26 HOH HOH . 
D 4 HOH A 27 328 27 HOH HOH . 
D 4 HOH A 28 329 28 HOH HOH . 
D 4 HOH A 29 330 29 HOH HOH . 
D 4 HOH A 30 331 30 HOH HOH . 
D 4 HOH A 31 332 31 HOH HOH . 
D 4 HOH A 32 333 32 HOH HOH . 
D 4 HOH A 33 334 33 HOH HOH . 
D 4 HOH A 34 335 34 HOH HOH . 
D 4 HOH A 35 336 35 HOH HOH . 
D 4 HOH A 36 337 36 HOH HOH . 
D 4 HOH A 37 338 37 HOH HOH . 
D 4 HOH A 38 339 38 HOH HOH . 
D 4 HOH A 39 340 39 HOH HOH . 
D 4 HOH A 40 341 40 HOH HOH . 
D 4 HOH A 41 342 41 HOH HOH . 
D 4 HOH A 42 343 42 HOH HOH . 
D 4 HOH A 43 344 43 HOH HOH . 
D 4 HOH A 44 345 44 HOH HOH . 
D 4 HOH A 45 346 45 HOH HOH . 
D 4 HOH A 46 347 46 HOH HOH . 
D 4 HOH A 47 348 47 HOH HOH . 
D 4 HOH A 48 349 48 HOH HOH . 
D 4 HOH A 49 350 49 HOH HOH . 
D 4 HOH A 50 351 50 HOH HOH . 
D 4 HOH A 51 352 51 HOH HOH . 
D 4 HOH A 52 353 52 HOH HOH . 
D 4 HOH A 53 354 53 HOH HOH . 
D 4 HOH A 54 355 54 HOH HOH . 
D 4 HOH A 55 356 55 HOH HOH . 
D 4 HOH A 56 357 56 HOH HOH . 
D 4 HOH A 57 358 57 HOH HOH . 
D 4 HOH A 58 359 58 HOH HOH . 
D 4 HOH A 59 360 59 HOH HOH . 
D 4 HOH A 60 361 60 HOH HOH . 
D 4 HOH A 61 362 61 HOH HOH . 
D 4 HOH A 62 363 62 HOH HOH . 
D 4 HOH A 63 364 63 HOH HOH . 
D 4 HOH A 64 365 64 HOH HOH . 
D 4 HOH A 65 366 65 HOH HOH . 
D 4 HOH A 66 367 66 HOH HOH . 
D 4 HOH A 67 368 67 HOH HOH . 
D 4 HOH A 68 369 68 HOH HOH . 
D 4 HOH A 69 370 69 HOH HOH . 
D 4 HOH A 70 371 70 HOH HOH . 
D 4 HOH A 71 372 71 HOH HOH . 
D 4 HOH A 72 373 72 HOH HOH . 
D 4 HOH A 73 374 73 HOH HOH . 
D 4 HOH A 74 375 74 HOH HOH . 
D 4 HOH A 75 376 75 HOH HOH . 
D 4 HOH A 76 377 76 HOH HOH . 
D 4 HOH A 77 378 77 HOH HOH . 
D 4 HOH A 78 379 78 HOH HOH . 
D 4 HOH A 79 380 79 HOH HOH . 
D 4 HOH A 80 381 80 HOH HOH . 
D 4 HOH A 81 382 81 HOH HOH . 
D 4 HOH A 82 383 82 HOH HOH . 
D 4 HOH A 83 384 83 HOH HOH . 
D 4 HOH A 84 385 84 HOH HOH . 
D 4 HOH A 85 386 85 HOH HOH . 
D 4 HOH A 86 387 86 HOH HOH . 
D 4 HOH A 87 388 87 HOH HOH . 
D 4 HOH A 88 389 88 HOH HOH . 
D 4 HOH A 89 390 89 HOH HOH . 
D 4 HOH A 90 391 90 HOH HOH . 
D 4 HOH A 91 392 91 HOH HOH . 
D 4 HOH A 92 393 92 HOH HOH . 
D 4 HOH A 93 394 93 HOH HOH . 
D 4 HOH A 94 395 94 HOH HOH . 
D 4 HOH A 95 396 95 HOH HOH . 
D 4 HOH A 96 397 96 HOH HOH . 
D 4 HOH A 97 398 97 HOH HOH . 
D 4 HOH A 98 399 98 HOH HOH . 
D 4 HOH A 99 400 99 HOH HOH . 
D 4 HOH A 100 401 100 HOH HOH . 
D 4 HOH A 101 402 101 HOH HOH . 
D 4 HOH A 102 403 102 HOH HOH . 
D 4 HOH A 103 404 103 HOH HOH . 
D 4 HOH A 104 405 104 HOH HOH . 
D 4 HOH A 105 406 105 HOH HOH . 
D 4 HOH A 106 407 106 HOH HOH . 
D 4 HOH A 107 408 107 HOH HOH . 
D 4 HOH A 108 409 108 HOH HOH . 
D 4 HOH A 109 410 109 HOH HOH . 
D 4 HOH A 110 411 110 HOH HOH . 
D 4 HOH A 111 412 111 HOH HOH . 
D 4 HOH A 112 413 112 HOH HOH . 
D 4 HOH A 113 414 113 HOH HOH . 
D 4 HOH A 114 415 114 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 FE FE1 SF4 . . . B 2 51.451 7.787 74.473 0.8 20.36 ? FE1 SF4 201 A 1 
HETATM 2 FE FE2 SF4 . . . B 2 51.67 5.282 75.354 0.8 20.54 ? FE2 SF4 201 A 1 
HETATM 3 FE FE3 SF4 . . . B 2 53.662 6.313 73.822 0.8 19.32 ? FE3 SF4 201 A 1 
HETATM 4 FE FE4 SF4 . . . B 2 51.207 5.712 72.755 0.8 20.01 ? FE4 SF4 201 A 1 
HETATM 5 S S1 SF4 . . . B 2 52.693 4.17 73.658 0.8 20.81 ? S1 SF4 201 A 1 
HETATM 6 S S2 SF4 . . . B 2 52.456 7.64 72.379 0.8 21.73 ? S2 SF4 201 A 1 
HETATM 7 S S3 SF4 . . . B 2 49.733 6.179 74.454 0.8 22.43 ? S3 SF4 201 A 1 
HETATM 8 S S4 SF4 . . . B 2 53.092 7.02 75.899 0.8 20.51 ? S4 SF4 201 A 1 
#
_model_server_stats.io_time_ms              7 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           8 
#