data_1VK9 # _model_server_result.job_id 11eNJesTobAWOXbtnHYlkw _model_server_result.datetime_utc '2025-03-04 08:43:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vk9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":141}' # _entry.id 1VK9 # _exptl.entry_id 1VK9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 65.409 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 1VK9 _cell.length_a 132.891 _cell.length_b 132.891 _cell.length_c 66.379 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VK9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 180 _symmetry.space_group_name_Hall . _symmetry.space_group_name_H-M 'P 62 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA,PQS tetrameric 4 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I 1 1 A,B,C,D,E,F,G,H,I 2 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 66.4455 115.086982 0 3 'crystal symmetry operation' 7_555 y,x,-z+2/3 -0.5 0.866025 0 0.866025 0.5 0 0 0 -1 0 0 44.252667 4 'crystal symmetry operation' 10_665 -y+1,-x+1,-z+2/3 0.5 -0.866025 0 -0.866025 -0.5 0 0 0 -1 66.4455 115.086982 44.252667 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 B N N ? 2 C N N ? 2 D N N ? 2 E N N ? 2 F N N ? 2 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LYS 69 A LYS 57 1_555 A N MSE 70 A MSE 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 A C MSE 70 A MSE 58 1_555 A N VAL 71 A VAL 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C LYS 81 A LYS 69 1_555 A N MSE 82 A MSE 70 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale4 A C MSE 82 A MSE 70 1_555 A N LYS 83 A LYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LEU 99 A LEU 87 1_555 A N MSE 100 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale6 A C MSE 100 A MSE 88 1_555 A N ASN 101 A ASN 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale7 A C SER 123 A SER 111 1_555 A N MSE 124 A MSE 112 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale8 A C MSE 124 A MSE 112 1_555 A N CYS 125 A CYS 113 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale9 A C GLU 133 A GLU 121 1_555 A N MSE 134 A MSE 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 A C MSE 134 A MSE 122 1_555 A N ASP 135 A ASP 123 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? metalc ? metalc1 A OD1 ASP 4 A ASP -8 1_555 C ZN ZN . A ZN 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.699 ? metalc ? metalc2 A OD2 ASP 4 A ASP -8 1_555 C ZN ZN . A ZN 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? metalc ? metalc3 A NZ LYS 5 A LYS -7 7_555 F ZN ZN . A ZN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc4 A ND1 HIS 7 A HIS -5 1_555 G ZN ZN . A ZN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.41 ? metalc ? metalc5 A ND1 HIS 7 A HIS -5 4_665 G ZN ZN . A ZN 145 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc6 A ND1 HIS 8 A HIS -4 1_555 D ZN ZN . A ZN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc7 A ND1 HIS 9 A HIS -3 4_665 C ZN ZN . A ZN 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.025 ? metalc ? metalc8 A NE2 HIS 10 A HIS -2 1_555 D ZN ZN . A ZN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? metalc ? metalc9 A NE2 HIS 11 A HIS -1 4_665 C ZN ZN . A ZN 141 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? metalc ? metalc10 A OD1 ASP 59 A ASP 47 4_665 D ZN ZN . A ZN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.507 ? metalc ? metalc11 A OD2 ASP 59 A ASP 47 4_665 D ZN ZN . A ZN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.111 ? metalc ? metalc12 A OE1 GLU 62 A GLU 50 1_555 D ZN ZN . A ZN 142 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.779 ? metalc ? metalc13 A NE2 HIS 88 A HIS 76 1_555 E ZN ZN . A ZN 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? metalc ? metalc14 A OE1 GLU 102 A GLU 90 1_555 B ZN ZN . A ZN 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.177 ? metalc ? metalc15 A OE2 GLU 102 A GLU 90 1_555 B ZN ZN . A ZN 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? metalc ? metalc16 A OE1 GLU 102 A GLU 90 10_665 B ZN ZN . A ZN 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? metalc ? metalc17 A OE2 GLU 102 A GLU 90 10_665 B ZN ZN . A ZN 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc18 A OD2 ASP 110 A ASP 98 1_555 E ZN ZN . A ZN 143 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.85 ? metalc ? metalc19 A OD1 ASP 136 A ASP 124 1_555 F ZN ZN . A ZN 144 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc20 C ZN ZN . A ZN 141 1_555 I O HOH . A HOH 204 4_665 ? ? ? ? ? ? ? ? ? ? ? ? 2.535 ? metalc ? metalc21 E ZN ZN . A ZN 143 1_555 I O HOH . A HOH 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.213 ? metalc ? metalc22 E ZN ZN . A ZN 143 1_555 I O HOH . A HOH 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.725 ? metalc ? metalc23 F ZN ZN . A ZN 144 1_555 I O HOH . A HOH 202 7_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? metalc ? metalc24 F ZN ZN . A ZN 144 1_555 I O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VK9 _atom_sites.fract_transf_matrix[1][1] 0.007525 _atom_sites.fract_transf_matrix[1][2] 0.004345 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015065 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 140 1 ZN ZN . C 2 ZN A 1 141 2 ZN ZN . D 2 ZN A 1 142 3 ZN ZN . E 2 ZN A 1 143 4 ZN ZN . F 2 ZN A 1 144 5 ZN ZN . G 2 ZN A 1 145 6 ZN ZN . H 3 UNL A 1 201 201 UNL UNL . I 4 HOH A 1 202 7 HOH HOH . I 4 HOH A 2 203 8 HOH HOH . I 4 HOH A 3 204 9 HOH HOH . I 4 HOH A 4 205 10 HOH HOH . I 4 HOH A 5 206 11 HOH HOH . I 4 HOH A 6 207 12 HOH HOH . I 4 HOH A 7 208 13 HOH HOH . I 4 HOH A 8 209 14 HOH HOH . I 4 HOH A 9 210 15 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id C _atom_site.label_entity_id 2 _atom_site.Cartn_x 39.119 _atom_site.Cartn_y 64.194 _atom_site.Cartn_z 25.834 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 56.58 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 141 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #