data_1VKB
#
_model_server_result.job_id            BC1MA3OLo1B6IcrqfVxHnA 
_model_server_result.datetime_utc      '2024-11-23 00:09:50' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          1vkb 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"B","auth_seq_id":150}' 
#
_entry.id    1VKB 
#
_exptl.entry_id    1VKB 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              46.025 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FORMIC ACID' 
_entity.pdbx_number_of_molecules    3 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            1VKB 
_cell.length_a            85.745 
_cell.length_b            85.745 
_cell.length_c            42.858 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 1VKB 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    . 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 B N N 
? 2 C N N 
? 2 D N N 
#
_struct_conn.conn_type_id                   disulf 
_struct_conn.details                        ? 
_struct_conn.id                             disulf1 
_struct_conn.ptnr1_label_asym_id            A 
_struct_conn.ptnr1_label_atom_id            SG 
_struct_conn.ptnr1_label_comp_id            CYS 
_struct_conn.ptnr1_label_seq_id             47 
_struct_conn.ptnr1_auth_asym_id             A 
_struct_conn.ptnr1_auth_comp_id             CYS 
_struct_conn.ptnr1_auth_seq_id              35 
_struct_conn.ptnr1_symmetry                 1_555 
_struct_conn.ptnr2_label_asym_id            A 
_struct_conn.ptnr2_label_atom_id            SG 
_struct_conn.ptnr2_label_comp_id            CYS 
_struct_conn.ptnr2_label_seq_id             74 
_struct_conn.ptnr2_auth_asym_id             A 
_struct_conn.ptnr2_auth_comp_id             CYS 
_struct_conn.ptnr2_auth_seq_id              62 
_struct_conn.ptnr2_symmetry                 1_555 
_struct_conn.pdbx_ptnr1_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr1_label_alt_id        A 
_struct_conn.pdbx_ptnr1_standard_comp_id    ? 
_struct_conn.pdbx_ptnr2_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr2_label_alt_id        A 
_struct_conn.pdbx_ptnr3_PDB_ins_code        ? 
_struct_conn.pdbx_ptnr3_label_alt_id        ? 
_struct_conn.pdbx_ptnr3_label_asym_id       ? 
_struct_conn.pdbx_ptnr3_label_atom_id       ? 
_struct_conn.pdbx_ptnr3_label_comp_id       ? 
_struct_conn.pdbx_ptnr3_label_seq_id        ? 
_struct_conn.pdbx_PDB_id                    ? 
_struct_conn.pdbx_dist_value                2.063 
_struct_conn.pdbx_value_order               ? 
#
_chem_comp.formula           'C H2 O2' 
_chem_comp.formula_weight    46.025 
_chem_comp.id                FMT 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FORMIC ACID' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C O1 FMT doub 83 n n 
C O2 FMT sing 84 n n 
C H FMT sing 85 n n 
O2 HO2 FMT sing 86 n n 
#
_atom_sites.entry_id                     1VKB 
_atom_sites.fract_transf_matrix[1][1]    0.011662 
_atom_sites.fract_transf_matrix[1][2]    0.006733 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.013467 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.023333 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FMT A 1 150 1 FMT FMT . 
C 2 FMT A 1 151 2 FMT FMT . 
D 2 FMT A 1 152 3 FMT FMT . 
E 3 HOH A 1 153 4 HOH HOH . 
E 3 HOH A 2 154 5 HOH HOH . 
E 3 HOH A 3 155 6 HOH HOH . 
E 3 HOH A 4 156 7 HOH HOH . 
E 3 HOH A 5 157 8 HOH HOH . 
E 3 HOH A 6 158 9 HOH HOH . 
E 3 HOH A 7 159 10 HOH HOH . 
E 3 HOH A 8 160 11 HOH HOH . 
E 3 HOH A 9 161 12 HOH HOH . 
E 3 HOH A 10 162 13 HOH HOH . 
E 3 HOH A 11 163 14 HOH HOH . 
E 3 HOH A 12 164 15 HOH HOH . 
E 3 HOH A 13 165 16 HOH HOH . 
E 3 HOH A 14 166 17 HOH HOH . 
E 3 HOH A 15 167 18 HOH HOH . 
E 3 HOH A 16 168 19 HOH HOH . 
E 3 HOH A 17 169 20 HOH HOH . 
E 3 HOH A 18 170 21 HOH HOH . 
E 3 HOH A 19 171 22 HOH HOH . 
E 3 HOH A 20 172 23 HOH HOH . 
E 3 HOH A 21 173 24 HOH HOH . 
E 3 HOH A 22 174 25 HOH HOH . 
E 3 HOH A 23 175 26 HOH HOH . 
E 3 HOH A 24 176 27 HOH HOH . 
E 3 HOH A 25 177 28 HOH HOH . 
E 3 HOH A 26 178 29 HOH HOH . 
E 3 HOH A 27 179 30 HOH HOH . 
E 3 HOH A 28 180 31 HOH HOH . 
E 3 HOH A 29 181 32 HOH HOH . 
E 3 HOH A 30 182 33 HOH HOH . 
E 3 HOH A 31 183 34 HOH HOH . 
E 3 HOH A 32 184 35 HOH HOH . 
E 3 HOH A 33 185 36 HOH HOH . 
E 3 HOH A 34 186 37 HOH HOH . 
E 3 HOH A 35 187 38 HOH HOH . 
E 3 HOH A 36 188 39 HOH HOH . 
E 3 HOH A 37 189 40 HOH HOH . 
E 3 HOH A 38 190 41 HOH HOH . 
E 3 HOH A 39 191 42 HOH HOH . 
E 3 HOH A 40 192 43 HOH HOH . 
E 3 HOH A 41 193 44 HOH HOH . 
E 3 HOH A 42 194 45 HOH HOH . 
E 3 HOH A 43 195 46 HOH HOH . 
E 3 HOH A 44 196 47 HOH HOH . 
E 3 HOH A 45 197 48 HOH HOH . 
E 3 HOH A 46 198 49 HOH HOH . 
E 3 HOH A 47 199 50 HOH HOH . 
E 3 HOH A 48 200 51 HOH HOH . 
E 3 HOH A 49 201 52 HOH HOH . 
E 3 HOH A 50 202 53 HOH HOH . 
E 3 HOH A 51 203 54 HOH HOH . 
E 3 HOH A 52 204 55 HOH HOH . 
E 3 HOH A 53 205 56 HOH HOH . 
E 3 HOH A 54 206 57 HOH HOH . 
E 3 HOH A 55 207 58 HOH HOH . 
E 3 HOH A 56 208 59 HOH HOH . 
E 3 HOH A 57 209 60 HOH HOH . 
E 3 HOH A 58 210 61 HOH HOH . 
E 3 HOH A 59 211 62 HOH HOH . 
E 3 HOH A 60 212 63 HOH HOH . 
E 3 HOH A 61 213 64 HOH HOH . 
E 3 HOH A 62 214 65 HOH HOH . 
E 3 HOH A 63 215 66 HOH HOH . 
E 3 HOH A 64 216 67 HOH HOH . 
E 3 HOH A 65 217 68 HOH HOH . 
E 3 HOH A 66 218 69 HOH HOH . 
E 3 HOH A 67 219 70 HOH HOH . 
E 3 HOH A 68 220 71 HOH HOH . 
E 3 HOH A 69 221 72 HOH HOH . 
E 3 HOH A 70 222 73 HOH HOH . 
E 3 HOH A 71 223 74 HOH HOH . 
E 3 HOH A 72 224 75 HOH HOH . 
E 3 HOH A 73 225 76 HOH HOH . 
E 3 HOH A 74 226 77 HOH HOH . 
E 3 HOH A 75 227 78 HOH HOH . 
E 3 HOH A 76 228 79 HOH HOH . 
E 3 HOH A 77 229 80 HOH HOH . 
E 3 HOH A 78 230 81 HOH HOH . 
E 3 HOH A 79 231 82 HOH HOH . 
E 3 HOH A 80 232 83 HOH HOH . 
E 3 HOH A 81 233 84 HOH HOH . 
E 3 HOH A 82 234 85 HOH HOH . 
E 3 HOH A 83 235 86 HOH HOH . 
E 3 HOH A 84 236 87 HOH HOH . 
E 3 HOH A 85 237 88 HOH HOH . 
E 3 HOH A 86 238 89 HOH HOH . 
E 3 HOH A 87 239 90 HOH HOH . 
E 3 HOH A 88 240 91 HOH HOH . 
E 3 HOH A 89 241 92 HOH HOH . 
E 3 HOH A 90 242 93 HOH HOH . 
E 3 HOH A 91 243 94 HOH HOH . 
E 3 HOH A 92 244 95 HOH HOH . 
E 3 HOH A 93 245 96 HOH HOH . 
E 3 HOH A 94 246 97 HOH HOH . 
E 3 HOH A 95 247 98 HOH HOH . 
E 3 HOH A 96 248 99 HOH HOH . 
E 3 HOH A 97 249 100 HOH HOH . 
E 3 HOH A 98 250 101 HOH HOH . 
E 3 HOH A 99 251 102 HOH HOH . 
E 3 HOH A 100 252 103 HOH HOH . 
E 3 HOH A 101 253 104 HOH HOH . 
E 3 HOH A 102 254 105 HOH HOH . 
E 3 HOH A 103 255 106 HOH HOH . 
E 3 HOH A 104 256 107 HOH HOH . 
E 3 HOH A 105 257 108 HOH HOH . 
E 3 HOH A 106 258 109 HOH HOH . 
E 3 HOH A 107 259 110 HOH HOH . 
E 3 HOH A 108 260 111 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C FMT . . . B 2 27.061 34.625 -4.378 1 33.44 ? C FMT 150 A 1 
HETATM 2 O O1 FMT . . . B 2 28.025 33.947 -3.964 1 33 ? O1 FMT 150 A 1 
HETATM 3 O O2 FMT . . . B 2 27.135 35.749 -4.941 1 31.79 ? O2 FMT 150 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           7 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           264 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           3 
#