data_1VKO # _model_server_result.job_id EE4RB-5UzOJvq_NtTcIqHg _model_server_result.datetime_utc '2024-10-18 23:33:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 1vko # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":530}' # _entry.id 1VKO # _exptl.entry_id 1VKO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 126.904 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'IODIDE ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 1VKO _cell.length_a 76.98 _cell.length_b 129.98 _cell.length_c 131.32 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1VKO _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_565 -x,-y+1,z -1 0 0 0 -1 0 0 0 1 0 129.98 0 3 'crystal symmetry operation' 3_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 0 0 131.32 4 'crystal symmetry operation' 4_566 x,-y+1,-z+1 1 0 0 0 -1 0 0 0 -1 0 129.98 131.32 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 88 A ASN 76 1_555 B K K . A K 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.94 ? metalc ? metalc2 A ND2 ASN 358 A ASN 346 1_555 B K K . A K 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.582 ? metalc ? metalc3 A OD1 ASP 412 A ASP 400 1_555 B K K . A K 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.56 ? metalc ? metalc4 A N SER 441 A SER 429 1_555 B K K . A K 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.635 ? metalc ? metalc5 A OG SER 441 A SER 429 1_555 B K K . A K 526 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.192 ? metalc ? metalc6 B K K . A K 526 1_555 G O7N NAD . A NAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.67 ? metalc ? metalc7 B K K . A K 526 1_555 G O2N NAD . A NAD 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.574 ? metalc ? metalc8 B K K . A K 526 1_555 I O HOH . A HOH 684 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.698 ? # _chem_comp.formula 'I -1' _chem_comp.formula_weight 126.904 _chem_comp.id IOD _chem_comp.mon_nstd_flag . _chem_comp.name 'IODIDE ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 1VKO _atom_sites.fract_transf_matrix[1][1] 0.01299 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007693 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007615 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K A 1 526 1 K K . C 3 CL A 1 527 2 CL CL . D 3 CL A 1 528 3 CL CL . E 4 IOD A 1 529 4 IOD IOD . F 4 IOD A 1 530 5 IOD IOD . G 5 NAD A 1 601 601 NAD NAD . H 6 POP A 1 602 602 POP POP . I 7 HOH A 1 603 6 HOH HOH . I 7 HOH A 2 604 7 HOH HOH . I 7 HOH A 3 605 8 HOH HOH . I 7 HOH A 4 606 9 HOH HOH . I 7 HOH A 5 607 10 HOH HOH . I 7 HOH A 6 608 11 HOH HOH . I 7 HOH A 7 609 12 HOH HOH . I 7 HOH A 8 610 13 HOH HOH . I 7 HOH A 9 611 14 HOH HOH . I 7 HOH A 10 612 15 HOH HOH . I 7 HOH A 11 613 16 HOH HOH . I 7 HOH A 12 614 17 HOH HOH . I 7 HOH A 13 615 18 HOH HOH . I 7 HOH A 14 616 19 HOH HOH . I 7 HOH A 15 617 20 HOH HOH . I 7 HOH A 16 618 21 HOH HOH . I 7 HOH A 17 619 22 HOH HOH . I 7 HOH A 18 620 23 HOH HOH . I 7 HOH A 19 621 24 HOH HOH . I 7 HOH A 20 622 25 HOH HOH . I 7 HOH A 21 623 26 HOH HOH . I 7 HOH A 22 624 27 HOH HOH . I 7 HOH A 23 625 28 HOH HOH . I 7 HOH A 24 626 29 HOH HOH . I 7 HOH A 25 627 30 HOH HOH . I 7 HOH A 26 628 31 HOH HOH . I 7 HOH A 27 629 32 HOH HOH . I 7 HOH A 28 630 33 HOH HOH . I 7 HOH A 29 631 34 HOH HOH . I 7 HOH A 30 632 35 HOH HOH . I 7 HOH A 31 633 36 HOH HOH . I 7 HOH A 32 634 37 HOH HOH . I 7 HOH A 33 635 38 HOH HOH . I 7 HOH A 34 636 39 HOH HOH . I 7 HOH A 35 637 40 HOH HOH . I 7 HOH A 36 638 41 HOH HOH . I 7 HOH A 37 639 42 HOH HOH . I 7 HOH A 38 640 43 HOH HOH . I 7 HOH A 39 641 44 HOH HOH . I 7 HOH A 40 642 45 HOH HOH . I 7 HOH A 41 643 46 HOH HOH . I 7 HOH A 42 644 47 HOH HOH . I 7 HOH A 43 645 48 HOH HOH . I 7 HOH A 44 646 49 HOH HOH . I 7 HOH A 45 647 50 HOH HOH . I 7 HOH A 46 648 51 HOH HOH . I 7 HOH A 47 649 52 HOH HOH . I 7 HOH A 48 650 53 HOH HOH . I 7 HOH A 49 651 54 HOH HOH . I 7 HOH A 50 652 55 HOH HOH . I 7 HOH A 51 653 56 HOH HOH . I 7 HOH A 52 654 57 HOH HOH . I 7 HOH A 53 655 58 HOH HOH . I 7 HOH A 54 656 59 HOH HOH . I 7 HOH A 55 657 60 HOH HOH . I 7 HOH A 56 658 61 HOH HOH . I 7 HOH A 57 659 62 HOH HOH . I 7 HOH A 58 660 63 HOH HOH . I 7 HOH A 59 661 64 HOH HOH . I 7 HOH A 60 662 65 HOH HOH . I 7 HOH A 61 663 66 HOH HOH . I 7 HOH A 62 664 67 HOH HOH . I 7 HOH A 63 665 68 HOH HOH . I 7 HOH A 64 666 69 HOH HOH . I 7 HOH A 65 667 70 HOH HOH . I 7 HOH A 66 668 71 HOH HOH . I 7 HOH A 67 669 72 HOH HOH . I 7 HOH A 68 670 73 HOH HOH . I 7 HOH A 69 671 74 HOH HOH . I 7 HOH A 70 672 75 HOH HOH . I 7 HOH A 71 673 76 HOH HOH . I 7 HOH A 72 674 77 HOH HOH . I 7 HOH A 73 675 78 HOH HOH . I 7 HOH A 74 676 79 HOH HOH . I 7 HOH A 75 677 80 HOH HOH . I 7 HOH A 76 678 81 HOH HOH . I 7 HOH A 77 679 82 HOH HOH . I 7 HOH A 78 680 83 HOH HOH . I 7 HOH A 79 681 84 HOH HOH . I 7 HOH A 80 682 85 HOH HOH . I 7 HOH A 81 683 86 HOH HOH . I 7 HOH A 82 684 87 HOH HOH . I 7 HOH A 83 685 88 HOH HOH . I 7 HOH A 84 686 89 HOH HOH . I 7 HOH A 85 687 90 HOH HOH . I 7 HOH A 86 688 91 HOH HOH . I 7 HOH A 87 689 92 HOH HOH . I 7 HOH A 88 690 93 HOH HOH . I 7 HOH A 89 691 94 HOH HOH . I 7 HOH A 90 692 95 HOH HOH . I 7 HOH A 91 693 96 HOH HOH . I 7 HOH A 92 694 97 HOH HOH . I 7 HOH A 93 695 98 HOH HOH . I 7 HOH A 94 696 99 HOH HOH . I 7 HOH A 95 697 100 HOH HOH . I 7 HOH A 96 698 101 HOH HOH . I 7 HOH A 97 699 102 HOH HOH . I 7 HOH A 98 700 103 HOH HOH . I 7 HOH A 99 701 104 HOH HOH . I 7 HOH A 100 702 105 HOH HOH . I 7 HOH A 101 703 106 HOH HOH . I 7 HOH A 102 704 107 HOH HOH . I 7 HOH A 103 705 108 HOH HOH . I 7 HOH A 104 706 109 HOH HOH . I 7 HOH A 105 707 110 HOH HOH . I 7 HOH A 106 708 111 HOH HOH . I 7 HOH A 107 709 112 HOH HOH . I 7 HOH A 108 710 113 HOH HOH . I 7 HOH A 109 711 114 HOH HOH . I 7 HOH A 110 712 115 HOH HOH . I 7 HOH A 111 713 116 HOH HOH . I 7 HOH A 112 714 117 HOH HOH . I 7 HOH A 113 715 118 HOH HOH . I 7 HOH A 114 716 119 HOH HOH . I 7 HOH A 115 717 120 HOH HOH . I 7 HOH A 116 718 121 HOH HOH . I 7 HOH A 117 719 122 HOH HOH . I 7 HOH A 118 720 123 HOH HOH . I 7 HOH A 119 721 124 HOH HOH . I 7 HOH A 120 722 125 HOH HOH . I 7 HOH A 121 723 126 HOH HOH . I 7 HOH A 122 724 127 HOH HOH . I 7 HOH A 123 725 128 HOH HOH . I 7 HOH A 124 726 129 HOH HOH . I 7 HOH A 125 727 130 HOH HOH . I 7 HOH A 126 728 131 HOH HOH . I 7 HOH A 127 729 132 HOH HOH . I 7 HOH A 128 730 133 HOH HOH . I 7 HOH A 129 731 134 HOH HOH . I 7 HOH A 130 732 135 HOH HOH . I 7 HOH A 131 733 136 HOH HOH . I 7 HOH A 132 734 137 HOH HOH . I 7 HOH A 133 735 138 HOH HOH . I 7 HOH A 134 736 139 HOH HOH . I 7 HOH A 135 737 140 HOH HOH . I 7 HOH A 136 738 141 HOH HOH . I 7 HOH A 137 739 142 HOH HOH . I 7 HOH A 138 740 143 HOH HOH . I 7 HOH A 139 741 144 HOH HOH . I 7 HOH A 140 742 145 HOH HOH . I 7 HOH A 141 743 146 HOH HOH . I 7 HOH A 142 744 147 HOH HOH . I 7 HOH A 143 745 148 HOH HOH . I 7 HOH A 144 746 149 HOH HOH . I 7 HOH A 145 747 150 HOH HOH . I 7 HOH A 146 748 151 HOH HOH . I 7 HOH A 147 749 152 HOH HOH . I 7 HOH A 148 750 153 HOH HOH . I 7 HOH A 149 751 154 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol I _atom_site.label_atom_id I _atom_site.label_comp_id IOD _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id F _atom_site.label_entity_id 4 _atom_site.Cartn_x -18.449 _atom_site.Cartn_y 47.125 _atom_site.Cartn_z 52.479 _atom_site.occupancy 0.5 _atom_site.B_iso_or_equiv 39.82 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id I _atom_site.auth_comp_id IOD _atom_site.auth_seq_id 530 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 380 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 1 #